Prupe.3G155400_v2.0.a1

FR47-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0013000
Physical Location & Seq
Forward (+)
17365901 .. 17367408
1508 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G155400.1

Sequence Viewer

Length: 477 bp
ATGGCAACGGGGGTCATTGTGGAGCTCCAAAGAAACTCTCCCAACTGGGGCACGGTAGTGGAAGACATAGTGAAGCTAGAGCAAAAGATCTTTCCCAAACATGAATCTCTTGCTAGAAGCTTTGATGCAGAACTGAGAAAGAAGAACAGTGGATTGCTTTACAGGGAGGTAGATGGTGAAGTTGCAGGCTATGTCATGTATTCCTGGCCTTCTTCCCTGTCCGCTTCTATCACAAAGCTCGCAGTGAGGGATGCTTGTAGGAAGCAAGGCTATGGAGAGGCACTGCTGACAGCAGCCATTCAGAAATGCAGAACCAGAAATGTGCAGCGCATAACGCTTCACGTTGATCCCTTGAGGACTCCTGCCGTGAATCTTTACAAGAAACTCGGTTTCAAAATCGATAACCTCATAGAAGGTTACTACTCTTCCGATCGAAATGCCTATAGAATGTACTTGGATTTTGATGCCAGCCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1

Protein Analysis

159

Amino Acids

17.95

Weight (kDa)

9.2

Isoelectric Point (pI)

