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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 281 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 534 |
| AatII | GACGTC | 1 cut(s) | 84 |
| AccB1I | GGYRCC | 2 cut(s) | 370, 458 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 328 |
| AccI | GTMKAC | 1 cut(s) | 345 |
| AccII | CGCG | 1 cut(s) | 112 |
| AciI | CCGC | 5 cut(s) | 12, 44, 110, 311, 501 |
| AclWI | GGATC | 2 cut(s) | 355, 633 |
| AcoI | YGGCCR | 1 cut(s) | 498 |
| AcsI | RAATTY | 1 cut(s) | 275 |
| AcyI | GRCGYC | 1 cut(s) | 81 |
| AfaI | GTAC | 1 cut(s) | 159 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 328 |
| AgeI | ACCGGT | 1 cut(s) | 664 |
| AgsI | TTSAA | 3 cut(s) | 164, 275, 565 |
| AjnI | CCWGG | 5 cut(s) | 120, 321, 411, 472, 620 |
| AluBI | AGCT | 3 cut(s) | 39, 188, 340 |
| AluI | AGCT | 3 cut(s) | 39, 188, 340 |
| Alw26I | GTCTC | 2 cut(s) | 88, 234 |
| AlwI | GGATC | 2 cut(s) | 355, 633 |
| AoxI | GGCC | 2 cut(s) | 196, 498 |
| ApeKI | GCWGC | 4 cut(s) | 101, 104, 490, 493 |
| ApoI | RAATTY | 1 cut(s) | 275 |
| AsiGI | ACCGGT | 1 cut(s) | 664 |
| AspLEI | GCGC | 1 cut(s) | 660 |
| AsuII | TTCGAA | 1 cut(s) | 544 |
| BaeGI | GKGCMC | 1 cut(s) | 173 |
| BanI | GGYRCC | 2 cut(s) | 370, 458 |
| BbvI | GCAGC | 4 cut(s) | 88, 116, 502, 505 |
| BccI | CCATC | 4 cut(s) | 188, 296, 449, 563 |
| BceAI | ACGGC | 1 cut(s) | 48 |
| BciT130I | CCWGG | 5 cut(s) | 122, 323, 413, 474, 622 |
| BclI | TGATCA | 1 cut(s) | 178 |
| BcoDI | GTCTC | 2 cut(s) | 88, 234 |
| BfaI | CTAG | 2 cut(s) | 174, 200 |
| BfmI | CTRYAG | 1 cut(s) | 102 |
| BglII | AGATCT | 1 cut(s) | 390 |
| BisI | GCNGC | 6 cut(s) | 45, 102, 105, 491, 494, 501 |
| BlsI | GCNGC | 6 cut(s) | 46, 103, 106, 492, 495, 502 |
| Bme1390I | CCNGG | 5 cut(s) | 122, 323, 413, 474, 622 |
| BmiI | GGNNCC | 2 cut(s) | 372, 460 |
| BmrFI | CCNGG | 5 cut(s) | 122, 323, 413, 474, 622 |
| BmsI | GCATC | 2 cut(s) | 56, 459 |
| BpmI | CTGGAG | 1 cut(s) | 84 |
| Bpu14I | TTCGAA | 1 cut(s) | 544 |
| BsaHI | GRCGYC | 1 cut(s) | 81 |
| BsaJI | CCNNGG | 3 cut(s) | 120, 121, 621 |
| BsaWI | WCCGGW | 1 cut(s) | 664 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 57, 87 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 328 |
| Bse118I | RCCGGY | 2 cut(s) | 496, 664 |
| Bse1I | ACTGG | 1 cut(s) | 358 |
| BseBI | CCWGG | 5 cut(s) | 122, 323, 413, 474, 622 |
| BseDI | CCNNGG | 3 cut(s) | 120, 121, 621 |
| BseGI | GGATG | 1 cut(s) | 460 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 328 |
| BseMII | CTCAG | 1 cut(s) | 688 |
| BseNI | ACTGG | 1 cut(s) | 358 |
| BseSI | GKGCMC | 1 cut(s) | 173 |
| BseX3I | CGGCCG | 1 cut(s) | 498 |
| BseXI | GCAGC | 4 cut(s) | 88, 116, 502, 505 |
| BsgI | GTGCAG | 2 cut(s) | 252, 614 |
| Bsh1236I | CGCG | 1 cut(s) | 112 |
| Bsh1285I | CGRYCG | 1 cut(s) | 501 |
