Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0011146

Physical Location & Seq

Genomic Coordinates Forward (+)

8988876 .. 8992208

Gene Structure 3333 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG059000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGAGGGACAGCAGCCATGGAGGCCCAGATTGTCGTTCCGGAGCGCCACCATAATGATGTGCTTGCTGAACGTGATCACAGCTCTTCTGTTGCTCCAGGGCTTTCTCTTCTCTACTTCTTCTCGCTCCAAATCCTCACCCAGTTCAGCCACACTCAGGTATATCAGAGAATCTGAAGAGATCCGTCTTGCTATGCGACCCTTGGAACTAATAAAAAGAGTGAGGGAAATCCAACGAGAAGCATCTGGAGAACCAGAAACACTCCAAGAGAAAGACACAAGGCAGACAGTTGCAGTTGACCTTTCAAAAAGATTGAAGGATCTGCATGCTACTAATGATGCTAACAGTTTGAAAGGTGAATACATGTCTCTCTACCCTACATATTTGCTTTTATTTGTCAAACAGCTGTTATTCCTTTTCAGGGTCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

16.53

Weight (kDa)

9.77

Isoelectric Point (pI)

55.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04555
fragaria_vesca	FvH4_4g05040 FvH4_4g05040
malus_domestica	MD13G1223900.v1.1 MD16G1228700.v1.1
prunus_persica	Prupe.1G050700_v2.0.a1
pyrus_communis	pycom13g19780 pycom16g19140
rosa_chinensis	RchiOBHm_Chr4g0395941
rosa_laevigata	RLG00000009587
rosa_multiflora	Rmu_sc0001103.1_g000010
rosa_roxburghii	Rroxscaffold_5G00340690
rosa_rugosa	Rorug03G0353300 Rorug03G0353400
rosa_samantha	Rh4AG063000 Rh4AG064000 Rh4AG066600 Rh4BG062800 Rh4CG069100 Rh4DG059000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	39
AclWI	GGATC	2 cut(s)	175, 327
AcuI	CTGAAG	1 cut(s)	195
AfiI	CCNNNNNNNGG	2 cut(s)	156, 421
AflIII	ACRYGT	1 cut(s)	363
AgsI	TTSAA	3 cut(s)	306, 316, 352
AjnI	CCWGG	1 cut(s)	96
AluBI	AGCT	2 cut(s)	83, 406
AluI	AGCT	2 cut(s)	83, 406
Alw26I	GTCTC	1 cut(s)	372
AlwI	GGATC	2 cut(s)	175, 327
Aor13HI	TCCGGA	1 cut(s)	39
AoxI	GGCC	1 cut(s)	23
ApeKI	GCWGC	1 cut(s)	13
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	1 cut(s)	24
AsuHPI	GGTGA	2 cut(s)	129, 368
BbvI	GCAGC	1 cut(s)	25
BciT130I	CCWGG	1 cut(s)	98
BclI	TGATCA	1 cut(s)	75
BcoDI	GTCTC	1 cut(s)	372
BfoI	RGCGCY	1 cut(s)	48
BglI	GCCNNNNNGGC	1 cut(s)	22
BisI	GCNGC	1 cut(s)	14
BlsI	GCNGC	1 cut(s)	15
Bme1390I	CCNGG	1 cut(s)	98
BmgT120I	GGNCC	1 cut(s)	24
BmrFI	CCNGG	1 cut(s)	98
BmrI	ACTGGG	1 cut(s)	135
BmsI	GCATC	2 cut(s)	251, 328
BmuI	ACTGGG	1 cut(s)	135
BpmI	CTGGAG	2 cut(s)	80, 267
BsaJI	CCNNGG	3 cut(s)	17, 97, 201
BsaWI	WCCGGW	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	2 cut(s)	156, 421
