FvH4_2g15130

FR47-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013000
Physical Location & Seq
Forward (+)
13255770 .. 13257550
1781 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g15130.t2

Sequence Viewer

Length: 477 bp
ATGGCGGCCGGGGACATTGTGGAGCTCCAAAGAAACTCTCCCAAGTGGGTAACGGTAGTGGAAGACATCGTGAAACTAGAGAGGAAGATCTTTCCCAAACATGAATCCCTTGCTAAAAGCTTTCATGAAGAACTGAAAAAGAAGAACAGTGGGTTGCTTTACATCGAGGAGTTAGATGGTTCAGTTGCTGGCTATGTCATGTACTCTTGGCCTTCTTCCCTCTACGCCTCTATCACGAAGCTCGCAGTGAAGGATAGTTGCAGGAGGCAAGGCTATGGAGAGGCTCTGCTGACAGCAGCCATTCAGAAATGCCGAACCCGAAAAGTGGGGCGAATATCACTTCACGTTGATCCTATGAGAACTCCCGCCATGAATCTTTACAAGAAAGTCGGTTTCAAAGTTGACAACCTCATACAAAGTTACTACTCGTCGGATCGGAATGCCTACAGACTATACTTGGATTTTGATGCCAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1

Protein Analysis

159

Amino Acids

18.03

Weight (kDa)

9.35

Isoelectric Point (pI)

