Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 185 |
| AccB1I | GGYRCC | 1 cut(s) | 106 |
| AciI | CCGC | 3 cut(s) | 84, 354, 583 |
| AclWI | GGATC | 2 cut(s) | 36, 607 |
| AcyI | GRCGYC | 1 cut(s) | 107 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 367, 368, 514, 550, 551 |
| AgsI | TTSAA | 1 cut(s) | 449 |
| AjnI | CCWGG | 1 cut(s) | 474 |
| AluBI | AGCT | 5 cut(s) | 23, 154, 331, 406, 452 |
| AluI | AGCT | 5 cut(s) | 23, 154, 331, 406, 452 |
| AlwI | GGATC | 2 cut(s) | 36, 607 |
| AoxI | GGCC | 1 cut(s) | 590 |
| ApeKI | GCWGC | 1 cut(s) | 318 |
| AspA2I | CCTAGG | 1 cut(s) | 595 |
| AspLEI | GCGC | 2 cut(s) | 109, 186 |
| AspS9I | GGNCC | 2 cut(s) | 86, 591 |
| AsuHPI | GGTGA | 2 cut(s) | 387, 535 |
| AsuNHI | GCTAGC | 1 cut(s) | 331 |
| AvaII | GGWCC | 1 cut(s) | 86 |
| AvrII | CCTAGG | 1 cut(s) | 595 |
| BanI | GGYRCC | 1 cut(s) | 106 |
| BbsI | GAAGAC | 1 cut(s) | 213 |
| BbvCI | CCTCAGC | 1 cut(s) | 24 |
| BbvI | GCAGC | 1 cut(s) | 330 |
| BccI | CCATC | 1 cut(s) | 125 |
| BciT130I | CCWGG | 1 cut(s) | 476 |
| BciVI | GTATCC | 1 cut(s) | 425 |
| BfaI | CTAG | 3 cut(s) | 332, 498, 596 |
| BfmI | CTRYAG | 1 cut(s) | 119 |
| BfoI | RGCGCY | 1 cut(s) | 110 |
| BfuI | GTATCC | 1 cut(s) | 425 |
| BglII | AGATCT | 1 cut(s) | 123 |
| BisI | GCNGC | 1 cut(s) | 319 |
| BlnI | CCTAGG | 1 cut(s) | 595 |
| BlsI | GCNGC | 1 cut(s) | 320 |
| Bme1390I | CCNGG | 1 cut(s) | 476 |
| Bme18I | GGWCC | 1 cut(s) | 86 |
| BmgT120I | GGNCC | 2 cut(s) | 86, 591 |
| BmiI | GGNNCC | 2 cut(s) | 108, 593 |
| BmrFI | CCNGG | 1 cut(s) | 476 |
| BmsI | GCATC | 1 cut(s) | 195 |
| BmtI | GCTAGC | 1 cut(s) | 335 |
| BoxI | GACNNNNGTC | 1 cut(s) | 213 |
| BpiI | GAAGAC | 1 cut(s) | 213 |
| BpmI | CTGGAG | 1 cut(s) | 497 |
| Bpu10I | CCTNAGC | 1 cut(s) | 24 |
| BsaHI | GRCGYC | 1 cut(s) | 107 |
| BsaJI | CCNNGG | 4 cut(s) | 89, 300, 513, 595 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 417, 447 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 367, 368, 514, 550, 551 |
| Bse118I | RCCGGY | 1 cut(s) | 109 |
| BseBI | CCWGG | 1 cut(s) | 476 |
| BseDI | CCNNGG | 4 cut(s) | 89, 300, 513, 595 |
| BseGI | GGATG | 1 cut(s) | 485 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 367, 368, 514, 550, 551 |
| BseMII | CTCAG | 2 cut(s) | 15, 68 |
| BseXI | GCAGC | 1 cut(s) | 330 |
| BshFI | GGCC | 1 cut(s) | 592 |
| BshNI | GGYRCC | 1 cut(s) | 106 |
| BsiSI | CCGG | 1 cut(s) | 110 |
