Protein of unknown function (DUF688)
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 813 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 1370, 1826 |
| Acc36I | ACCTGC | 2 cut(s) | 504, 1658 |
| AccB1I | GGYRCC | 2 cut(s) | 229, 248 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 554 |
| AccBSI | CCGCTC | 1 cut(s) | 113 |
| AccI | GTMKAC | 1 cut(s) | 59 |
| AciI | CCGC | 5 cut(s) | 108, 111, 600, 1166, 1420 |
| AclWI | GGATC | 3 cut(s) | 1357, 1559, 1625 |
| AcoI | YGGCCR | 1 cut(s) | 878 |
| AcsI | RAATTY | 2 cut(s) | 1787, 1852 |
| AcuI | CTGAAG | 2 cut(s) | 778, 813 |
| AcyI | GRCGYC | 3 cut(s) | 56, 62, 249 |
| AfaI | GTAC | 5 cut(s) | 155, 178, 749, 759, 1210 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 554, 1183, 1426 |
| AflIII | ACRYGT | 1 cut(s) | 894 |
| AgsI | TTSAA | 6 cut(s) | 391, 764, 1339, 1570, 1793, 1894 |
| AhlI | ACTAGT | 1 cut(s) | 1646 |
| AjnI | CCWGG | 3 cut(s) | 51, 730, 1500 |
| Alw21I | GWGCWC | 2 cut(s) | 1273, 1419 |
| Alw26I | GTCTC | 5 cut(s) | 511, 1011, 1192, 1834, 1932 |
| AlwI | GGATC | 3 cut(s) | 1357, 1559, 1625 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 941, 990, 1048 |
| AoxI | GGCC | 4 cut(s) | 6, 168, 439, 878 |
| ApeKI | GCWGC | 8 cut(s) | 93, 349, 694, 935, 1154, 1226, 1441, 1906 |
| ApoI | RAATTY | 2 cut(s) | 1787, 1852 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 567, 1061, 1080 |
| AspLEI | GCGC | 4 cut(s) | 245, 251, 406, 476 |
| AspS9I | GGNCC | 1 cut(s) | 1363 |
| AsuHPI | GGTGA | 6 cut(s) | 9, 272, 537, 563, 779, 782 |
| AsuNHI | GCTAGC | 1 cut(s) | 1723 |
| AvaII | GGWCC | 1 cut(s) | 1363 |
| AxyI | CCTNAGG | 1 cut(s) | 584 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 286, 319 |
| BalI | TGGCCA | 1 cut(s) | 880 |
| BanI | GGYRCC | 2 cut(s) | 229, 248 |
| BanII | GRGCYC | 1 cut(s) | 1273 |
| BbsI | GAAGAC | 1 cut(s) | 819 |
| Bbv12I | GWGCWC | 2 cut(s) | 1273, 1419 |
| BbvI | GCAGC | 8 cut(s) | 105, 336, 681, 947, 1141, 1213, 1428, 1918 |
| BccI | CCATC | 4 cut(s) | 328, 588, 1247, 1923 |
| BcgI | CGANNNNNNTGC | 8 cut(s) | 49, 83, 520, 554, 1730, 1764, 1836, 1870 |
| BciT130I | CCWGG | 3 cut(s) | 53, 732, 1502 |
| BciVI | GTATCC | 1 cut(s) | 631 |
| BclI | TGATCA | 4 cut(s) | 186, 432, 945, 1000 |
| BcoDI | GTCTC | 5 cut(s) | 511, 1011, 1192, 1834, 1932 |
| BcuI | ACTAGT | 1 cut(s) | 1646 |
| BfaI | CTAG | 4 cut(s) | 821, 1188, 1647, 1724 |
| BfmI | CTRYAG | 3 cut(s) | 172, 447, 1713 |
| BfoI | RGCGCY | 3 cut(s) | 246, 252, 407 |
| BfuAI | ACCTGC | 2 cut(s) | 504, 1658 |