Bse1I	ACTGG	1 cut(s)	141
BseAI	TCCGGA	1 cut(s)	39
BseBI	CCWGG	1 cut(s)	98
BseDI	CCNNGG	3 cut(s)	17, 97, 201
BseLI	CCNNNNNNNGG	2 cut(s)	156, 421
BseMII	CTCAG	1 cut(s)	169
BseNI	ACTGG	1 cut(s)	141
BseXI	GCAGC	1 cut(s)	25
BshFI	GGCC	1 cut(s)	25
BsiSI	CCGG	1 cut(s)	40
BslFI	GGGAC	1 cut(s)	21
BslI	CCNNNNNNNGG	2 cut(s)	156, 421
BsmAI	GTCTC	1 cut(s)	372
BsmFI	GGGAC	1 cut(s)	21
BsnI	GGCC	1 cut(s)	25
Bsp13I	TCCGGA	1 cut(s)	39
Bsp143I	GATC	3 cut(s)	75, 180, 319
Bsp19I	CCATGG	1 cut(s)	17
BspANI	GGCC	1 cut(s)	25
BspCNI	CTCAG	1 cut(s)	168
BspEI	TCCGGA	1 cut(s)	39
BspPI	GGATC	2 cut(s)	175, 327
BspQI	GCTCTTC	1 cut(s)	90
BsrI	ACTGG	1 cut(s)	141
BssECI	CCNNGG	3 cut(s)	17, 97, 201
BssMI	GATC	3 cut(s)	75, 180, 319
BssT1I	CCWWGG	2 cut(s)	17, 201
Bst2UI	CCWGG	1 cut(s)	98
Bst4CI	ACNGT	2 cut(s)	289, 347
Bst6I	CTCTTC	3 cut(s)	90, 113, 171
BstC8I	GCNNGC	2 cut(s)	65, 327
BstDEI	CTNAG	1 cut(s)	155
BstDSI	CCRYGG	1 cut(s)	17
BstH2I	RGCGCY	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	3 cut(s)	78, 183, 322
BstMAI	GTCTC	1 cut(s)	372
BstMBI	GATC	3 cut(s)	75, 180, 319
BstMWI	GCNNNNNNNGC	1 cut(s)	22
BstNI	CCWGG	1 cut(s)	98
BstNSI	RCATGY	2 cut(s)	329, 367
BstSCI	CCNGG	1 cut(s)	96
BstV1I	GCAGC	1 cut(s)	25
BstX2I	RGATCY	2 cut(s)	180, 319
BstYI	RGATCY	2 cut(s)	180, 319
BsuRI	GGCC	1 cut(s)	25
BtgI	CCRYGG	1 cut(s)	17
Cac8I	GCNNGC	2 cut(s)	65, 327
CfoI	GCGC	1 cut(s)	47
Cfr13I	GGNCC	1 cut(s)	24
CviAII	CATG	3 cut(s)	18, 326, 364
CviJI	RGCY	6 cut(s)	16, 25, 83, 102, 149, 406
CviKI_1	RGCY	6 cut(s)	16, 25, 83, 102, 149, 406
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	3 cut(s)	77, 182, 321
DpnII	GATC	3 cut(s)	75, 180, 319
Eam1104I	CTCTTC	3 cut(s)	90, 113, 171
EarI	CTCTTC	3 cut(s)	90, 113, 171
Eco130I	CCWWGG	2 cut(s)	17, 201
Eco57I	CTGAAG	1 cut(s)	195
EcoRII	CCWGG	1 cut(s)	96
EcoT14I	CCWWGG	2 cut(s)	17, 201
ErhI	CCWWGG	2 cut(s)	17, 201
FaeI	CATG	3 cut(s)	21, 329, 367
FaiI	YATR	7 cut(s)	19, 53, 162, 194, 327, 365, 382
FaqI	GGGAC	1 cut(s)	21
FatI	CATG	3 cut(s)	17, 325, 363
FbaI	TGATCA	1 cut(s)	75
Fnu4HI	GCNGC	1 cut(s)	14
Fsp4HI	GCNGC	1 cut(s)	14
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	1 cut(s)	14
GsuI	CTGGAG	2 cut(s)	80, 267
HaeII	RGCGCY	1 cut(s)	48
HaeIII	GGCC	1 cut(s)	25
HapII	CCGG	1 cut(s)	40
HhaI	GCGC	1 cut(s)	47
Hin1II	CATG	3 cut(s)	21, 329, 367
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HinfI	GANTC	1 cut(s)	170
