Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001103.1

Orthogroup ID

OG0009622

Physical Location & Seq

Genomic Coordinates Forward (+)

50771 .. 52792

Gene Structure 2022 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001103.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2022 bp

atgggctctctcctcccaattcttgacctcaatgcctcccctcaatccgtccccaattcaaccctagccaccgccaccatatccctcaaggtccccaaaatcgagcccaagcccgaaccttgcgacgacccagctccccaactccccttcgatcccagccccagctccgacattttccccaatccccaaactgcccctctccctctcccccaccagacctcgatcgtcgccgccgcgccggaccacgtctactccgagttccaccgcatttccgagctcttccacaccgccttcgcgaaagggattcagaactgcgacggcggcggcggcggcggccgtggagacgaggacggcgtcgttctggacccggagtccggcgcgattgttcccgtggaggacaacaaccagcagcagcagctggcggaggtcgtgcagcggaagaagtacccgcagcggtcgaacgagctggtccgggtcaccgatctcagcgacgaggaccaccgctacttccgtgaggtcgtcaggaagacccggatgctctacgattcgattcggatcctctcggtggcggaggaggacaagaagaatccgggtcaggggaaacggacccggggcgacctgcgggccgcctccgtgctccgggaccgtgggctctggctcaaccgtgataagcggattgtggggtccattccgggagtctatgttggtgacctcttcttctttcgcatggagctatgtgtggttgggatacacggacaagtccaagctggaattgactatcttccggggagccagagctcgaatagggagccgattgcgacgagcattatcgtctctggcgggtacgaggatgatgaggatgctggggatattattatctacacaggacatggagggcaggacaaatttaataggcaatgtgcacaccagaagctggagggtgggaacttggcgttggagaggagtatgcattacgggattgaagtgagggttattagggggaggaagattcatggagctgtttcgagtaaggtgtatgtttatgatggtttgtataggattcttgaaacttggcttgatgttgggaagtcggggtttggtgtttataagtttaagcttttgagaatcgaggggcagcctgagatggggagctccattcttaagtttgctgagagtcttaggagtaggccgttgagtgtgaggccgaggggttatcttagtttggatctttcgcagcagagggagaagattccggtgttgcttttcaatgacattgatgctgatcaggaccccttgtattatgagtatcttaggacacctgcatttccaactcatgtgtatcatcagtcggcaaatggaactggctgtgaatgtgttaacggttgtaatgaaaattgcttttgtgctatgaaaaatggaggggagtttccttatgatcagaatgggtttcttctgagggggaagcctgtggtatttgagtgtgggaccttctgccgttgccccccgcagtgtcgaaatcgtgtcacccaacatggattgagaaatagactggaagtgtttagatcaagggaaacaggttggggggttaggtctttggacttgatacatgccggcgcttttatatgtgagtatacaggagttattctcacgagggagcaggctcaaattttttccatggatggtgatagcttgatctatccccatcggttttctgataaatgggcagaatggggagatttatctcagatctatcctgattatgcacgtccaacttatccggcaatcccaccgctggattttgcaatggatgtgtcaaaaatgaggaatgttgcttgttatatgagccagagtaccactccaaatgtgatggtgcagttcgttctatttgatcacaacaacttgatgtttcctcatcttatgctatttgcaatggagaacattcctcctctgagggagttaagccttgactatggggtggcggtggctgatgaatggacagggaaacttgctatctgtaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000775 GO:0000785 GO:0000790 GO:0000792 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005720 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008276 GO:0009292 GO:0009294 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0019222 GO:0019538 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0034641 GO:0036211 GO:0040029 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044728 GO:0044764 GO:0046483 GO:0048519 GO:0050789 GO:0051276 GO:0051704 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080188 GO:0090304 GO:0098687 GO:0140096 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

673

Amino Acids

75.28

Weight (kDa)

5.84

Isoelectric Point (pI)