| BfuI | GTATCC | 1 cut(s) | 631 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1163 |
| BglII | AGATCT | 1 cut(s) | 1535 |
| BlpI | GCTNAGC | 1 cut(s) | 71 |
| BmcAI | AGTACT | 2 cut(s) | 749, 759 |
| Bme1390I | CCNGG | 3 cut(s) | 53, 732, 1502 |
| Bme18I | GGWCC | 1 cut(s) | 1363 |
| BmgT120I | GGNCC | 1 cut(s) | 1363 |
| BmiI | GGNNCC | 5 cut(s) | 231, 250, 485, 1149, 1364 |
| BmrFI | CCNGG | 3 cut(s) | 53, 732, 1502 |
| BmrI | ACTGGG | 3 cut(s) | 978, 1036, 1480 |
| BmsI | GCATC | 5 cut(s) | 945, 947, 1301, 1738, 1893 |
| BmtI | GCTAGC | 1 cut(s) | 1727 |
| BmuI | ACTGGG | 3 cut(s) | 978, 1036, 1480 |
| BpiI | GAAGAC | 1 cut(s) | 819 |
| BpmI | CTGGAG | 2 cut(s) | 714, 1448 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1698 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 71 |
| BsaHI | GRCGYC | 3 cut(s) | 56, 62, 249 |
| BsaI | GGTCTC | 1 cut(s) | 1834 |
| BsaJI | CCNNGG | 2 cut(s) | 1251, 1928 |
| BsaWI | WCCGGW | 1 cut(s) | 1548 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1316, 1346 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 554, 1183, 1426 |
| Bse118I | RCCGGY | 4 cut(s) | 245, 251, 1162, 1383 |
| Bse1I | ACTGG | 8 cut(s) | 707, 755, 979, 984, 1042, 1119, 1486, 1518 |
| Bse21I | CCTNAGG | 1 cut(s) | 584 |
| Bse3DI | GCAATG | 2 cut(s) | 1118, 1518 |
| BseBI | CCWGG | 3 cut(s) | 53, 732, 1502 |
| BseDI | CCNNGG | 2 cut(s) | 1251, 1928 |
| BseGI | GGATG | 3 cut(s) | 1292, 1352, 1915 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 554, 1183, 1426 |
| BseMI | GCAATG | 2 cut(s) | 1118, 1518 |
| BseMII | CTCAG | 4 cut(s) | 1077, 1691, 1913, 1934 |
| BseNI | ACTGG | 8 cut(s) | 707, 755, 979, 984, 1042, 1119, 1486, 1518 |
| BseRI | GAGGAG | 3 cut(s) | 476, 638, 1600 |
| BseXI | GCAGC | 8 cut(s) | 105, 336, 681, 947, 1141, 1213, 1428, 1918 |
| BsgI | GTGCAG | 3 cut(s) | 112, 348, 655 |
| BshFI | GGCC | 4 cut(s) | 8, 170, 441, 880 |
| BshNI | GGYRCC | 2 cut(s) | 229, 248 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1273, 1419 |
| BsiSI | CCGG | 5 cut(s) | 246, 252, 1163, 1384, 1549 |
| BslFI | GGGAC | 1 cut(s) | 1376 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 554, 1183, 1426 |
| BsmAI | GTCTC | 5 cut(s) | 511, 1011, 1192, 1834, 1932 |
| BsmBI | CGTCTC | 2 cut(s) | 511, 1932 |
| BsmFI | GGGAC | 1 cut(s) | 1376 |
| BsmI | GAATGC | 1 cut(s) | 937 |
| BsnI | GGCC | 4 cut(s) | 8, 170, 441, 880 |
| Bso31I | GGTCTC | 1 cut(s) | 1834 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1273, 1419 |
| Bsp143I | GATC | 8 cut(s) | 186, 432, 945, 1000, 1349, 1535, 1551, 1630 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 71 |