32.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_1 PF00583 23 - 132 1.5e-18 Acetyltransferase (GNAT) family
Acetyltransf_10 PF13673 30 - 136 7.4e-11 Acetyltransferase (GNAT) domain
Acetyltransf_7 PF13508 51 - 133 8.1e-12 Acetyltransferase (GNAT) domain
FR47 PF08445 76 - 135 1.1e-07 FR47-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013000)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03650
fragaria_vesca FvH4_2g15130 FvH4_2g15130
malus_domestica MD09G1249800.v1.1
prunus_persica Prupe.3G155400_v2.0.a1
pyrus_communis pycom09g16660
rosa_chinensis RchiOBHm_Chr6g0277731
rosa_laevigata RLG00000013279
rosa_multiflora Rmu_sc0007109.1_g000020
rosa_roxburghii Rroxscaffold_7G00190990
rosa_rugosa Rorug06G0110500 Rorug06G0110600 Rorug06G0110700
rosa_samantha Rh6AG221200 Rh6BG225100 Rh6CG227600 Rh6DG218300
rosa_wichuraiana Rw6G019380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 5, 366
AclWI GGATC 2 cut(s) 344, 441
AcoI YGGCCR 1 cut(s) 6
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 1 cut(s) 325
AgsI TTSAA 1 cut(s) 397
AluBI AGCT 4 cut(s) 25, 120, 241, 474
AluI AGCT 4 cut(s) 25, 120, 241, 474
Alw21I GWGCWC 1 cut(s) 27
AlwI GGATC 2 cut(s) 344, 441
AlwNI CAGNNNCTG 1 cut(s) 188
AoxI GGCC 2 cut(s) 6, 209
ApeKI GCWGC 1 cut(s) 296
AsuC2I CCSGG 1 cut(s) 10
BanII GRGCYC 1 cut(s) 27
BbsI GAAGAC 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 27
BbvI GCAGC 1 cut(s) 308
BccI CCATC 1 cut(s) 170
BcnI CCSGG 1 cut(s) 10
BfaI CTAG 2 cut(s) 77, 475
BfmI CTRYAG 1 cut(s) 445
BglII AGATCT 1 cut(s) 87
BisI GCNGC 2 cut(s) 6, 297
BlsI GCNGC 2 cut(s) 7, 298
Bme1390I CCNGG 1 cut(s) 10
BmrFI CCNGG 1 cut(s) 10
BmsI GCATC 1 cut(s) 457
BpiI GAAGAC 1 cut(s) 69
BpuMI CCSGG 1 cut(s) 10
BsaJI CCNNGG 1 cut(s) 9
Bsc4I CCNNNNNNNGG 1 cut(s) 325
BseDI CCNNGG 1 cut(s) 9
BseLI CCNNNNNNNGG 1 cut(s) 325
BseRI GAGGAG 1 cut(s) 182
BseX3I CGGCCG 1 cut(s) 6
BseXI GCAGC 1 cut(s) 308
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 2 cut(s) 8, 211
BsiEI CGRYCG 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 27
BsiSI CCGG 1 cut(s) 9
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 1 cut(s) 325
BsmFI GGGAC 1 cut(s) 26
BsmI GAATGC 1 cut(s) 445
BsnI GGCC 2 cut(s) 8, 211
Bsp1286I GDGCHC 1 cut(s) 27
Bsp143I GATC 3 cut(s) 87, 349, 433
BspACI CCGC 2 cut(s) 5, 366
BspANI GGCC 2 cut(s) 8, 211
BspHI TCATGA 1 cut(s) 124
BspPI GGATC 2 cut(s) 344, 441
BssECI CCNNGG 1 cut(s) 9
BssMI GATC 3 cut(s) 87, 349, 433
Bst4CI ACNGT 2 cut(s) 55, 149
BstC8I GCNNGC 3 cut(s) 190, 243, 472
BstKTI GATC 3 cut(s) 90, 352, 436
BstMBI GATC 3 cut(s) 87, 349, 433
BstMCI CGRYCG 1 cut(s) 9
BstSCI CCNGG 1 cut(s) 8
BstSFI CTRYAG 1 cut(s) 445
BstV1I GCAGC 1 cut(s) 308
BstV2I GAAGAC 1 cut(s) 69
BstX2I RGATCY 1 cut(s) 87
BstYI RGATCY 1 cut(s) 87
BstZI CGGCCG 1 cut(s) 6
BsuRI GGCC 2 cut(s) 8, 211
BtsI GCAGTG 1 cut(s) 252
BtsIMutI CAGTG 2 cut(s) 154, 252
Cac8I GCNNGC 3 cut(s) 190, 243, 472
CaiI CAGNNNCTG 1 cut(s) 188
CciI TCATGA 1 cut(s) 124
Csp6I GTAC 1 cut(s) 202
CviAII CATG 4 cut(s) 101, 125, 199, 370
CviQI GTAC 1 cut(s) 202
DpnI GATC 3 cut(s) 89, 351, 435
DpnII GATC 3 cut(s) 87, 349, 433
EaeI YGGCCR 1 cut(s) 6
EagI CGGCCG 1 cut(s) 6
Ecl136II GAGCTC 1 cut(s) 25
EclXI CGGCCG 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 27
Eco52I CGGCCG 1 cut(s) 6
Eco53kI GAGCTC 1 cut(s) 25
EcoICRI GAGCTC 1 cut(s) 25
EcoT38I GRGCYC 1 cut(s) 27
FaeI CATG 4 cut(s) 104, 128, 202, 373
FaiI YATR 9 cut(s) 102, 126, 195, 200, 276, 356, 371, 413, 454
FaqI GGGAC 1 cut(s) 26
FatI CATG 4 cut(s) 100, 124, 198, 369
FauI CCCGC 1 cut(s) 373
Fnu4HI GCNGC 2 cut(s) 6, 297
FriOI GRGCYC 1 cut(s) 27
Fsp4HI GCNGC 2 cut(s) 6, 297
FspBI CTAG 2 cut(s) 77, 475
GluI GCNGC 2 cut(s) 6, 297
HaeIII GGCC 2 cut(s) 8, 211
HapII CCGG 1 cut(s) 9
Hin1II CATG 4 cut(s) 104, 128, 202, 373
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HindIII AAGCTT 1 cut(s) 118
HinfI GANTC 2 cut(s) 104, 373
HpaII CCGG 1 cut(s) 9
Hpy166II GTNNAC 1 cut(s) 403
Hpy188I TCNGA 3 cut(s) 306, 433, 438
Hpy188III TCNNGA 3 cut(s) 70, 125, 235
Hpy8I GTNNAC 1 cut(s) 403
Hpy99I CGWCG 1 cut(s) 433
HpyAV CCTTC 2 cut(s) 222, 244
HpyCH4III ACNGT 2 cut(s) 55, 149
HpyCH4IV ACGT 1 cut(s) 345
HpyCH4V TGCA 1 cut(s) 261
HpySE526I ACGT 1 cut(s) 345
Hsp92II CATG 4 cut(s) 104, 128, 202, 373
Kzo9I GATC 3 cut(s) 87, 349, 433
LmnI GCTCC 2 cut(s) 22, 30
LpnPI CCDG 3 cut(s) 22, 174, 247
Lsp1109I GCAGC 1 cut(s) 308
LweI GCATC 1 cut(s) 457
MaeI CTAG 2 cut(s) 77, 475
MaeII ACGT 1 cut(s) 345
MaeIII GTNAC 2 cut(s) 49, 419
MalI GATC 3 cut(s) 89, 351, 435
MboI GATC 3 cut(s) 87, 349, 433
MboII GAAGA 5 cut(s) 74, 97, 140, 154, 207
MflI RGATCY 1 cut(s) 87
MhlI GDGCHC 1 cut(s) 27
MmeI TCCRAC 1 cut(s) 411
MnlI CCTC 7 cut(s) 75, 160, 230, 238, 258, 274, 419
MspI CCGG 1 cut(s) 9
MspR9I CCNGG 1 cut(s) 10
Mva1269I GAATGC 1 cut(s) 445
NciI CCSGG 1 cut(s) 10
NdeII GATC 3 cut(s) 87, 349, 433
NlaIII CATG 4 cut(s) 104, 128, 202, 373
PagI TCATGA 1 cut(s) 124
PctI GAATGC 1 cut(s) 445
PfeI GAWTC 2 cut(s) 104, 373
PkrI GCNGC 2 cut(s) 7, 298
Psp124BI GAGCTC 1 cut(s) 27
PstNI CAGNNNCTG 1 cut(s) 188
PsuI RGATCY 1 cut(s) 87
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
SacI GAGCTC 1 cut(s) 27
SatI GCNGC 2 cut(s) 6, 297
Sau3AI GATC 3 cut(s) 87, 349, 433
ScrFI CCNGG 1 cut(s) 10
SduI GDGCHC 1 cut(s) 27
SetI ASST 6 cut(s) 27, 122, 243, 348, 411, 476
SfaNI GCATC 1 cut(s) 457
SfcI CTRYAG 1 cut(s) 445
SsiI CCGC 2 cut(s) 5, 366
SspMI CTAG 2 cut(s) 77, 475
SstI GAGCTC 1 cut(s) 27
StyD4I CCNGG 1 cut(s) 8
TaaI ACNGT 2 cut(s) 55, 149
TaiI ACGT 1 cut(s) 348
TaqI TCGA 1 cut(s) 165
TatI WGTACW 1 cut(s) 201
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 2 cut(s) 104, 373
TscAI CASTG 2 cut(s) 154, 252
TseI GCWGC 1 cut(s) 296
TspDTI ATGAA 4 cut(s) 113, 117, 141, 386
TspRI CASTG 2 cut(s) 154, 252
XspI CTAG 2 cut(s) 77, 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.