| BslFI | GGGAC | 2 cut(s) | 326, 344 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 367, 368, 514, 550, 551 |
| BsmFI | GGGAC | 2 cut(s) | 326, 344 |
| BsmI | GAATGC | 2 cut(s) | 241, 320 |
| BsnI | GGCC | 1 cut(s) | 592 |
| Bsp143I | GATC | 4 cut(s) | 28, 49, 123, 599 |
| Bsp19I | CCATGG | 1 cut(s) | 89 |
| BspACI | CCGC | 3 cut(s) | 84, 354, 583 |
| BspANI | GGCC | 1 cut(s) | 592 |
| BspCNI | CTCAG | 2 cut(s) | 16, 69 |
| BspLI | GGNNCC | 2 cut(s) | 108, 593 |
| BspMAI | CTGCAG | 1 cut(s) | 123 |
| BspOI | GCTAGC | 1 cut(s) | 335 |
| BspPI | GGATC | 2 cut(s) | 36, 607 |
| BspT107I | GGYRCC | 1 cut(s) | 106 |
| BsrFI | RCCGGY | 1 cut(s) | 109 |
| BssAI | RCCGGY | 1 cut(s) | 109 |
| BssECI | CCNNGG | 4 cut(s) | 89, 300, 513, 595 |
| BssMI | GATC | 4 cut(s) | 28, 49, 123, 599 |
| BssNI | GRCGYC | 1 cut(s) | 107 |
| BssT1I | CCWWGG | 4 cut(s) | 89, 300, 513, 595 |
| Bst2UI | CCWGG | 1 cut(s) | 476 |
| Bst6I | CTCTTC | 2 cut(s) | 176, 397 |
| BstACI | GRCGYC | 1 cut(s) | 107 |
| BstC8I | GCNNGC | 2 cut(s) | 333, 442 |
| BstDEI | CTNAG | 3 cut(s) | 24, 77, 242 |
| BstDSI | CCRYGG | 1 cut(s) | 89 |
| BstF5I | GGATG | 1 cut(s) | 485 |
| BstH2I | RGCGCY | 1 cut(s) | 110 |
| BstHHI | GCGC | 2 cut(s) | 109, 186 |
| BstKTI | GATC | 4 cut(s) | 31, 52, 126, 602 |
| BstMBI | GATC | 4 cut(s) | 28, 49, 123, 599 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 437, 589 |
| BstNI | CCWGG | 1 cut(s) | 476 |
| BstNSI | RCATGY | 2 cut(s) | 290, 444 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 213 |
| BstSCI | CCNGG | 1 cut(s) | 474 |
| BstSFI | CTRYAG | 1 cut(s) | 119 |
| BstV1I | GCAGC | 1 cut(s) | 330 |
| BstV2I | GAAGAC | 1 cut(s) | 213 |
| BstX2I | RGATCY | 1 cut(s) | 123 |
| BstYI | RGATCY | 1 cut(s) | 123 |
| BsuI | GTATCC | 1 cut(s) | 425 |
| BsuRI | GGCC | 1 cut(s) | 592 |
| BtgI | CCRYGG | 1 cut(s) | 89 |
| BtsCI | GGATG | 1 cut(s) | 485 |
| BtsIMutI | CAGTG | 1 cut(s) | 140 |
| Cac8I | GCNNGC | 2 cut(s) | 333, 442 |
| CfoI | GCGC | 2 cut(s) | 109, 186 |
| Cfr10I | RCCGGY | 1 cut(s) | 109 |
| Cfr13I | GGNCC | 2 cut(s) | 86, 591 |
| CviAII | CATG | 4 cut(s) | 90, 160, 287, 441 |
| CviJI | RGCY | 8 cut(s) | 23, 154, 331, 335, 406, 452, 531, 592 |
| CviKI_1 | RGCY | 8 cut(s) | 23, 154, 331, 335, 406, 452, 531, 592 |
| DdeI | CTNAG | 3 cut(s) | 24, 77, 242 |
| DinI | GGCGCC | 1 cut(s) | 108 |
| DpnI | GATC | 4 cut(s) | 30, 51, 125, 601 |