| BspACI | CCGC | 5 cut(s) | 108, 111, 600, 1166, 1420 |
| BspANI | GGCC | 4 cut(s) | 8, 170, 441, 880 |
| BspCNI | CTCAG | 4 cut(s) | 1078, 1690, 1912, 1933 |
| BspHI | TCATGA | 1 cut(s) | 1447 |
| BspLI | GGNNCC | 5 cut(s) | 231, 250, 485, 1149, 1364 |
| BspMAI | CTGCAG | 1 cut(s) | 176 |
| BspMI | ACCTGC | 2 cut(s) | 504, 1658 |
| BspOI | GCTAGC | 1 cut(s) | 1727 |
| BspPI | GGATC | 3 cut(s) | 1357, 1559, 1625 |
| BspT107I | GGYRCC | 2 cut(s) | 229, 248 |
| BspTNI | GGTCTC | 1 cut(s) | 1834 |
| BsrBI | CCGCTC | 1 cut(s) | 113 |
| BsrDI | GCAATG | 2 cut(s) | 1118, 1518 |
| BsrFI | RCCGGY | 4 cut(s) | 245, 251, 1162, 1383 |
| BsrI | ACTGG | 8 cut(s) | 707, 755, 979, 984, 1042, 1119, 1486, 1518 |
| BssAI | RCCGGY | 4 cut(s) | 245, 251, 1162, 1383 |
| BssECI | CCNNGG | 2 cut(s) | 1251, 1928 |
| BssMI | GATC | 8 cut(s) | 186, 432, 945, 1000, 1349, 1535, 1551, 1630 |
| BssNI | GRCGYC | 3 cut(s) | 56, 62, 249 |
| BssT1I | CCWWGG | 2 cut(s) | 1251, 1928 |
| Bst2UI | CCWGG | 3 cut(s) | 53, 732, 1502 |
| Bst4CI | ACNGT | 6 cut(s) | 21, 260, 299, 518, 747, 1943 |
| Bst6I | CTCTTC | 8 cut(s) | 365, 514, 656, 771, 797, 849, 1573, 1872 |
| BstACI | GRCGYC | 3 cut(s) | 56, 62, 249 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 609, 1109 |
| BstC8I | GCNNGC | 7 cut(s) | 172, 247, 253, 1395, 1424, 1725, 1761 |
| BstDEI | CTNAG | 9 cut(s) | 71, 584, 1086, 1234, 1677, 1698, 1866, 1899, 1920 |
| BstEII | GGTNACC | 1 cut(s) | 977 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1181 |
| BstF5I | GGATG | 3 cut(s) | 1292, 1352, 1915 |
| BstH2I | RGCGCY | 3 cut(s) | 246, 252, 407 |
| BstHHI | GCGC | 4 cut(s) | 245, 251, 406, 476 |
| BstKTI | GATC | 8 cut(s) | 189, 435, 948, 1003, 1352, 1538, 1554, 1633 |
| BstMAI | GTCTC | 5 cut(s) | 511, 1011, 1192, 1834, 1932 |
| BstMBI | GATC | 8 cut(s) | 186, 432, 945, 1000, 1349, 1535, 1551, 1630 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 107, 167, 609, 703, 1109, 1163, 1235, 1423, 1765 |
| BstNI | CCWGG | 3 cut(s) | 53, 732, 1502 |
| BstNSI | RCATGY | 2 cut(s) | 898, 1426 |
| BstPI | GGTNACC | 1 cut(s) | 977 |
| BstSCI | CCNGG | 3 cut(s) | 51, 730, 1500 |
| BstSFI | CTRYAG | 3 cut(s) | 172, 447, 1713 |
| BstV1I | GCAGC | 8 cut(s) | 105, 336, 681, 947, 1141, 1213, 1428, 1918 |
| BstV2I | GAAGAC | 1 cut(s) | 819 |
| BstX2I | RGATCY | 1 cut(s) | 1535 |
| BstYI | RGATCY | 1 cut(s) | 1535 |
| Bsu36I | CCTNAGG | 1 cut(s) | 584 |
| BsuI | GTATCC | 1 cut(s) | 631 |
| BsuRI | GGCC | 4 cut(s) | 8, 170, 441, 880 |
