MD09G1249800.v1.1

FR47-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0013000
Physical Location & Seq
Forward (+)
31949639 .. 31950821
1183 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1249800.v1.1.491

Sequence Viewer

Length: 492 bp
ATGGCGGCAGCTACAGGGGTCATCGTGGAGCTTCAGAGAAACTCTCCCAACTGGGCGACGATAGTGGAAGAAATAATGAAGCTAGAGCGGAAGATCTTCCCGAAACACGAATCCCTTGCCCGAAGCTTTGACGAAGAACTGAGAAAGAAAAACAGCGGGCTTCTATATTACACGGAACAACATATAGATGGTGAAGAAGTTGCAGGCTATGTCATGTACTCTTGGCCTTCTTCCCTGTACGCTTCCATCACAAAGCTCGCAGTGAAGGATACTTGTCGGAAGCAAGGCTACGGAGAAGCACTACTGACAGCAGCCATTCAGAAATGTAGAACAAGAAATGTCCAGCGCATAACACTTCACGTTGATCCCTCAAGAACTCCTGCTGTGAATCTTTACAAGAAATTCGGTTTCAAAGTTGACAACCTCATACAAGGTTACTACTCTTCGGATCGAAATGCCTATAGAATGTACCTAGACTTTGATGCCAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1

Protein Analysis

164

Amino Acids

18.71

Weight (kDa)

8.98

Isoelectric Point (pI)