| DpnII | GATC | 4 cut(s) | 28, 49, 123, 599 |
| Eam1104I | CTCTTC | 2 cut(s) | 176, 397 |
| EarI | CTCTTC | 2 cut(s) | 176, 397 |
| Eco130I | CCWWGG | 4 cut(s) | 89, 300, 513, 595 |
| Eco47I | GGWCC | 1 cut(s) | 86 |
| EcoO109I | RGGNCCY | 1 cut(s) | 591 |
| EcoRII | CCWGG | 1 cut(s) | 474 |
| EcoT14I | CCWWGG | 4 cut(s) | 89, 300, 513, 595 |
| EgeI | GGCGCC | 1 cut(s) | 108 |
| EheI | GGCGCC | 1 cut(s) | 108 |
| ErhI | CCWWGG | 4 cut(s) | 89, 300, 513, 595 |
| FaeI | CATG | 4 cut(s) | 93, 163, 290, 444 |
| FaiI | YATR | 4 cut(s) | 91, 161, 288, 442 |
| FaqI | GGGAC | 2 cut(s) | 326, 344 |
| FatI | CATG | 4 cut(s) | 89, 159, 286, 440 |
| FauI | CCCGC | 1 cut(s) | 576 |
| Fnu4HI | GCNGC | 1 cut(s) | 319 |
| FokI | GGATG | 1 cut(s) | 472 |
| Fsp4HI | GCNGC | 1 cut(s) | 319 |
| FspAI | RTGCGCAY | 1 cut(s) | 185 |
| FspBI | CTAG | 3 cut(s) | 332, 498, 596 |
| FspI | TGCGCA | 1 cut(s) | 185 |
| GlaI | GCGC | 2 cut(s) | 108, 185 |
| GluI | GCNGC | 1 cut(s) | 319 |
| GsuI | CTGGAG | 1 cut(s) | 497 |
| HaeII | RGCGCY | 1 cut(s) | 110 |
| HaeIII | GGCC | 1 cut(s) | 592 |
| HapII | CCGG | 1 cut(s) | 110 |
| HhaI | GCGC | 2 cut(s) | 109, 186 |
| Hin1I | GRCGYC | 1 cut(s) | 107 |
| Hin1II | CATG | 4 cut(s) | 93, 163, 290, 444 |
| Hin6I | GCGC | 2 cut(s) | 107, 184 |
| HinP1I | GCGC | 2 cut(s) | 107, 184 |
| HindIII | AAGCTT | 1 cut(s) | 404 |
| HinfI | GANTC | 1 cut(s) | 9 |
| HpaII | CCGG | 1 cut(s) | 110 |
| HphI | GGTGA | 2 cut(s) | 387, 535 |
| Hpy166II | GTNNAC | 3 cut(s) | 483, 495, 536 |
| Hpy188I | TCNGA | 2 cut(s) | 56, 249 |
| Hpy188III | TCNNGA | 1 cut(s) | 281 |
| Hpy8I | GTNNAC | 3 cut(s) | 483, 495, 536 |
| HpyAV | CCTTC | 3 cut(s) | 192, 244, 582 |
| HpyCH4V | TGCA | 3 cut(s) | 121, 318, 440 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 437, 589 |
| HpyF3I | CTNAG | 3 cut(s) | 24, 77, 242 |
| Hsp92I | GRCGYC | 1 cut(s) | 107 |
| Hsp92II | CATG | 4 cut(s) | 93, 163, 290, 444 |
| HspAI | GCGC | 2 cut(s) | 107, 184 |
| KasI | GGCGCC | 1 cut(s) | 106 |
| Kzo9I | GATC | 4 cut(s) | 28, 49, 123, 599 |
| LmnI | GCTCC | 3 cut(s) | 302, 328, 457 |
| Lsp1109I | GCAGC | 1 cut(s) | 330 |
| LweI | GCATC | 1 cut(s) | 195 |
| MaeI | CTAG | 3 cut(s) | 332, 498, 596 |
| MaeIII | GTNAC | 2 cut(s) | 138, 523 |
| MalI | GATC | 4 cut(s) | 30, 51, 125, 601 |
| MboI | GATC | 4 cut(s) | 28, 49, 123, 599 |
| MboII | GAAGA | 6 cut(s) | 163, 166, 218, 384, 586, 589 |