| BshFI | GGCC | 2 cut(s) | 198, 500 |
| BshNI | GGYRCC | 2 cut(s) | 370, 458 |
| BshTI | ACCGGT | 1 cut(s) | 664 |
| BsiEI | CGRYCG | 1 cut(s) | 501 |
| BsiSI | CCGG | 3 cut(s) | 364, 497, 665 |
| BslFI | GGGAC | 1 cut(s) | 163 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 328 |
| BsmAI | GTCTC | 2 cut(s) | 88, 234 |
| BsmBI | CGTCTC | 1 cut(s) | 88 |
| BsmFI | GGGAC | 1 cut(s) | 163 |
| BsmI | GAATGC | 1 cut(s) | 685 |
| BsnI | GGCC | 2 cut(s) | 198, 500 |
| Bsp119I | TTCGAA | 1 cut(s) | 544 |
| Bsp1286I | GDGCHC | 1 cut(s) | 173 |
| Bsp143I | GATC | 5 cut(s) | 178, 360, 390, 441, 625 |
| BspACI | CCGC | 5 cut(s) | 12, 44, 110, 311, 501 |
| BspANI | GGCC | 2 cut(s) | 198, 500 |
| BspCNI | CTCAG | 1 cut(s) | 687 |
| BspFNI | CGCG | 1 cut(s) | 112 |
| BspLI | GGNNCC | 2 cut(s) | 372, 460 |
| BspMAI | CTGCAG | 1 cut(s) | 106 |
| BspPI | GGATC | 2 cut(s) | 355, 633 |
| BspT104I | TTCGAA | 1 cut(s) | 544 |
| BspT107I | GGYRCC | 2 cut(s) | 370, 458 |
| BsrFI | RCCGGY | 2 cut(s) | 496, 664 |
| BsrI | ACTGG | 1 cut(s) | 358 |
| BssAI | RCCGGY | 2 cut(s) | 496, 664 |
| BssECI | CCNNGG | 3 cut(s) | 120, 121, 621 |
| BssMI | GATC | 5 cut(s) | 178, 360, 390, 441, 625 |
| BssNI | GRCGYC | 1 cut(s) | 81 |
| Bst2UI | CCWGG | 5 cut(s) | 122, 323, 413, 474, 622 |
| Bst4CI | ACNGT | 3 cut(s) | 154, 217, 687 |
| Bst6I | CTCTTC | 1 cut(s) | 381 |
| BstACI | GRCGYC | 1 cut(s) | 81 |
| BstBI | TTCGAA | 1 cut(s) | 544 |
| BstC8I | GCNNGC | 5 cut(s) | 16, 37, 313, 369, 498 |
| BstDEI | CTNAG | 1 cut(s) | 674 |
| BstF5I | GGATG | 1 cut(s) | 460 |
| BstFNI | CGCG | 1 cut(s) | 112 |
| BstHHI | GCGC | 1 cut(s) | 660 |
| BstKTI | GATC | 5 cut(s) | 181, 363, 393, 444, 628 |
| BstMAI | GTCTC | 2 cut(s) | 88, 234 |
| BstMBI | GATC | 5 cut(s) | 178, 360, 390, 441, 625 |
| BstMCI | CGRYCG | 1 cut(s) | 501 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 41, 53, 308, 490, 579 |
| BstNI | CCWGG | 5 cut(s) | 122, 323, 413, 474, 622 |
| BstSCI | CCNGG | 5 cut(s) | 120, 321, 411, 472, 620 |
| BstSFI | CTRYAG | 1 cut(s) | 102 |
| BstSLI | GKGCMC | 1 cut(s) | 173 |
| BstUI | CGCG | 1 cut(s) | 112 |
| BstV1I | GCAGC | 4 cut(s) | 88, 116, 502, 505 |
| BstX2I | RGATCY | 3 cut(s) | 360, 390, 625 |
| BstYI | RGATCY | 3 cut(s) | 360, 390, 625 |
| BstZI | CGGCCG | 1 cut(s) | 498 |
| BsuRI | GGCC | 2 cut(s) | 198, 500 |
| BtgZI | GCGATG | 1 cut(s) | 84 |
| BtsCI | GGATG | 1 cut(s) | 460 |
| Cac8I | GCNNGC | 5 cut(s) | 16, 37, 313, 369, 498 |
| CfoI | GCGC | 1 cut(s) | 660 |
| Cfr10I | RCCGGY | 2 cut(s) | 496, 664 |
| CsiI | ACCWGGT | 1 cut(s) | 411 |
| Csp6I | GTAC | 1 cut(s) | 158 |
| CspAI | ACCGGT | 1 cut(s) | 664 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 363, 398 |
| CviAII | CATG | 3 cut(s) | 223, 328, 449 |
| CviQI | GTAC | 1 cut(s) | 158 |
| DdeI | CTNAG | 1 cut(s) | 674 |
| DpnI | GATC | 5 cut(s) | 180, 362, 392, 443, 627 |
