Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4283 | PF14111 | 82 - 157 | 1.8e-10 | Domain of unknown function (DUF4283) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 201 |
| Acc36I | ACCTGC | 1 cut(s) | 370 |
| AccBSI | CCGCTC | 1 cut(s) | 227 |
| AciI | CCGC | 3 cut(s) | 39, 227, 238 |
| AcsI | RAATTY | 2 cut(s) | 139, 341 |
| AcyI | GRCGYC | 1 cut(s) | 198 |
| AfaI | GTAC | 1 cut(s) | 434 |
| AgsI | TTSAA | 4 cut(s) | 78, 316, 346, 389 |
| Alw21I | GWGCWC | 1 cut(s) | 13 |
| AoxI | GGCC | 1 cut(s) | 354 |
| ApeKI | GCWGC | 2 cut(s) | 20, 41 |
| ApoI | RAATTY | 2 cut(s) | 139, 341 |
| AspLEI | GCGC | 1 cut(s) | 38 |
| AspS9I | GGNCC | 1 cut(s) | 425 |
| AsuHPI | GGTGA | 1 cut(s) | 121 |
| AsuII | TTCGAA | 1 cut(s) | 278 |
| AvaII | GGWCC | 1 cut(s) | 425 |
| Bbv12I | GWGCWC | 1 cut(s) | 13 |
| BbvI | GCAGC | 2 cut(s) | 7, 28 |
| BccI | CCATC | 3 cut(s) | 106, 464, 472 |
| BceAI | ACGGC | 1 cut(s) | 174 |
| BfaI | CTAG | 3 cut(s) | 293, 410, 517 |
| BfoI | RGCGCY | 1 cut(s) | 39 |
| BfuAI | ACCTGC | 1 cut(s) | 370 |
| BglII | AGATCT | 1 cut(s) | 298 |
| BisI | GCNGC | 5 cut(s) | 21, 39, 42, 228, 238 |
| BlsI | GCNGC | 5 cut(s) | 22, 40, 43, 229, 239 |
| Bme18I | GGWCC | 1 cut(s) | 425 |
| BmgT120I | GGNCC | 1 cut(s) | 425 |
| BmiI | GGNNCC | 1 cut(s) | 407 |
| BpmI | CTGGAG | 1 cut(s) | 243 |
| Bpu14I | TTCGAA | 1 cut(s) | 278 |
| BpuEI | CTTGAG | 1 cut(s) | 377 |
| Bsa29I | ATCGAT | 2 cut(s) | 60, 217 |
| BsaBI | GATNNNNATC | 1 cut(s) | 501 |
| BsaHI | GRCGYC | 1 cut(s) | 198 |
| BsaJI | CCNNGG | 1 cut(s) | 428 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 70, 100 |
| Bse8I | GATNNNNATC | 1 cut(s) | 501 |
| BseCI | ATCGAT | 2 cut(s) | 60, 217 |
| BseDI | CCNNGG | 1 cut(s) | 428 |
| BseGI | GGATG | 2 cut(s) | 93, 98 |
| BseJI | GATNNNNATC | 1 cut(s) | 501 |
| BseMII | CTCAG | 1 cut(s) | 95 |
| BseXI | GCAGC | 2 cut(s) | 7, 28 |
| BsgI | GTGCAG | 1 cut(s) | 6 |
| Bsh1285I | CGRYCG | 1 cut(s) | 60 |
| BshFI | GGCC | 1 cut(s) | 356 |
| BshVI | ATCGAT | 2 cut(s) | 60, 217 |
| BsiEI | CGRYCG | 1 cut(s) | 60 |
| BsiHKAI | GWGCWC | 1 cut(s) | 13 |
| BsnI | GGCC | 1 cut(s) | 356 |
| Bsp119I | TTCGAA | 1 cut(s) | 278 |
| Bsp1286I | GDGCHC | 1 cut(s) | 13 |
| Bsp143I | GATC | 4 cut(s) | 57, 218, 289, 298 |
| Bsp19I | CCATGG | 1 cut(s) | 428 |
| BspACI | CCGC | 3 cut(s) | 39, 227, 238 |
| BspANI | GGCC | 1 cut(s) | 356 |
| BspCNI | CTCAG | 1 cut(s) | 96 |
| BspDI | ATCGAT | 2 cut(s) | 60, 217 |
| BspLI | GGNNCC | 1 cut(s) | 407 |
| BspMI | ACCTGC | 1 cut(s) | 370 |
| BspQI | GCTCTTC | 1 cut(s) | 51 |
| BspT104I | TTCGAA | 1 cut(s) | 278 |
| BsrBI | CCGCTC | 1 cut(s) | 227 |
| BssECI | CCNNGG | 1 cut(s) | 428 |
| BssMI | GATC | 4 cut(s) | 57, 218, 289, 298 |
| BssNI | GRCGYC | 1 cut(s) | 198 |
| BssT1I | CCWWGG | 1 cut(s) | 428 |
| Bst6I | CTCTTC | 1 cut(s) | 51 |