| BtsCI | GGATG | 3 cut(s) | 1292, 1352, 1915 |
| BtsI | GCAGTG | 2 cut(s) | 37, 336 |
| BtsIMutI | CAGTG | 4 cut(s) | 37, 336, 1112, 1511 |
| BveI | ACCTGC | 2 cut(s) | 504, 1658 |
| Cac8I | GCNNGC | 7 cut(s) | 172, 247, 253, 1395, 1424, 1725, 1761 |
| CaiI | CAGNNNCTG | 3 cut(s) | 941, 990, 1048 |
| CciI | TCATGA | 1 cut(s) | 1447 |
| CfoI | GCGC | 4 cut(s) | 245, 251, 406, 476 |
| Cfr10I | RCCGGY | 4 cut(s) | 245, 251, 1162, 1383 |
| Cfr13I | GGNCC | 1 cut(s) | 1363 |
| CseI | GACGC | 2 cut(s) | 45, 70 |
| Csp6I | GTAC | 5 cut(s) | 154, 177, 748, 758, 1209 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1262, 1297 |
| CviAII | CATG | 9 cut(s) | 81, 341, 614, 637, 895, 1378, 1423, 1448, 1574 |
| CviQI | GTAC | 5 cut(s) | 154, 177, 748, 758, 1209 |
| DdeI | CTNAG | 9 cut(s) | 71, 584, 1086, 1234, 1677, 1698, 1866, 1899, 1920 |
| DinI | GGCGCC | 1 cut(s) | 250 |
| DpnI | GATC | 8 cut(s) | 188, 434, 947, 1002, 1351, 1537, 1553, 1632 |
| DpnII | GATC | 8 cut(s) | 186, 432, 945, 1000, 1349, 1535, 1551, 1630 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1370, 1826 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1370, 1826 |
| EaeI | YGGCCR | 1 cut(s) | 878 |
| Eam1104I | CTCTTC | 8 cut(s) | 365, 514, 656, 771, 797, 849, 1573, 1872 |
| EarI | CTCTTC | 8 cut(s) | 365, 514, 656, 771, 797, 849, 1573, 1872 |
| EciI | GGCGGA | 1 cut(s) | 1181 |
| Ecl136II | GAGCTC | 1 cut(s) | 1271 |
| Eco130I | CCWWGG | 2 cut(s) | 1251, 1928 |
| Eco24I | GRGCYC | 1 cut(s) | 1273 |
| Eco31I | GGTCTC | 1 cut(s) | 1834 |
| Eco47I | GGWCC | 1 cut(s) | 1363 |
| Eco53kI | GAGCTC | 1 cut(s) | 1271 |
| Eco57I | CTGAAG | 2 cut(s) | 778, 813 |
| Eco81I | CCTNAGG | 1 cut(s) | 584 |
| Eco91I | GGTNACC | 1 cut(s) | 977 |
| EcoICRI | GAGCTC | 1 cut(s) | 1271 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1181 |
| EcoO65I | GGTNACC | 1 cut(s) | 977 |
| EcoRI | GAATTC | 1 cut(s) | 1852 |
| EcoRII | CCWGG | 3 cut(s) | 51, 730, 1500 |
| EcoT14I | CCWWGG | 2 cut(s) | 1251, 1928 |
| EcoT22I | ATGCAT | 1 cut(s) | 960 |
| EcoT38I | GRGCYC | 1 cut(s) | 1273 |
| EgeI | GGCGCC | 1 cut(s) | 250 |
| EheI | GGCGCC | 1 cut(s) | 250 |
| ErhI | CCWWGG | 2 cut(s) | 1251, 1928 |
| Esp3I | CGTCTC | 2 cut(s) | 511, 1932 |
| FaeI | CATG | 9 cut(s) | 84, 344, 617, 640, 898, 1381, 1426, 1451, 1577 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1046, 1078 |
| FaqI | GGGAC | 1 cut(s) | 1376 |
| FatI | CATG | 9 cut(s) | 80, 340, 613, 636, 894, 1377, 1422, 1447, 1573 |
| FauNDI | CATATG | 1 cut(s) | 1203 |
| FbaI | TGATCA | 4 cut(s) | 186, 432, 945, 1000 |