| DpnII | GATC | 5 cut(s) | 178, 360, 390, 441, 625 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 534 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 534 |
| EaeI | YGGCCR | 1 cut(s) | 498 |
| EagI | CGGCCG | 1 cut(s) | 498 |
| Eam1104I | CTCTTC | 1 cut(s) | 381 |
| EarI | CTCTTC | 1 cut(s) | 381 |
| EclXI | CGGCCG | 1 cut(s) | 498 |
| Eco52I | CGGCCG | 1 cut(s) | 498 |
| EcoRII | CCWGG | 5 cut(s) | 120, 321, 411, 472, 620 |
| Esp3I | CGTCTC | 1 cut(s) | 88 |
| FaeI | CATG | 3 cut(s) | 226, 331, 452 |
| FaqI | GGGAC | 1 cut(s) | 163 |
| FatI | CATG | 3 cut(s) | 222, 327, 448 |
| FauI | CCCGC | 1 cut(s) | 304 |
| FbaI | TGATCA | 1 cut(s) | 178 |
| FblI | GTMKAC | 1 cut(s) | 345 |
| Fnu4HI | GCNGC | 6 cut(s) | 45, 102, 105, 491, 494, 501 |
| FokI | GGATG | 1 cut(s) | 467 |
| Fsp4HI | GCNGC | 6 cut(s) | 45, 102, 105, 491, 494, 501 |
| FspBI | CTAG | 2 cut(s) | 174, 200 |
| GlaI | GCGC | 1 cut(s) | 659 |
| GluI | GCNGC | 6 cut(s) | 45, 102, 105, 491, 494, 501 |
| GsuI | CTGGAG | 1 cut(s) | 84 |
| HaeIII | GGCC | 2 cut(s) | 198, 500 |
| HapII | CCGG | 3 cut(s) | 364, 497, 665 |
| HhaI | GCGC | 1 cut(s) | 660 |
| Hin1I | GRCGYC | 1 cut(s) | 81 |
| Hin1II | CATG | 3 cut(s) | 226, 331, 452 |
| Hin6I | GCGC | 1 cut(s) | 658 |
| HinP1I | GCGC | 1 cut(s) | 658 |
| HincII | GTYRAC | 1 cut(s) | 346 |
| HindII | GTYRAC | 1 cut(s) | 346 |
| HindIII | AAGCTT | 2 cut(s) | 186, 338 |
| HinfI | GANTC | 2 cut(s) | 227, 652 |
| HpaII | CCGG | 3 cut(s) | 364, 497, 665 |
| Hpy166II | GTNNAC | 3 cut(s) | 220, 346, 518 |
| Hpy188III | TCNNGA | 3 cut(s) | 247, 649, 676 |
| Hpy8I | GTNNAC | 3 cut(s) | 220, 346, 518 |
| HpyCH4III | ACNGT | 3 cut(s) | 154, 217, 687 |
| HpyCH4IV | ACGT | 2 cut(s) | 81, 297 |
| HpyCH4V | TGCA | 7 cut(s) | 104, 130, 269, 532, 554, 595, 683 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 41, 53, 308, 490, 579 |
| HpyF3I | CTNAG | 1 cut(s) | 674 |
| HpySE526I | ACGT | 2 cut(s) | 81, 297 |
| Hsp92I | GRCGYC | 1 cut(s) | 81 |
| Hsp92II | CATG | 3 cut(s) | 226, 331, 452 |
| HspAI | GCGC | 1 cut(s) | 658 |
| KroI | GCCGGC | 1 cut(s) | 496 |
| KroNI | GCCGGC | 1 cut(s) | 498 |
| Ksp22I | TGATCA | 1 cut(s) | 178 |
| Kzo9I | GATC | 5 cut(s) | 178, 360, 390, 441, 625 |
| Lsp1109I | GCAGC | 4 cut(s) | 88, 116, 502, 505 |
| LweI | GCATC | 2 cut(s) | 56, 459 |
| MabI | ACCWGGT | 1 cut(s) | 411 |
| MaeI | CTAG | 2 cut(s) | 174, 200 |
| MaeII | ACGT | 2 cut(s) | 81, 297 |
| MaeIII | GTNAC | 2 cut(s) | 28, 434 |
| MalI | GATC | 5 cut(s) | 180, 362, 392, 443, 627 |
| MboI | GATC | 5 cut(s) | 178, 360, 390, 441, 625 |
| MboII | GAAGA | 2 cut(s) | 398, 662 |
| MflI | RGATCY | 3 cut(s) | 360, 390, 625 |
| MhlI | GDGCHC | 1 cut(s) | 173 |
| MluCI | AATT | 2 cut(s) | 275, 522 |
| MlyI | GAGTC | 1 cut(s) | 236 |
| MnlI | CCTC | 6 cut(s) | 19, 59, 273, 313, 506, 656 |
