AT1G04555

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011146
Physical Location & Seq
Forward (+)
1242506 .. 1244244
1739 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G04555.1

Sequence Viewer

Length: 459 bp
ATGGATCATCAATGGCGCATGAGGTTTTCGTTCAAGAACGCAACAATTGCTCTCACTGTCATCAACGTTCTCATCTTCCTCTTCCTCCTTCAGGGCTTTTTCACTTCCTCCTCTTCTCCATCTTCTTCTTCTTCTTCTCGCCGACTCATTTCAGCTCAGCTTCGGTATATCAAGGAAGCCGAAGAACTTAGGCTCAAGATGCAACCTTTAGAGCTCATCAGAAGAGTCCGAGAAATCGAACAAGAGGCATCTGCGGGACAAGAAACCGAGCAGCAGAAAGATGTGAAGCAGACTACAGCCGTTGATCTCTCTAAACGACTGAAGGATTTCCGTGCGCTAAACGATGCATCGAGCTTGAAAGCATTGGAAGAATGGCGAAAGCGGAAAATGGAACGAGCAAGACAACGGGATCTTGAGAAAACCGGAGGAGTTTCTTCGTCCACCAAAACATCATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

17.53

Weight (kDa)

10.17

Isoelectric Point (pI)

64.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 254, 382
AclI AACGTT 1 cut(s) 66
AclWI GGATC 2 cut(s) 12, 417
AcuI CTGAAG 2 cut(s) 74, 341
AfiI CCNNNNNNNGG 1 cut(s) 91
AgsI TTSAA 2 cut(s) 34, 358
AluBI AGCT 4 cut(s) 155, 160, 214, 354
AluI AGCT 4 cut(s) 155, 160, 214, 354
Alw21I GWGCWC 1 cut(s) 216
AlwI GGATC 2 cut(s) 12, 417
ApeKI GCWGC 1 cut(s) 271
Asp700I GAANNNNTTC 1 cut(s) 326
AspLEI GCGC 2 cut(s) 18, 337
BanII GRGCYC 1 cut(s) 216
Bbv12I GWGCWC 1 cut(s) 216
BbvI GCAGC 1 cut(s) 283
BccI CCATC 1 cut(s) 127
BceAI ACGGC 1 cut(s) 284
BfmI CTRYAG 1 cut(s) 294
BisI GCNGC 1 cut(s) 272
BlpI GCTNAGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 273
BmsI GCATC 4 cut(s) 189, 257, 334, 356
Bpu1102I GCTNAGC 1 cut(s) 156
BpuEI CTTGAG 2 cut(s) 179, 434
BsaWI WCCGGW 1 cut(s) 422
Bsc4I CCNNNNNNNGG 1 cut(s) 91
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMII CTCAG 1 cut(s) 170
BseRI GAGGAG 2 cut(s) 100, 441
BseXI GCAGC 1 cut(s) 283
BsiHKAI GWGCWC 1 cut(s) 216
BsiSI CCGG 1 cut(s) 423
BslFI GGGAC 1 cut(s) 270
BslI CCNNNNNNNGG 1 cut(s) 91
BsmFI GGGAC 1 cut(s) 270
Bsp1286I GDGCHC 1 cut(s) 216
Bsp143I GATC 3 cut(s) 4, 304, 409
Bsp1720I GCTNAGC 1 cut(s) 156
BspACI CCGC 2 cut(s) 254, 382
BspCNI CTCAG 1 cut(s) 169
BspPI GGATC 2 cut(s) 12, 417
BssMI GATC 3 cut(s) 4, 304, 409
Bst4CI ACNGT 1 cut(s) 58
Bst6I CTCTTC 3 cut(s) 86, 118, 217
BstAPI GCANNNNNTGC 1 cut(s) 47
BstDEI CTNAG 2 cut(s) 156, 188
BstENI CCTNNNNNAGG 1 cut(s) 89
BstHHI GCGC 2 cut(s) 18, 337
BstKTI GATC 3 cut(s) 7, 307, 412
BstMBI GATC 3 cut(s) 4, 304, 409
BstMWI GCNNNNNNNGC 2 cut(s) 47, 199
BstSFI CTRYAG 1 cut(s) 294
BstV1I GCAGC 1 cut(s) 283
BstX2I RGATCY 1 cut(s) 409
BstYI RGATCY 1 cut(s) 409
BtsIMutI CAGTG 1 cut(s) 54
CfoI GCGC 2 cut(s) 18, 337
CviAII CATG 1 cut(s) 19
CviJI RGCY 8 cut(s) 96, 155, 160, 179, 193, 214, 299, 354
CviKI_1 RGCY 8 cut(s) 96, 155, 160, 179, 193, 214, 299, 354
DdeI CTNAG 2 cut(s) 156, 188
DpnI GATC 3 cut(s) 6, 306, 411