| FblI | GTMKAC | 1 cut(s) | 59 |
| FokI | GGATG | 3 cut(s) | 1279, 1339, 1902 |
| FriOI | GRGCYC | 1 cut(s) | 1273 |
| FspBI | CTAG | 4 cut(s) | 821, 1188, 1647, 1724 |
| GlaI | GCGC | 4 cut(s) | 244, 250, 405, 475 |
| GsuI | CTGGAG | 2 cut(s) | 714, 1448 |
| HaeII | RGCGCY | 3 cut(s) | 246, 252, 407 |
| HaeIII | GGCC | 4 cut(s) | 8, 170, 441, 880 |
| HapII | CCGG | 5 cut(s) | 246, 252, 1163, 1384, 1549 |
| HgaI | GACGC | 2 cut(s) | 45, 70 |
| HhaI | GCGC | 4 cut(s) | 245, 251, 406, 476 |
| Hin1I | GRCGYC | 3 cut(s) | 56, 62, 249 |
| Hin1II | CATG | 9 cut(s) | 84, 344, 617, 640, 898, 1381, 1426, 1451, 1577 |
| Hin6I | GCGC | 4 cut(s) | 243, 249, 404, 474 |
| HinP1I | GCGC | 4 cut(s) | 243, 249, 404, 474 |
| HincII | GTYRAC | 2 cut(s) | 60, 1375 |
| HindII | GTYRAC | 2 cut(s) | 60, 1375 |
| HindIII | AAGCTT | 3 cut(s) | 12, 384, 1060 |
| HpaII | CCGG | 5 cut(s) | 246, 252, 1163, 1384, 1549 |
| HphI | GGTGA | 6 cut(s) | 9, 272, 537, 563, 779, 782 |
| Hpy166II | GTNNAC | 6 cut(s) | 60, 545, 969, 1142, 1211, 1375 |
| Hpy188I | TCNGA | 7 cut(s) | 133, 143, 202, 1050, 1244, 1309, 1902 |
| Hpy188III | TCNNGA | 6 cut(s) | 949, 1085, 1131, 1448, 1634, 1679 |
| Hpy8I | GTNNAC | 6 cut(s) | 60, 545, 969, 1142, 1211, 1375 |
| Hpy99I | CGWCG | 3 cut(s) | 61, 64, 260 |
| HpyAV | CCTTC | 4 cut(s) | 407, 547, 1177, 1345 |
| HpyCH4III | ACNGT | 6 cut(s) | 21, 260, 299, 518, 747, 1943 |
| HpyCH4IV | ACGT | 1 cut(s) | 1839 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 107, 167, 609, 703, 1109, 1163, 1235, 1423, 1765 |
| HpyF3I | CTNAG | 9 cut(s) | 71, 584, 1086, 1234, 1677, 1698, 1866, 1899, 1920 |
| HpySE526I | ACGT | 1 cut(s) | 1839 |
| Hsp92I | GRCGYC | 3 cut(s) | 56, 62, 249 |
| Hsp92II | CATG | 9 cut(s) | 84, 344, 617, 640, 898, 1381, 1426, 1451, 1577 |
| HspAI | GCGC | 4 cut(s) | 243, 249, 404, 474 |
| KasI | GGCGCC | 1 cut(s) | 248 |
| KroI | GCCGGC | 2 cut(s) | 245, 251 |
| KroNI | GCCGGC | 2 cut(s) | 247, 253 |
| Ksp22I | TGATCA | 4 cut(s) | 186, 432, 945, 1000 |
| Kzo9I | GATC | 8 cut(s) | 186, 432, 945, 1000, 1349, 1535, 1551, 1630 |
| LmnI | GCTCC | 8 cut(s) | 118, 133, 383, 489, 661, 914, 1422, 1503 |
| Lsp1109I | GCAGC | 8 cut(s) | 105, 336, 681, 947, 1141, 1213, 1428, 1918 |
| LweI | GCATC | 5 cut(s) | 945, 947, 1301, 1738, 1893 |
| MaeI | CTAG | 4 cut(s) | 821, 1188, 1647, 1724 |
| MaeII | ACGT | 1 cut(s) | 1839 |
| MaeIII | GTNAC | 5 cut(s) | 260, 293, 491, 977, 1322 |
| MalI | GATC | 8 cut(s) | 188, 434, 947, 1002, 1351, 1537, 1553, 1632 |
| MbiI | CCGCTC | 1 cut(s) | 113 |