| MroNI | GCCGGC | 1 cut(s) | 496 |
| MseI | TTAA | 1 cut(s) | 585 |
| MslI | CAYNNNNRTG | 1 cut(s) | 453 |
| MspA1I | CMGCKG | 2 cut(s) | 14, 503 |
| MspI | CCGG | 3 cut(s) | 364, 497, 665 |
| MspR9I | CCNGG | 5 cut(s) | 122, 323, 413, 474, 622 |
| Mva1269I | GAATGC | 1 cut(s) | 685 |
| MvaI | CCWGG | 5 cut(s) | 122, 323, 413, 474, 622 |
| MvnI | CGCG | 1 cut(s) | 112 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 41, 53, 308, 490, 579 |
| NaeI | GCCGGC | 1 cut(s) | 498 |
| NdeII | GATC | 5 cut(s) | 178, 360, 390, 441, 625 |
| NgoMIV | GCCGGC | 1 cut(s) | 496 |
| NlaIII | CATG | 3 cut(s) | 226, 331, 452 |
| NlaIV | GGNNCC | 2 cut(s) | 372, 460 |
| NmuCI | GTSAC | 2 cut(s) | 28, 434 |
| NspV | TTCGAA | 1 cut(s) | 544 |
| PasI | CCCWGGG | 1 cut(s) | 121 |
| PctI | GAATGC | 1 cut(s) | 685 |
| PdiI | GCCGGC | 1 cut(s) | 498 |
| PfeI | GAWTC | 1 cut(s) | 652 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 328 |
| PfoI | TCCNGGA | 1 cut(s) | 321 |
| PinAI | ACCGGT | 1 cut(s) | 664 |
| PkrI | GCNGC | 6 cut(s) | 46, 103, 106, 492, 495, 502 |
| PleI | GAGTC | 1 cut(s) | 235 |
| PpsI | GAGTC | 1 cut(s) | 235 |
| PsiI | TTATAA | 1 cut(s) | 281 |
| Psp6I | CCWGG | 5 cut(s) | 120, 321, 411, 472, 620 |
| PspGI | CCWGG | 5 cut(s) | 120, 321, 411, 472, 620 |
| PspN4I | GGNNCC | 2 cut(s) | 372, 460 |
| PstI | CTGCAG | 1 cut(s) | 106 |
| PsuI | RGATCY | 3 cut(s) | 360, 390, 625 |
| RsaI | GTAC | 1 cut(s) | 159 |
| RsaNI | GTAC | 1 cut(s) | 158 |
| RseI | CAYNNNNRTG | 1 cut(s) | 453 |
| SalI | GTCGAC | 1 cut(s) | 344 |
| SaqAI | TTAA | 1 cut(s) | 585 |
| SatI | GCNGC | 6 cut(s) | 45, 102, 105, 491, 494, 501 |
| Sau3AI | GATC | 5 cut(s) | 178, 360, 390, 441, 625 |
| SchI | GAGTC | 1 cut(s) | 236 |
| ScrFI | CCNGG | 5 cut(s) | 122, 323, 413, 474, 622 |
| SduI | GDGCHC | 1 cut(s) | 173 |
| SexAI | ACCWGGT | 1 cut(s) | 411 |
| SfaNI | GCATC | 2 cut(s) | 56, 459 |
| SfcI | CTRYAG | 1 cut(s) | 102 |
| SfuI | TTCGAA | 1 cut(s) | 544 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 453 |
| Sse9I | AATT | 2 cut(s) | 275, 522 |
| SsiI | CCGC | 5 cut(s) | 12, 44, 110, 311, 501 |
| SspI | AATATT | 1 cut(s) | 259 |
| SspMI | CTAG | 2 cut(s) | 174, 200 |
| StyD4I | CCNGG | 5 cut(s) | 120, 321, 411, 472, 620 |
| TaaI | ACNGT | 3 cut(s) | 154, 217, 687 |
| TaiI | ACGT | 2 cut(s) | 84, 300 |
| TaqI | TCGA | 2 cut(s) | 345, 544 |
| TasI | AATT | 2 cut(s) | 275, 522 |
| TauI | GCSGC | 2 cut(s) | 47, 503 |
| TfiI | GAWTC | 1 cut(s) | 652 |
| Tru1I | TTAA | 1 cut(s) | 585 |
| Tru9I | TTAA | 1 cut(s) | 585 |
| TseFI | GTSAC | 2 cut(s) | 28, 434 |
| TseI | GCWGC | 4 cut(s) | 101, 104, 490, 493 |
| Tsp45I | GTSAC | 2 cut(s) | 28, 434 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 328 |
| XapI | RAATTY | 1 cut(s) | 275 |
| XmiI | GTMKAC | 1 cut(s) | 345 |
| XspI | CTAG | 2 cut(s) | 174, 200 |
| ZraI | GACGTC | 1 cut(s) | 82 |