31.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013000)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03650
fragaria_vesca FvH4_2g15130 FvH4_2g15130
malus_domestica MD09G1249800.v1.1
prunus_persica Prupe.3G155400_v2.0.a1
pyrus_communis pycom09g16660
rosa_chinensis RchiOBHm_Chr6g0277731
rosa_laevigata RLG00000013279
rosa_multiflora Rmu_sc0007109.1_g000020
rosa_roxburghii Rroxscaffold_7G00190990
rosa_rugosa Rorug06G0110500 Rorug06G0110600 Rorug06G0110700
rosa_samantha Rh6AG221200 Rh6BG225100 Rh6CG227600 Rh6DG218300
rosa_wichuraiana Rw6G019380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 222
AclWI GGATC 1 cut(s) 341
AfaI GTAC 1 cut(s) 452
AfiI CCNNNNNNNGG 1 cut(s) 47
AgsI TTSAA 1 cut(s) 394
AjnI CCWGG 1 cut(s) 203
AleI CACNNNNGTG 1 cut(s) 56
AluBI AGCT 4 cut(s) 25, 76, 120, 238
AluI AGCT 4 cut(s) 25, 76, 120, 238
Alw21I GWGCWC 1 cut(s) 27
AlwI GGATC 1 cut(s) 341
AoxI GGCC 1 cut(s) 206
ApeKI GCWGC 2 cut(s) 293, 325
AspLEI GCGC 1 cut(s) 330
AsuHPI GGTGA 1 cut(s) 188
BaeGI GKGCMC 1 cut(s) 53
BanII GRGCYC 1 cut(s) 27
BbsI GAAGAC 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 27
BbvI GCAGC 2 cut(s) 305, 337
BccI CCATC 1 cut(s) 167
BceAI ACGGC 1 cut(s) 350
BcgI CGANNNNNNTGC 2 cut(s) 419, 453
BciT130I CCWGG 1 cut(s) 205
BfaI CTAG 2 cut(s) 77, 114
BfmI CTRYAG 1 cut(s) 442
BglII AGATCT 1 cut(s) 87
BisI GCNGC 2 cut(s) 294, 326
BlsI GCNGC 2 cut(s) 295, 327
Bme1390I CCNGG 1 cut(s) 205
BmrFI CCNGG 1 cut(s) 205
BmrI ACTGGG 1 cut(s) 55
BmsI GCATC 3 cut(s) 115, 241, 454
BmuI ACTGGG 1 cut(s) 55
BpiI GAAGAC 1 cut(s) 69
BpuEI CTTGAG 1 cut(s) 373
Bsa29I ATCGAT 1 cut(s) 399
Bsc4I CCNNNNNNNGG 1 cut(s) 47
Bse1I ACTGG 2 cut(s) 50, 472
BseBI CCWGG 1 cut(s) 205
BseCI ATCGAT 1 cut(s) 399
BseGI GGATG 1 cut(s) 256
BseLI CCNNNNNNNGG 1 cut(s) 47
BseMII CTCAG 1 cut(s) 125
BseNI ACTGG 2 cut(s) 50, 472
BseSI GKGCMC 1 cut(s) 53
BseXI GCAGC 2 cut(s) 305, 337
BsgI GTGCAG 1 cut(s) 344
Bsh1285I CGRYCG 1 cut(s) 433
BshFI GGCC 1 cut(s) 208
BshVI ATCGAT 1 cut(s) 399
BsiEI CGRYCG 1 cut(s) 433
BsiHKAI GWGCWC 1 cut(s) 27
BslI CCNNNNNNNGG 1 cut(s) 47
BsnI GGCC 1 cut(s) 208
Bsp1286I GDGCHC 2 cut(s) 27, 53
Bsp143I GATC 3 cut(s) 87, 346, 430
BspACI CCGC 1 cut(s) 222
BspANI GGCC 1 cut(s) 208
BspCNI CTCAG 1 cut(s) 126
BspDI ATCGAT 1 cut(s) 399
BspPI GGATC 1 cut(s) 341
BsrI ACTGG 2 cut(s) 50, 472
BssMI GATC 3 cut(s) 87, 346, 430
Bst2UI CCWGG 1 cut(s) 205
Bst4CI ACNGT 2 cut(s) 55, 149
Bst6I CTCTTC 1 cut(s) 430
BstC8I GCNNGC 3 cut(s) 187, 240, 469
BstDEI CTNAG 1 cut(s) 134
BstF5I GGATG 1 cut(s) 256
BstHHI GCGC 1 cut(s) 330
BstKTI GATC 3 cut(s) 90, 349, 433
BstMBI GATC 3 cut(s) 87, 346, 430
BstMCI CGRYCG 1 cut(s) 433
BstMWI GCNNNNNNNGC 1 cut(s) 334
BstNI CCWGG 1 cut(s) 205
BstSCI CCNGG 1 cut(s) 203
BstSFI CTRYAG 1 cut(s) 442
BstSLI GKGCMC 1 cut(s) 53
BstV1I GCAGC 2 cut(s) 305, 337
BstV2I GAAGAC 1 cut(s) 69
BstX2I RGATCY 1 cut(s) 87
BstYI RGATCY 1 cut(s) 87
Bsu15I ATCGAT 1 cut(s) 399
BsuRI GGCC 1 cut(s) 208
BsuTUI ATCGAT 1 cut(s) 399
BtsCI GGATG 1 cut(s) 256
BtsI GCAGTG 2 cut(s) 249, 281
BtsIMutI CAGTG 3 cut(s) 154, 249, 281
Cac8I GCNNGC 3 cut(s) 187, 240, 469
CfoI GCGC 1 cut(s) 330
ClaI ATCGAT 1 cut(s) 399