| BstACI | GRCGYC | 1 cut(s) | 198 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 17 |
| BstBI | TTCGAA | 1 cut(s) | 278 |
| BstC8I | GCNNGC | 3 cut(s) | 180, 190, 261 |
| BstDEI | CTNAG | 1 cut(s) | 104 |
| BstDSI | CCRYGG | 1 cut(s) | 428 |
| BstF5I | GGATG | 2 cut(s) | 93, 98 |
| BstH2I | RGCGCY | 1 cut(s) | 39 |
| BstHHI | GCGC | 1 cut(s) | 38 |
| BstKTI | GATC | 4 cut(s) | 60, 221, 292, 301 |
| BstMBI | GATC | 4 cut(s) | 57, 218, 289, 298 |
| BstMCI | CGRYCG | 1 cut(s) | 60 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 17, 167, 265, 362 |
| BstV1I | GCAGC | 2 cut(s) | 7, 28 |
| BstX2I | RGATCY | 1 cut(s) | 298 |
| BstYI | RGATCY | 1 cut(s) | 298 |
| Bsu15I | ATCGAT | 2 cut(s) | 60, 217 |
| BsuRI | GGCC | 1 cut(s) | 356 |
| BsuTUI | ATCGAT | 2 cut(s) | 60, 217 |
| BtgI | CCRYGG | 1 cut(s) | 428 |
| BtgZI | GCGATG | 1 cut(s) | 159 |
| BtsCI | GGATG | 2 cut(s) | 93, 98 |
| BveI | ACCTGC | 1 cut(s) | 370 |
| Cac8I | GCNNGC | 3 cut(s) | 180, 190, 261 |
| CfoI | GCGC | 1 cut(s) | 38 |
| Cfr13I | GGNCC | 1 cut(s) | 425 |
| ClaI | ATCGAT | 2 cut(s) | 60, 217 |
| Csp6I | GTAC | 1 cut(s) | 433 |
| CviAII | CATG | 2 cut(s) | 133, 429 |
| CviJI | RGCY | 2 cut(s) | 268, 356 |
| CviKI_1 | RGCY | 2 cut(s) | 268, 356 |
| CviQI | GTAC | 1 cut(s) | 433 |
| DdeI | CTNAG | 1 cut(s) | 104 |
| DpnI | GATC | 4 cut(s) | 59, 220, 291, 300 |
| DpnII | GATC | 4 cut(s) | 57, 218, 289, 298 |
| Eam1104I | CTCTTC | 1 cut(s) | 51 |
| EarI | CTCTTC | 1 cut(s) | 51 |
| Eco130I | CCWWGG | 1 cut(s) | 428 |
| Eco47I | GGWCC | 1 cut(s) | 425 |
| EcoT14I | CCWWGG | 1 cut(s) | 428 |
| ErhI | CCWWGG | 1 cut(s) | 428 |
| FaeI | CATG | 2 cut(s) | 136, 432 |
| FaiI | YATR | 6 cut(s) | 134, 418, 430, 446, 452, 500 |
| FatI | CATG | 2 cut(s) | 132, 428 |
| Fnu4HI | GCNGC | 5 cut(s) | 21, 39, 42, 228, 238 |
| FokI | GGATG | 2 cut(s) | 80, 85 |
| Fsp4HI | GCNGC | 5 cut(s) | 21, 39, 42, 228, 238 |
| FspBI | CTAG | 3 cut(s) | 293, 410, 517 |
| GlaI | GCGC | 1 cut(s) | 37 |
| GluI | GCNGC | 5 cut(s) | 21, 39, 42, 228, 238 |
| GsuI | CTGGAG | 1 cut(s) | 243 |
| HaeII | RGCGCY | 1 cut(s) | 39 |
| HaeIII | GGCC | 1 cut(s) | 356 |
| HhaI | GCGC | 1 cut(s) | 38 |
| Hin1I | GRCGYC | 1 cut(s) | 198 |
| Hin1II | CATG | 2 cut(s) | 136, 432 |
| Hin6I | GCGC | 1 cut(s) | 36 |
| HinP1I | GCGC | 1 cut(s) | 36 |
| HinfI | GANTC | 2 cut(s) | 106, 502 |
| HphI | GGTGA | 1 cut(s) | 121 |
| Hpy188I | TCNGA | 3 cut(s) | 72, 273, 463 |
| Hpy188III | TCNNGA | 2 cut(s) | 55, 222 |
| HpyAV | CCTTC | 1 cut(s) | 120 |
| HpyCH4IV | ACGT | 2 cut(s) | 198, 207 |
| HpyCH4V | TGCA | 1 cut(s) | 23 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 17, 167, 265, 362 |
| HpyF3I | CTNAG | 1 cut(s) | 104 |
| HpySE526I | ACGT | 2 cut(s) | 198, 207 |
| Hsp92I | GRCGYC | 1 cut(s) | 198 |
| Hsp92II | CATG | 2 cut(s) | 136, 432 |
