Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0009622

Physical Location & Seq

Genomic Coordinates Reverse (-)

43362416 .. 43363334

Gene Structure 919 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0353300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGCCTCCAAGAGCATCTTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACTTCCTTCAGCACAGGTTCTGTGGCTAAGGACATGTTTCATTGGCAAGCAACGATTATGGGATCCCCTGATAGCCCATATGCTGGAGATGTATTCCTTGTCACCATTCATTTCCCTCCTGACTATCCTTTCAAACCACCTAAGGTTGCATTTAGGACTAAGGTCTTCCGTCTTCCACCCATATACCAACAGCAATGGAAGCATTTGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000775 GO:0000785 GO:0000790 GO:0000792 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005720 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008276 GO:0009292 GO:0009294 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0019222 GO:0019538 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0034641 GO:0036211 GO:0040029 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044728 GO:0044764 GO:0046483 GO:0048519 GO:0050789 GO:0051276 GO:0051704 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080188 GO:0090304 GO:0098687 GO:0140096 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

88

Amino Acids

10.07

Weight (kDa)

9.52

Isoelectric Point (pI)

42.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	6 - 75	6.6e-21	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009622)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13460 AT4G13460
fragaria_vesca	FvH4_2g20121
malus_domestica	MD13G1224000.v1.1 MD16G1228800.v1.1
prunus_persica	Prupe.1G050800_v2.0.a1 Prupe.1G050800_v2.0.a1 Prupe.1G050800_v2.0.a1 Prupe.1G050800_v2.0.a1
pyrus_communis	pycom13g19790
rosa_chinensis	RchiOBHm_Chr4g0395951
rosa_laevigata	RLG00000009586
rosa_multiflora	Rmu_sc0001103.1_g000009
rosa_roxburghii	Rroxscaffold_5G00340700
rosa_rugosa	Rorug03G0353200 Rorug03G0353300
rosa_samantha	Rh4AG063100 Rh4AG064100 Rh4BG062900 Rh4CG069200 Rh4DG059100
rosa_wichuraiana	Rw4G005180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	137
AclWI	GGATC	4 cut(s)	41, 54, 111, 124
AcuI	CTGAAG	1 cut(s)	46
AfiI	CCNNNNNNNGG	1 cut(s)	137
AflII	CTTAAG	1 cut(s)	29
AflIII	ACRYGT	1 cut(s)	87
AgsI	TTSAA	2 cut(s)	22, 187
AluBI	AGCT	1 cut(s)	28
AluI	AGCT	1 cut(s)	28
AlwI	GGATC	4 cut(s)	41, 54, 111, 124
AlwNI	CAGNNNCTG	1 cut(s)	74
AoxI	GGCC	1 cut(s)	3
AsuHPI	GGTGA	1 cut(s)	148
AxyI	CCTNAGG	1 cut(s)	195
BamHI	GGATCC	2 cut(s)	46, 116
BbsI	GAAGAC	2 cut(s)	211, 218
BfrI	CTTAAG	1 cut(s)	29
BmiI	GGNNCC	2 cut(s)	48, 118
BmsI	GCATC	1 cut(s)	24
BoxI	GACNNNNGTC	1 cut(s)	215
BpiI	GAAGAC	2 cut(s)	211, 218
BpmI	CTGGAG	1 cut(s)	159
Bpu10I	CCTNAGC	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
Bse21I	CCTNAGG	1 cut(s)	195
Bse3DI	GCAATG	1 cut(s)	254