DpnII GATC 3 cut(s) 4, 304, 409
Eam1104I CTCTTC 3 cut(s) 86, 118, 217
EarI CTCTTC 3 cut(s) 86, 118, 217
Ecl136II GAGCTC 1 cut(s) 214
Eco24I GRGCYC 1 cut(s) 216
Eco53kI GAGCTC 1 cut(s) 214
Eco57I CTGAAG 2 cut(s) 74, 341
EcoICRI GAGCTC 1 cut(s) 214
EcoNI CCTNNNNNAGG 1 cut(s) 89
EcoT22I ATGCAT 1 cut(s) 349
EcoT38I GRGCYC 1 cut(s) 216
FaeI CATG 1 cut(s) 22
FaiI YATR 3 cut(s) 20, 168, 457
FaqI GGGAC 1 cut(s) 270
FatI CATG 1 cut(s) 18
FauI CCCGC 1 cut(s) 247
Fnu4HI GCNGC 1 cut(s) 272
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 1 cut(s) 272
GlaI GCGC 2 cut(s) 17, 336
GluI GCNGC 1 cut(s) 272
HapII CCGG 1 cut(s) 423
HhaI GCGC 2 cut(s) 18, 337
Hin1II CATG 1 cut(s) 22
Hin6I GCGC 2 cut(s) 16, 335
HinP1I GCGC 2 cut(s) 16, 335
HinfI GANTC 2 cut(s) 144, 225
HpaII CCGG 1 cut(s) 423
Hpy166II GTNNAC 1 cut(s) 441
Hpy188I TCNGA 2 cut(s) 221, 230
Hpy188III TCNNGA 3 cut(s) 34, 196, 413
Hpy8I GTNNAC 1 cut(s) 441
HpyAV CCTTC 2 cut(s) 98, 316
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4IV ACGT 1 cut(s) 66
HpyCH4V TGCA 2 cut(s) 202, 347
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 199
HpyF3I CTNAG 2 cut(s) 156, 188
HpySE526I ACGT 1 cut(s) 66
Hsp92II CATG 1 cut(s) 22
HspAI GCGC 2 cut(s) 16, 335
Kzo9I GATC 3 cut(s) 4, 304, 409
LpnPI CCDG 2 cut(s) 77, 436
Lsp1109I GCAGC 1 cut(s) 283
LweI GCATC 4 cut(s) 189, 257, 334, 356
MaeII ACGT 1 cut(s) 66
MalI GATC 3 cut(s) 6, 306, 411
MboI GATC 3 cut(s) 4, 304, 409
MfeI CAATTG 1 cut(s) 45
MflI RGATCY 1 cut(s) 409
MhlI GDGCHC 1 cut(s) 216
MluCI AATT 1 cut(s) 45
MlyI GAGTC 2 cut(s) 138, 234
MnlI CCTC 7 cut(s) 15, 89, 95, 118, 121, 238, 419
Mph1103I ATGCAT 1 cut(s) 349
MroXI GAANNNNTTC 1 cut(s) 326
MspI CCGG 1 cut(s) 423
MunI CAATTG 1 cut(s) 45
MwoI GCNNNNNNNGC 2 cut(s) 47, 199
NdeII GATC 3 cut(s) 4, 304, 409
NlaIII CATG 1 cut(s) 22
NsiI ATGCAT 1 cut(s) 349
PdmI GAANNNNTTC 1 cut(s) 326
PkrI GCNGC 1 cut(s) 273
PleI GAGTC 2 cut(s) 138, 233
PpsI GAGTC 2 cut(s) 138, 233
Psp124BI GAGCTC 1 cut(s) 216
Psp1406I AACGTT 1 cut(s) 66
PsuI RGATCY 1 cut(s) 409
SacI GAGCTC 1 cut(s) 216
SatI GCNGC 1 cut(s) 272
Sau3AI GATC 3 cut(s) 4, 304, 409
SchI GAGTC 2 cut(s) 138, 234
SduI GDGCHC 1 cut(s) 216
SetI ASST 7 cut(s) 26, 69, 157, 162, 208, 216, 356
SfaNI GCATC 4 cut(s) 189, 257, 334, 356
SfcI CTRYAG 1 cut(s) 294
SmlI CTYRAG 2 cut(s) 194, 413
SmoI CTYRAG 2 cut(s) 194, 413
Sse9I AATT 1 cut(s) 45
SsiI CCGC 2 cut(s) 254, 382
SstI GAGCTC 1 cut(s) 216
TaaI ACNGT 1 cut(s) 58
TaiI ACGT 1 cut(s) 69
TaqI TCGA 2 cut(s) 237, 350
TasI AATT 1 cut(s) 45
TscAI CASTG 1 cut(s) 61
TseI GCWGC 1 cut(s) 271
TspGWI ACGGA 1 cut(s) 320
TspRI CASTG 1 cut(s) 61
XagI CCTNNNNNAGG 1 cut(s) 89
XmnI GAANNNNTTC 1 cut(s) 326
Zsp2I ATGCAT 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.