| MboI | GATC | 8 cut(s) | 186, 432, 945, 1000, 1349, 1535, 1551, 1630 |
| MflI | RGATCY | 1 cut(s) | 1535 |
| MhlI | GDGCHC | 2 cut(s) | 1273, 1419 |
| MlsI | TGGCCA | 1 cut(s) | 880 |
| MluCI | AATT | 5 cut(s) | 604, 814, 1787, 1852, 1889 |
| MluNI | TGGCCA | 1 cut(s) | 880 |
| Mly113I | GGCGCC | 1 cut(s) | 249 |
| MlyI | GAGTC | 7 cut(s) | 86, 639, 674, 1097, 1325, 1669, 1676 |
| MmeI | TCCRAC | 1 cut(s) | 180 |
| Mox20I | TGGCCA | 1 cut(s) | 880 |
| Mph1103I | ATGCAT | 1 cut(s) | 960 |
| MreI | CGCCGGCG | 2 cut(s) | 245, 251 |
| MroNI | GCCGGC | 2 cut(s) | 245, 251 |
| MroXI | GAANNNNTTC | 3 cut(s) | 567, 1061, 1080 |
| MscI | TGGCCA | 1 cut(s) | 880 |
| MseI | TTAA | 1 cut(s) | 1257 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1649 |
| Msp20I | TGGCCA | 1 cut(s) | 880 |
| MspA1I | CMGCKG | 1 cut(s) | 1154 |
| MspI | CCGG | 5 cut(s) | 246, 252, 1163, 1384, 1549 |
| MspR9I | CCNGG | 3 cut(s) | 53, 732, 1502 |
| Mva1269I | GAATGC | 1 cut(s) | 937 |
| MvaI | CCWGG | 3 cut(s) | 53, 732, 1502 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 107, 167, 609, 703, 1109, 1163, 1235, 1423, 1765 |
| NaeI | GCCGGC | 2 cut(s) | 247, 253 |
| NarI | GGCGCC | 1 cut(s) | 249 |
| NdeI | CATATG | 1 cut(s) | 1203 |
| NdeII | GATC | 8 cut(s) | 186, 432, 945, 1000, 1349, 1535, 1551, 1630 |
| NgoMIV | GCCGGC | 2 cut(s) | 245, 251 |
| NheI | GCTAGC | 1 cut(s) | 1723 |
| NlaIII | CATG | 9 cut(s) | 84, 344, 617, 640, 898, 1381, 1426, 1451, 1577 |
| NlaIV | GGNNCC | 5 cut(s) | 231, 250, 485, 1149, 1364 |
| NmeAIII | GCCGAG | 1 cut(s) | 146 |
| NmuCI | GTSAC | 1 cut(s) | 260 |
| NsiI | ATGCAT | 1 cut(s) | 960 |
| NspI | RCATGY | 2 cut(s) | 898, 1426 |
| PaeI | GCATGC | 1 cut(s) | 1426 |
| PagI | TCATGA | 1 cut(s) | 1447 |
| PciI | ACATGT | 1 cut(s) | 894 |
| PctI | GAATGC | 1 cut(s) | 937 |
| PdiI | GCCGGC | 2 cut(s) | 247, 253 |
| PdmI | GAANNNNTTC | 3 cut(s) | 567, 1061, 1080 |
| PfeI | GAWTC | 3 cut(s) | 138, 563, 1081 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 554 |
| PleI | GAGTC | 7 cut(s) | 85, 639, 673, 1096, 1325, 1669, 1676 |
| PluTI | GGCGCC | 1 cut(s) | 252 |
| PpsI | GAGTC | 7 cut(s) | 85, 639, 673, 1096, 1325, 1669, 1676 |
| PscI | ACATGT | 1 cut(s) | 894 |
| PsiI | TTATAA | 1 cut(s) | 813 |
| Psp124BI | GAGCTC | 1 cut(s) | 1273 |
| Psp6I | CCWGG | 3 cut(s) | 51, 730, 1500 |
| PspEI | GGTNACC | 1 cut(s) | 977 |
| PspGI | CCWGG | 3 cut(s) | 51, 730, 1500 |
| PspN4I | GGNNCC | 5 cut(s) | 231, 250, 485, 1149, 1364 |
| PspPI | GGNCC | 1 cut(s) | 1363 |
| PstI | CTGCAG | 1 cut(s) | 176 |
| PstNI | CAGNNNCTG | 3 cut(s) | 941, 990, 1048 |