37.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_1 PF00583 24 - 137 2.4e-19 Acetyltransferase (GNAT) family
Acetyltransf_10 PF13673 37 - 140 3.9e-11 Acetyltransferase (GNAT) domain
Acetyltransf_7 PF13508 63 - 138 6.8e-12 Acetyltransferase (GNAT) domain
Acetyltransf_4 PF13420 64 - 150 3.4e-06 Acetyltransferase (GNAT) domain
FR47 PF08445 81 - 140 4.4e-08 FR47-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013000)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03650
fragaria_vesca FvH4_2g15130 FvH4_2g15130
malus_domestica MD09G1249800.v1.1
prunus_persica Prupe.3G155400_v2.0.a1
pyrus_communis pycom09g16660
rosa_chinensis RchiOBHm_Chr6g0277731
rosa_laevigata RLG00000013279
rosa_multiflora Rmu_sc0007109.1_g000020
rosa_roxburghii Rroxscaffold_7G00190990
rosa_rugosa Rorug06G0110500 Rorug06G0110600 Rorug06G0110700
rosa_samantha Rh6AG221200 Rh6BG225100 Rh6CG227600 Rh6DG218300
rosa_wichuraiana Rw6G019380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 88
AciI CCGC 3 cut(s) 5, 88, 156
AclWI GGATC 2 cut(s) 359, 456
AcsI RAATTY 1 cut(s) 401
AcuI CTGAAG 1 cut(s) 17
AfaI GTAC 3 cut(s) 218, 239, 470
AgsI TTSAA 1 cut(s) 412
AluBI AGCT 6 cut(s) 11, 31, 82, 126, 256, 489
AluI AGCT 6 cut(s) 11, 31, 82, 126, 256, 489
AlwI GGATC 2 cut(s) 359, 456
AoxI GGCC 1 cut(s) 224
ApeKI GCWGC 2 cut(s) 8, 311
ApoI RAATTY 1 cut(s) 401
Asp700I GAANNNNTTC 1 cut(s) 95
AspLEI GCGC 1 cut(s) 348
AsuHPI GGTGA 1 cut(s) 203
BarI GAAGNNNNNNTAC 2 cut(s) 272, 304
BbvI GCAGC 2 cut(s) 20, 323
BccI CCATC 2 cut(s) 182, 254
BcgI CGANNNNNNTGC 2 cut(s) 98, 132
BciVI GTATCC 1 cut(s) 262
BfaI CTAG 3 cut(s) 83, 473, 490
BfmI CTRYAG 2 cut(s) 12, 460
BfuI GTATCC 1 cut(s) 262
BglII AGATCT 1 cut(s) 93
BisI GCNGC 3 cut(s) 6, 9, 312
BlsI GCNGC 3 cut(s) 7, 10, 313
BmrI ACTGGG 1 cut(s) 61
BmsI GCATC 1 cut(s) 472
BmuI ACTGGG 1 cut(s) 61
BplI GAGNNNNNCTC 2 cut(s) 28, 60
BpuEI CTTGAG 1 cut(s) 355
Bse1I ACTGG 1 cut(s) 56
BseMII CTCAG 1 cut(s) 131
BseNI ACTGG 1 cut(s) 56
BseXI GCAGC 2 cut(s) 20, 323
BshFI GGCC 1 cut(s) 226
BsnI GGCC 1 cut(s) 226
Bsp143I GATC 3 cut(s) 93, 364, 448
BspACI CCGC 3 cut(s) 5, 88, 156
BspANI GGCC 1 cut(s) 226
BspCNI CTCAG 1 cut(s) 132
BspPI GGATC 2 cut(s) 359, 456
BsrBI CCGCTC 1 cut(s) 88
BsrI ACTGG 1 cut(s) 56
BssMI GATC 3 cut(s) 93, 364, 448
Bst6I CTCTTC 1 cut(s) 448
BstC8I GCNNGC 4 cut(s) 158, 205, 258, 487
BstDEI CTNAG 1 cut(s) 140
BstHHI GCGC 1 cut(s) 348
BstKTI GATC 3 cut(s) 96, 367, 451
BstMBI GATC 3 cut(s) 93, 364, 448
BstSFI CTRYAG 2 cut(s) 12, 460
BstV1I GCAGC 2 cut(s) 20, 323
BstX2I RGATCY 1 cut(s) 93
BstYI RGATCY 1 cut(s) 93
BsuI GTATCC 1 cut(s) 262
BsuRI GGCC 1 cut(s) 226
BtsI GCAGTG 1 cut(s) 267
BtsIMutI CAGTG 1 cut(s) 267
Cac8I GCNNGC 4 cut(s) 158, 205, 258, 487
CfoI GCGC 1 cut(s) 348
Csp6I GTAC 3 cut(s) 217, 238, 469
CviAII CATG 1 cut(s) 214
CviQI GTAC 3 cut(s) 217, 238, 469
DdeI CTNAG 1 cut(s) 140
DpnI GATC 3 cut(s) 95, 366, 450
DpnII GATC 3 cut(s) 93, 364, 448
Eam1104I CTCTTC 1 cut(s) 448
EarI CTCTTC 1 cut(s) 448
Eco57I CTGAAG 1 cut(s) 17
FaeI CATG 1 cut(s) 217
FaiI YATR 8 cut(s) 166, 183, 185, 210, 215, 350, 428, 462
FatI CATG 1 cut(s) 213
FauI CCCGC 1 cut(s) 149
Fnu4HI GCNGC 3 cut(s) 6, 9, 312
Fsp4HI GCNGC 3 cut(s) 6, 9, 312
FspBI CTAG 3 cut(s) 83, 473, 490
GlaI GCGC 1 cut(s) 347
GluI GCNGC 3 cut(s) 6, 9, 312
HaeIII GGCC 1 cut(s) 226
HhaI GCGC 1 cut(s) 348
Hin1II CATG 1 cut(s) 217
Hin6I GCGC 1 cut(s) 346
HinP1I GCGC 1 cut(s) 346
HincII GTYRAC 1 cut(s) 418
HindII GTYRAC 1 cut(s) 418
HindIII AAGCTT 1 cut(s) 124
HinfI GANTC 2 cut(s) 110, 388
HphI GGTGA 1 cut(s) 203
Hpy166II GTNNAC 1 cut(s) 418
Hpy188I TCNGA 4 cut(s) 36, 279, 321, 448
Hpy188III TCNNGA 2 cut(s) 100, 372
Hpy8I GTNNAC 1 cut(s) 418
Hpy99I CGWCG 1 cut(s) 61
HpyAV CCTTC 2 cut(s) 237, 259
HpyCH4IV ACGT 1 cut(s) 360
HpyCH4V TGCA 1 cut(s) 203
HpyF3I CTNAG 1 cut(s) 140
HpySE526I ACGT 1 cut(s) 360
Hsp92II CATG 1 cut(s) 217
HspAI GCGC 1 cut(s) 346
Kzo9I GATC 3 cut(s) 93, 364, 448
LmnI GCTCC 1 cut(s) 28
LpnPI CCDG 5 cut(s) 37, 189, 248, 356, 393
Lsp1109I GCAGC 2 cut(s) 20, 323
LweI GCATC 1 cut(s) 472
MaeI CTAG 3 cut(s) 83, 473, 490
MaeII ACGT 1 cut(s) 360
MaeIII GTNAC 1 cut(s) 434
MalI GATC 3 cut(s) 95, 366, 450
MbiI CCGCTC 1 cut(s) 88
MboI GATC 3 cut(s) 93, 364, 448
MboII GAAGA 7 cut(s) 80, 88, 103, 146, 206, 222, 435
MflI RGATCY 1 cut(s) 93
MluCI AATT 1 cut(s) 401
MmeI TCCRAC 1 cut(s) 257
MnlI CCTC 2 cut(s) 379, 434
MroXI GAANNNNTTC 1 cut(s) 95
MslI CAYNNNNRTG 1 cut(s) 186
MspA1I CMGCKG 1 cut(s) 156
NdeII GATC 3 cut(s) 93, 364, 448
NlaIII CATG 1 cut(s) 217
PdmI GAANNNNTTC 1 cut(s) 95
PfeI GAWTC 2 cut(s) 110, 388
PkrI GCNGC 3 cut(s) 7, 10, 313
PsuI RGATCY 1 cut(s) 93
RsaI GTAC 3 cut(s) 218, 239, 470
RsaNI GTAC 3 cut(s) 217, 238, 469
RseI CAYNNNNRTG 1 cut(s) 186
SatI GCNGC 3 cut(s) 6, 9, 312
Sau3AI GATC 3 cut(s) 93, 364, 448
SfaNI GCATC 1 cut(s) 472
SfcI CTRYAG 2 cut(s) 12, 460
SmiMI CAYNNNNRTG 1 cut(s) 186
SmlI CTYRAG 1 cut(s) 370
SmoI CTYRAG 1 cut(s) 370
Sse9I AATT 1 cut(s) 401
SsiI CCGC 3 cut(s) 5, 88, 156
SspMI CTAG 3 cut(s) 83, 473, 490
TaiI ACGT 1 cut(s) 363
TaqI TCGA 1 cut(s) 451
TasI AATT 1 cut(s) 401
TatI WGTACW 1 cut(s) 216
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 2 cut(s) 110, 388
TscAI CASTG 1 cut(s) 267
TseI GCWGC 2 cut(s) 8, 311
TspDTI ATGAA 1 cut(s) 92
TspGWI ACGGA 2 cut(s) 188, 306
TspRI CASTG 1 cut(s) 267
XapI RAATTY 1 cut(s) 401
XmnI GAANNNNTTC 1 cut(s) 95
XspI CTAG 3 cut(s) 83, 473, 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.