| HspAI | GCGC | 1 cut(s) | 36 |
| Kzo9I | GATC | 4 cut(s) | 57, 218, 289, 298 |
| LguI | GCTCTTC | 1 cut(s) | 51 |
| LmnI | GCTCC | 2 cut(s) | 8, 224 |
| LpnPI | CCDG | 6 cut(s) | 116, 174, 207, 338, 370, 375 |
| Lsp1109I | GCAGC | 2 cut(s) | 7, 28 |
| MaeI | CTAG | 3 cut(s) | 293, 410, 517 |
| MaeII | ACGT | 2 cut(s) | 198, 207 |
| MaeIII | GTNAC | 1 cut(s) | 154 |
| MalI | GATC | 4 cut(s) | 59, 220, 291, 300 |
| MbiI | CCGCTC | 1 cut(s) | 227 |
| MboI | GATC | 4 cut(s) | 57, 218, 289, 298 |
| MboII | GAAGA | 4 cut(s) | 38, 367, 370, 431 |
| MflI | RGATCY | 1 cut(s) | 298 |
| MhlI | GDGCHC | 1 cut(s) | 13 |
| MluCI | AATT | 3 cut(s) | 139, 341, 492 |
| MlyI | GAGTC | 1 cut(s) | 115 |
| MmeI | TCCRAC | 1 cut(s) | 328 |
| MnlI | CCTC | 3 cut(s) | 127, 279, 416 |
| MspA1I | CMGCKG | 1 cut(s) | 41 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 17, 167, 265, 362 |
| NcoI | CCATGG | 1 cut(s) | 428 |
| NdeII | GATC | 4 cut(s) | 57, 218, 289, 298 |
| NlaIII | CATG | 2 cut(s) | 136, 432 |
| NlaIV | GGNNCC | 1 cut(s) | 407 |
| NmuCI | GTSAC | 1 cut(s) | 154 |
| NspV | TTCGAA | 1 cut(s) | 278 |
| PciSI | GCTCTTC | 1 cut(s) | 51 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 204 |
| PfeI | GAWTC | 1 cut(s) | 502 |
| PflFI | GACNNNGTC | 1 cut(s) | 152 |
| PkrI | GCNGC | 5 cut(s) | 22, 40, 43, 229, 239 |
| Ple19I | CGATCG | 1 cut(s) | 60 |
| PleI | GAGTC | 1 cut(s) | 114 |
| PpsI | GAGTC | 1 cut(s) | 114 |
| PspN4I | GGNNCC | 1 cut(s) | 407 |
| PspPI | GGNCC | 1 cut(s) | 425 |
| PsuI | RGATCY | 1 cut(s) | 298 |
| PsyI | GACNNNGTC | 1 cut(s) | 152 |
| PvuI | CGATCG | 1 cut(s) | 60 |
| RsaI | GTAC | 1 cut(s) | 434 |
| RsaNI | GTAC | 1 cut(s) | 433 |
| SapI | GCTCTTC | 1 cut(s) | 51 |
| SatI | GCNGC | 5 cut(s) | 21, 39, 42, 228, 238 |
| Sau3AI | GATC | 4 cut(s) | 57, 218, 289, 298 |
| Sau96I | GGNCC | 1 cut(s) | 425 |
| SchI | GAGTC | 1 cut(s) | 115 |
| SduI | GDGCHC | 1 cut(s) | 13 |
| SetI | ASST | 5 cut(s) | 201, 210, 351, 364, 411 |
| SfuI | TTCGAA | 1 cut(s) | 278 |
| SinI | GGWCC | 1 cut(s) | 425 |
| SmlI | CTYRAG | 1 cut(s) | 392 |
| SmoI | CTYRAG | 1 cut(s) | 392 |
| Sse9I | AATT | 3 cut(s) | 139, 341, 492 |
| SsiI | CCGC | 3 cut(s) | 39, 227, 238 |
| SspMI | CTAG | 3 cut(s) | 293, 410, 517 |
| StyI | CCWWGG | 1 cut(s) | 428 |
| TaiI | ACGT | 2 cut(s) | 201, 210 |
| TaqI | TCGA | 6 cut(s) | 60, 119, 217, 278, 486, 505 |
| TasI | AATT | 3 cut(s) | 139, 341, 492 |
| TauI | GCSGC | 3 cut(s) | 41, 230, 240 |
| TfiI | GAWTC | 1 cut(s) | 502 |
| TseFI | GTSAC | 1 cut(s) | 154 |
| TseI | GCWGC | 2 cut(s) | 20, 41 |
| Tsp45I | GTSAC | 1 cut(s) | 154 |
| TspDTI | ATGAA | 3 cut(s) | 82, 504, 515 |
| Tth111I | GACNNNGTC | 1 cut(s) | 152 |
| VpaK11BI | GGWCC | 1 cut(s) | 425 |
| XapI | RAATTY | 2 cut(s) | 139, 341 |
| XspI | CTAG | 3 cut(s) | 293, 410, 517 |
| ZraI | GACGTC | 1 cut(s) | 199 |