| PsuI | RGATCY | 1 cut(s) | 1535 |
| PvuII | CAGCTG | 1 cut(s) | 1154 |
| RsaI | GTAC | 5 cut(s) | 155, 178, 749, 759, 1210 |
| RsaNI | GTAC | 5 cut(s) | 154, 177, 748, 758, 1209 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1649 |
| SacI | GAGCTC | 1 cut(s) | 1273 |
| SalI | GTCGAC | 1 cut(s) | 58 |
| SaqAI | TTAA | 1 cut(s) | 1257 |
| Sau3AI | GATC | 8 cut(s) | 186, 432, 945, 1000, 1349, 1535, 1551, 1630 |
| Sau96I | GGNCC | 1 cut(s) | 1363 |
| ScaI | AGTACT | 2 cut(s) | 749, 759 |
| SchI | GAGTC | 7 cut(s) | 86, 639, 674, 1097, 1325, 1669, 1676 |
| ScrFI | CCNGG | 3 cut(s) | 53, 732, 1502 |
| SduI | GDGCHC | 2 cut(s) | 1273, 1419 |
| SfaNI | GCATC | 5 cut(s) | 945, 947, 1301, 1738, 1893 |
| SfcI | CTRYAG | 3 cut(s) | 172, 447, 1713 |
| SfoI | GGCGCC | 1 cut(s) | 250 |
| SgrAI | CRCCGGYG | 2 cut(s) | 245, 251 |
| SgrDI | CGTCGACG | 1 cut(s) | 58 |
| SinI | GGWCC | 1 cut(s) | 1363 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1649 |
| SpeI | ACTAGT | 1 cut(s) | 1646 |
| SphI | GCATGC | 1 cut(s) | 1426 |
| Sse9I | AATT | 5 cut(s) | 604, 814, 1787, 1852, 1889 |
| SsiI | CCGC | 5 cut(s) | 108, 111, 600, 1166, 1420 |
| SspDI | GGCGCC | 1 cut(s) | 248 |
| SspMI | CTAG | 4 cut(s) | 821, 1188, 1647, 1724 |
| SstI | GAGCTC | 1 cut(s) | 1273 |
| StyD4I | CCNGG | 3 cut(s) | 51, 730, 1500 |
| StyI | CCWWGG | 2 cut(s) | 1251, 1928 |
| TaaI | ACNGT | 6 cut(s) | 21, 260, 299, 518, 747, 1943 |
| TaiI | ACGT | 1 cut(s) | 1842 |
| TaqI | TCGA | 3 cut(s) | 59, 1602, 1856 |
| TasI | AATT | 5 cut(s) | 604, 814, 1787, 1852, 1889 |
| TatI | WGTACW | 2 cut(s) | 747, 757 |
| TauI | GCSGC | 3 cut(s) | 110, 113, 603 |
| TfiI | GAWTC | 3 cut(s) | 138, 563, 1081 |
| Tru1I | TTAA | 1 cut(s) | 1257 |
| Tru9I | TTAA | 1 cut(s) | 1257 |
| TscAI | CASTG | 4 cut(s) | 37, 336, 1119, 1518 |
| TseFI | GTSAC | 1 cut(s) | 260 |
| TseI | GCWGC | 8 cut(s) | 93, 349, 694, 935, 1154, 1226, 1441, 1906 |
| Tsp45I | GTSAC | 1 cut(s) | 260 |
| TspDTI | ATGAA | 4 cut(s) | 329, 674, 1113, 1394 |
| TspGWI | ACGGA | 2 cut(s) | 206, 493 |
| TspRI | CASTG | 4 cut(s) | 37, 336, 1119, 1518 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 554 |
| VpaK11BI | GGWCC | 1 cut(s) | 1363 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1181 |
| XapI | RAATTY | 2 cut(s) | 1787, 1852 |
| XceI | RCATGY | 2 cut(s) | 898, 1426 |
| XmiI | GTMKAC | 1 cut(s) | 59 |
| XmnI | GAANNNNTTC | 3 cut(s) | 567, 1061, 1080 |
| XspI | CTAG | 4 cut(s) | 821, 1188, 1647, 1724 |
| ZrmI | AGTACT | 2 cut(s) | 749, 759 |
| Zsp2I | ATGCAT | 1 cut(s) | 960 |