Csp6I GTAC 1 cut(s) 451
CviAII CATG 2 cut(s) 101, 196
CviJI RGCY 9 cut(s) 25, 76, 120, 189, 208, 238, 270, 296, 471
CviKI_1 RGCY 9 cut(s) 25, 76, 120, 189, 208, 238, 270, 296, 471
CviQI GTAC 1 cut(s) 451
DdeI CTNAG 1 cut(s) 134
DpnI GATC 3 cut(s) 89, 348, 432
DpnII GATC 3 cut(s) 87, 346, 430
Eam1104I CTCTTC 1 cut(s) 430
EarI CTCTTC 1 cut(s) 430
Ecl136II GAGCTC 1 cut(s) 25
Eco24I GRGCYC 1 cut(s) 27
Eco53kI GAGCTC 1 cut(s) 25
EcoICRI GAGCTC 1 cut(s) 25
EcoRII CCWGG 1 cut(s) 203
EcoT38I GRGCYC 1 cut(s) 27
FaeI CATG 2 cut(s) 104, 199
FaiI YATR 8 cut(s) 68, 102, 192, 197, 273, 332, 410, 444
FatI CATG 2 cut(s) 100, 195
Fnu4HI GCNGC 2 cut(s) 294, 326
FokI GGATG 1 cut(s) 263
FriOI GRGCYC 1 cut(s) 27
Fsp4HI GCNGC 2 cut(s) 294, 326
FspBI CTAG 2 cut(s) 77, 114
GlaI GCGC 1 cut(s) 329
GluI GCNGC 2 cut(s) 294, 326
HaeIII GGCC 1 cut(s) 208
HhaI GCGC 1 cut(s) 330
Hin1II CATG 2 cut(s) 104, 199
Hin6I GCGC 1 cut(s) 328
HinP1I GCGC 1 cut(s) 328
HindIII AAGCTT 1 cut(s) 118
HinfI GANTC 3 cut(s) 104, 358, 370
HphI GGTGA 1 cut(s) 188
Hpy188I TCNGA 2 cut(s) 303, 430
HpyAV CCTTC 2 cut(s) 219, 407
HpyCH4III ACNGT 2 cut(s) 55, 149
HpyCH4IV ACGT 1 cut(s) 342
HpyCH4V TGCA 4 cut(s) 128, 185, 309, 325
HpyF10VI GCNNNNNNNGC 1 cut(s) 334
HpyF3I CTNAG 1 cut(s) 134
HpySE526I ACGT 1 cut(s) 342
Hsp92II CATG 2 cut(s) 104, 199
HspAI GCGC 1 cut(s) 328
Kzo9I GATC 3 cut(s) 87, 346, 430
LmnI GCTCC 2 cut(s) 22, 30
LpnPI CCDG 8 cut(s) 31, 148, 171, 190, 217, 230, 328, 375
Lsp1109I GCAGC 2 cut(s) 305, 337
LweI GCATC 3 cut(s) 115, 241, 454
MaeI CTAG 2 cut(s) 77, 114
MaeII ACGT 1 cut(s) 342
MaeIII GTNAC 1 cut(s) 416
MalI GATC 3 cut(s) 89, 348, 432
MboI GATC 3 cut(s) 87, 346, 430
MboII GAAGA 4 cut(s) 74, 154, 204, 417
MflI RGATCY 1 cut(s) 87
MhlI GDGCHC 2 cut(s) 27, 53
MlyI GAGTC 1 cut(s) 352
MnlI CCTC 5 cut(s) 160, 240, 271, 348, 416
MslI CAYNNNNRTG 1 cut(s) 56
MspR9I CCNGG 1 cut(s) 205
MvaI CCWGG 1 cut(s) 205
MwoI GCNNNNNNNGC 1 cut(s) 334
NdeII GATC 3 cut(s) 87, 346, 430
NlaIII CATG 2 cut(s) 104, 199
OliI CACNNNNGTG 1 cut(s) 56
PfeI GAWTC 2 cut(s) 104, 370
PkrI GCNGC 2 cut(s) 295, 327
Ple19I CGATCG 1 cut(s) 433
PleI GAGTC 1 cut(s) 352
PpsI GAGTC 1 cut(s) 352
Psp124BI GAGCTC 1 cut(s) 27
Psp6I CCWGG 1 cut(s) 203
PspGI CCWGG 1 cut(s) 203
PsuI RGATCY 1 cut(s) 87
PvuI CGATCG 1 cut(s) 433
RsaI GTAC 1 cut(s) 452
RsaNI GTAC 1 cut(s) 451
RseI CAYNNNNRTG 1 cut(s) 56
SacI GAGCTC 1 cut(s) 27
SatI GCNGC 2 cut(s) 294, 326
Sau3AI GATC 3 cut(s) 87, 346, 430
SchI GAGTC 1 cut(s) 352
ScrFI CCNGG 1 cut(s) 205
SduI GDGCHC 2 cut(s) 27, 53
SetI ASST 8 cut(s) 27, 78, 122, 171, 240, 345, 408, 418
SfaNI GCATC 3 cut(s) 115, 241, 454
SfcI CTRYAG 1 cut(s) 442
SmiMI CAYNNNNRTG 1 cut(s) 56
SmlI CTYRAG 1 cut(s) 352
SmoI CTYRAG 1 cut(s) 352
SsiI CCGC 1 cut(s) 222
SspMI CTAG 2 cut(s) 77, 114
SstI GAGCTC 1 cut(s) 27
StyD4I CCNGG 1 cut(s) 203
TaaI ACNGT 2 cut(s) 55, 149
TaiI ACGT 1 cut(s) 345
TaqI TCGA 2 cut(s) 399, 433
TatI WGTACW 1 cut(s) 450
TfiI GAWTC 2 cut(s) 104, 370
TscAI CASTG 3 cut(s) 154, 249, 288
TseI GCWGC 2 cut(s) 293, 325
TspDTI ATGAA 1 cut(s) 117
TspRI CASTG 3 cut(s) 154, 249, 288
XspI CTAG 2 cut(s) 77, 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.