| MflI | RGATCY | 1 cut(s) | 123 |
| Mly113I | GGCGCC | 1 cut(s) | 107 |
| MmeI | TCCRAC | 3 cut(s) | 37, 79, 401 |
| MnlI | CCTC | 8 cut(s) | 19, 74, 179, 228, 232, 443, 514, 544 |
| MseI | TTAA | 2 cut(s) | 408, 468 |
| MspA1I | CMGCKG | 1 cut(s) | 356 |
| MspI | CCGG | 1 cut(s) | 110 |
| MspR9I | CCNGG | 1 cut(s) | 476 |
| Mva1269I | GAATGC | 2 cut(s) | 241, 320 |
| MvaI | CCWGG | 1 cut(s) | 476 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 437, 589 |
| NarI | GGCGCC | 1 cut(s) | 107 |
| NcoI | CCATGG | 1 cut(s) | 89 |
| NdeII | GATC | 4 cut(s) | 28, 49, 123, 599 |
| NheI | GCTAGC | 1 cut(s) | 331 |
| NlaIII | CATG | 4 cut(s) | 93, 163, 290, 444 |
| NlaIV | GGNNCC | 2 cut(s) | 108, 593 |
| NmuCI | GTSAC | 2 cut(s) | 138, 523 |
| NsbI | TGCGCA | 1 cut(s) | 185 |
| NspI | RCATGY | 2 cut(s) | 290, 444 |
| PaeI | GCATGC | 1 cut(s) | 444 |
| PctI | GAATGC | 2 cut(s) | 241, 320 |
| PfeI | GAWTC | 1 cut(s) | 9 |
| PkrI | GCNGC | 1 cut(s) | 320 |
| PluTI | GGCGCC | 1 cut(s) | 110 |
| PshAI | GACNNNNGTC | 1 cut(s) | 213 |
| Psp6I | CCWGG | 1 cut(s) | 474 |
| PspGI | CCWGG | 1 cut(s) | 474 |
| PspN4I | GGNNCC | 2 cut(s) | 108, 593 |
| PspPI | GGNCC | 2 cut(s) | 86, 591 |
| PstI | CTGCAG | 1 cut(s) | 123 |
| PsuI | RGATCY | 1 cut(s) | 123 |
| SaqAI | TTAA | 2 cut(s) | 408, 468 |
| SatI | GCNGC | 1 cut(s) | 319 |
| Sau3AI | GATC | 4 cut(s) | 28, 49, 123, 599 |
| Sau96I | GGNCC | 2 cut(s) | 86, 591 |
| ScrFI | CCNGG | 1 cut(s) | 476 |
| SfaNI | GCATC | 1 cut(s) | 195 |
| SfcI | CTRYAG | 1 cut(s) | 119 |
| SfoI | GGCGCC | 1 cut(s) | 108 |
| SinI | GGWCC | 1 cut(s) | 86 |
| SphI | GCATGC | 1 cut(s) | 444 |
| SsiI | CCGC | 3 cut(s) | 84, 354, 583 |
| SspDI | GGCGCC | 1 cut(s) | 106 |
| SspMI | CTAG | 3 cut(s) | 332, 498, 596 |
| StyD4I | CCNGG | 1 cut(s) | 474 |
| StyI | CCWWGG | 4 cut(s) | 89, 300, 513, 595 |
| TaqI | TCGA | 3 cut(s) | 189, 233, 280 |
| TfiI | GAWTC | 1 cut(s) | 9 |
| Tru1I | TTAA | 2 cut(s) | 408, 468 |
| Tru9I | TTAA | 2 cut(s) | 408, 468 |
| TscAI | CASTG | 1 cut(s) | 147 |
| TseFI | GTSAC | 2 cut(s) | 138, 523 |
| TseI | GCWGC | 1 cut(s) | 318 |
| Tsp45I | GTSAC | 2 cut(s) | 138, 523 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspGWI | ACGGA | 1 cut(s) | 341 |
| TspRI | CASTG | 1 cut(s) | 147 |
| VpaK11BI | GGWCC | 1 cut(s) | 86 |
| XceI | RCATGY | 2 cut(s) | 290, 444 |
| XmaJI | CCTAGG | 1 cut(s) | 595 |
| XspI | CTAG | 3 cut(s) | 332, 498, 596 |