HpaII	CCGG	1 cut(s)	40
HphI	GGTGA	2 cut(s)	129, 368
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	2 cut(s)	167, 175
Hpy188III	TCNNGA	2 cut(s)	40, 246
Hpy8I	GTNNAC	1 cut(s)	298
HpyAV	CCTTC	1 cut(s)	310
HpyCH4III	ACNGT	2 cut(s)	289, 347
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	2 cut(s)	293, 325
HpyF10VI	GCNNNNNNNGC	1 cut(s)	22
HpyF3I	CTNAG	1 cut(s)	155
HpySE526I	ACGT	1 cut(s)	72
Hsp92II	CATG	3 cut(s)	21, 329, 367
HspAI	GCGC	1 cut(s)	45
Kpn2I	TCCGGA	1 cut(s)	39
Ksp22I	TGATCA	1 cut(s)	75
Kzo9I	GATC	3 cut(s)	75, 180, 319
LguI	GCTCTTC	1 cut(s)	90
LmnI	GCTCC	3 cut(s)	42, 99, 131
LpnPI	CCDG	9 cut(s)	40, 53, 83, 110, 142, 154, 231, 267, 406
Lsp1109I	GCAGC	1 cut(s)	25
LweI	GCATC	2 cut(s)	251, 328
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	1 cut(s)	424
MalI	GATC	3 cut(s)	77, 182, 321
MboI	GATC	3 cut(s)	75, 180, 319
MboII	GAAGA	4 cut(s)	77, 100, 111, 188
MflI	RGATCY	2 cut(s)	180, 319
MmeI	TCCRAC	1 cut(s)	256
MnlI	CCTC	3 cut(s)	15, 145, 216
MroI	TCCGGA	1 cut(s)	39
MseI	TTAA	1 cut(s)	430
MslI	CAYNNNNRTG	2 cut(s)	53, 56
MspA1I	CMGCKG	1 cut(s)	406
MspI	CCGG	1 cut(s)	40
MspR9I	CCNGG	1 cut(s)	98
MvaI	CCWGG	1 cut(s)	98
MwoI	GCNNNNNNNGC	1 cut(s)	22
NcoI	CCATGG	1 cut(s)	17
NdeII	GATC	3 cut(s)	75, 180, 319
NlaIII	CATG	3 cut(s)	21, 329, 367
NmuCI	GTSAC	1 cut(s)	424
NspI	RCATGY	2 cut(s)	329, 367
PaeI	GCATGC	1 cut(s)	329
PciI	ACATGT	1 cut(s)	363
PciSI	GCTCTTC	1 cut(s)	90
PfeI	GAWTC	1 cut(s)	170
PkrI	GCNGC	1 cut(s)	15
PscI	ACATGT	1 cut(s)	363
Psp6I	CCWGG	1 cut(s)	96
PspGI	CCWGG	1 cut(s)	96
PspPI	GGNCC	1 cut(s)	24
PsuI	RGATCY	2 cut(s)	180, 319
PvuII	CAGCTG	1 cut(s)	406
RseI	CAYNNNNRTG	2 cut(s)	53, 56
SapI	GCTCTTC	1 cut(s)	90
SaqAI	TTAA	1 cut(s)	430
SatI	GCNGC	1 cut(s)	14
Sau3AI	GATC	3 cut(s)	75, 180, 319
Sau96I	GGNCC	1 cut(s)	24
ScrFI	CCNGG	1 cut(s)	98
SetI	ASST	6 cut(s)	75, 85, 161, 303, 358, 408
SfaNI	GCATC	2 cut(s)	251, 328
SmiMI	CAYNNNNRTG	2 cut(s)	53, 56
SphI	GCATGC	1 cut(s)	329
StyD4I	CCNGG	1 cut(s)	96
StyI	CCWWGG	2 cut(s)	17, 201
TaaI	ACNGT	2 cut(s)	289, 347
TaiI	ACGT	1 cut(s)	75
TfiI	GAWTC	1 cut(s)	170
Tru1I	TTAA	1 cut(s)	430
Tru9I	TTAA	1 cut(s)	430
TseFI	GTSAC	1 cut(s)	424
TseI	GCWGC	1 cut(s)	13
Tsp45I	GTSAC	1 cut(s)	424
TspGWI	ACGGA	1 cut(s)	173
XceI	RCATGY	2 cut(s)	329, 367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.