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseMI	GCAATG	1 cut(s)	254
BshFI	GGCC	1 cut(s)	5
BslI	CCNNNNNNNGG	1 cut(s)	137
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	2 cut(s)	46, 116
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	2 cut(s)	48, 118
BspPI	GGATC	4 cut(s)	41, 54, 111, 124
BspTI	CTTAAG	1 cut(s)	29
BsrDI	GCAATG	1 cut(s)	254
BssMI	GATC	2 cut(s)	46, 116
BstAFI	CTTAAG	1 cut(s)	29
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	3 cut(s)	81, 195, 213
BstKTI	GATC	2 cut(s)	49, 119
BstMBI	GATC	2 cut(s)	46, 116
BstMWI	GCNNNNNNNGC	1 cut(s)	253
BstNSI	RCATGY	1 cut(s)	91
BstPAI	GACNNNNGTC	1 cut(s)	215
BstV2I	GAAGAC	2 cut(s)	211, 218
BstX2I	RGATCY	2 cut(s)	46, 116
BstYI	RGATCY	2 cut(s)	46, 116
Bsu36I	CCTNAGG	1 cut(s)	195
BsuRI	GGCC	1 cut(s)	5
Cac8I	GCNNGC	1 cut(s)	102
CaiI	CAGNNNCTG	1 cut(s)	74
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	4 cut(s)	5, 28, 80, 129
CviKI_1	RGCY	4 cut(s)	5, 28, 80, 129
DdeI	CTNAG	3 cut(s)	81, 195, 213
DpnI	GATC	2 cut(s)	48, 118
DpnII	GATC	2 cut(s)	46, 116
Eco57I	CTGAAG	1 cut(s)	46
Eco81I	CCTNAGG	1 cut(s)	195
FaeI	CATG	1 cut(s)	91
FaiI	YATR	6 cut(s)	89, 113, 133, 135, 236, 238
FalI	AAGNNNNNCTT	1 cut(s)	34
FatI	CATG	1 cut(s)	87
FauNDI	CATATG	1 cut(s)	133
GsuI	CTGGAG	1 cut(s)	159
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	91
HphI	GGTGA	1 cut(s)	148
Hpy188III	TCNNGA	3 cut(s)	19, 173, 264
HpyAV	CCTTC	3 cut(s)	16, 37, 70
HpyCH4V	TGCA	2 cut(s)	40, 203
HpyF10VI	GCNNNNNNNGC	1 cut(s)	253
HpyF3I	CTNAG	3 cut(s)	81, 195, 213
Hsp92II	CATG	1 cut(s)	91
Kzo9I	GATC	2 cut(s)	46, 116
LmnI	GCTCC	1 cut(s)	25
LpnPI	CCDG	4 cut(s)	54, 123, 135, 186
LweI	GCATC	1 cut(s)	24
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	2 cut(s)	48, 118
MboI	GATC	2 cut(s)	46, 116
MboII	GAAGA	2 cut(s)	211, 218
MflI	RGATCY	2 cut(s)	46, 116
MnlI	CCTC	3 cut(s)	16, 60, 180
MseI	TTAA	1 cut(s)	30
MspCI	CTTAAG	1 cut(s)	29
MwoI	GCNNNNNNNGC	1 cut(s)	253
NdeI	CATATG	1 cut(s)	133
NdeII	GATC	2 cut(s)	46, 116
NlaIII	CATG	1 cut(s)	91
NlaIV	GGNNCC	2 cut(s)	48, 118
NmuCI	GTSAC	1 cut(s)	154
NspI	RCATGY	1 cut(s)	91
PciI	ACATGT	1 cut(s)	87
PflMI	CCANNNNNTGG	1 cut(s)	137
PscI	ACATGT	1 cut(s)	87
PshAI	GACNNNNGTC	1 cut(s)	215
PspN4I	GGNNCC	2 cut(s)	48, 118
PstNI	CAGNNNCTG	1 cut(s)	74
PsuI	RGATCY	2 cut(s)	46, 116
SaqAI	TTAA	1 cut(s)	30
Sau3AI	GATC	2 cut(s)	46, 116
SetI	ASST	5 cut(s)	30, 73, 196, 201, 219
SfaNI	GCATC	1 cut(s)	24
SgeI	CNNG	9 cut(s)	22, 31, 81, 100, 113, 134, 150, 164, 185
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TseFI	GTSAC	1 cut(s)	154
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	2 cut(s)	83, 152
TspGWI	ACGGA	1 cut(s)	212
Van91I	CCANNNNNTGG	1 cut(s)	137
Vha464I	CTTAAG	1 cut(s)	29
XceI	RCATGY	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.