44.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009622)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13460 AT4G13460
fragaria_vesca	FvH4_2g20121
malus_domestica	MD13G1224000.v1.1 MD16G1228800.v1.1
prunus_persica	Prupe.1G050800_v2.0.a1 Prupe.1G050800_v2.0.a1 Prupe.1G050800_v2.0.a1 Prupe.1G050800_v2.0.a1
pyrus_communis	pycom13g19790
rosa_chinensis	RchiOBHm_Chr4g0395951
rosa_laevigata	RLG00000009586
rosa_multiflora	Rmu_sc0001103.1_g000009
rosa_roxburghii	Rroxscaffold_5G00340700
rosa_rugosa	Rorug03G0353200 Rorug03G0353300
rosa_samantha	Rh4AG063100 Rh4AG064100 Rh4BG062900 Rh4CG069200 Rh4DG059100
rosa_wichuraiana	Rw4G005180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1107
AarI	CACCTGC	1 cut(s)	1327
Acc36I	ACCTGC	2 cut(s)	627, 1327
AccB7I	CCANNNNNTGG	1 cut(s)	934
AccI	GTMKAC	2 cut(s)	249, 1631
AccII	CGCG	3 cut(s)	236, 296, 380
AclWI	GGATC	4 cut(s)	146, 550, 563, 1233
AcoI	YGGCCR	1 cut(s)	334
AcsI	RAATTY	2 cut(s)	905, 1665
AcyI	GRCGYC	1 cut(s)	354
AfaI	GTAC	3 cut(s)	446, 845, 1852
AfiI	CCNNNNNNNGG	7 cut(s)	374, 565, 596, 639, 934, 1145, 1792
AflII	CTTAAG	1 cut(s)	1160
AgsI	TTSAA	4 cut(s)	60, 983, 1067, 1267
AhdI	GACNNNNNGTC	1 cut(s)	370
AjiI	CACGTC	2 cut(s)	247, 1766
AjuI	GAANNNNNNNTTGG	2 cut(s)	938, 970
Alw21I	GWGCWC	5 cut(s)	279, 639, 800, 925, 1154
Alw26I	GTCTC	2 cut(s)	336, 838
Alw44I	GTGCAC	1 cut(s)	921
AlwI	GGATC	4 cut(s)	146, 550, 563, 1233
AlwNI	CAGNNNCTG	2 cut(s)	418, 934
Ama87I	CYCGRG	1 cut(s)	609
AoxI	GGCC	4 cut(s)	334, 624, 1187, 1202
ApaLI	GTGCAC	1 cut(s)	921
ApeKI	GCWGC	7 cut(s)	409, 412, 415, 433, 451, 1135, 1234
ApoI	RAATTY	2 cut(s)	905, 1665
AspLEI	GCGC	3 cut(s)	238, 380, 1616
AsuC2I	CCSGG	9 cut(s)	368, 473, 532, 591, 610, 611, 641, 693, 786
AsuHPI	GGTGA	4 cut(s)	469, 719, 1516, 1694
AvaI	CYCGRG	1 cut(s)	609
BaeGI	GKGCMC	1 cut(s)	925
BamHI	GGATCC	1 cut(s)	555
BanII	GRGCYC	6 cut(s)	8, 108, 279, 654, 800, 1154
BauI	CACGAG	1 cut(s)	1648
BbsI	GAAGAC	1 cut(s)	533
Bbv12I	GWGCWC	5 cut(s)	279, 639, 800, 925, 1154
BbvI	GCAGC	7 cut(s)	421, 424, 427, 445, 463, 1147, 1246
BccI	CCATC	5 cut(s)	1040, 1138, 1673, 1710, 1861
BceAI	ACGGC	5 cut(s)	321, 334, 367, 1174, 1479
BciVI	GTATCC	1 cut(s)	741
BclI	TGATCA	3 cut(s)	1282, 1435, 1888
BcnI	CCSGG	9 cut(s)	368, 473, 532, 591, 610, 611, 641, 693, 786
BcoDI	GTCTC	2 cut(s)	336, 838
BfaI	CTAG	1 cut(s)	65
BfoI	RGCGCY	1 cut(s)	1617
BfrI	CTTAAG	1 cut(s)	1160
BfuAI	ACCTGC	2 cut(s)	627, 1327
BfuI	GTATCC	1 cut(s)	741
BglII	AGATCT	1 cut(s)	1746
Bme1390I	CCNGG	9 cut(s)	368, 473, 532, 591, 610, 611, 641, 693, 786
BmeRI	GACNNNNNGTC	1 cut(s)	370
BmeT110I	CYCGRG	1 cut(s)	609
BmgBI	CACGTC	2 cut(s)	247, 1766
BmrFI	CCNGG	9 cut(s)	368, 473, 532, 591, 610, 611, 641, 693, 786
BmsI	GCATC	3 cut(s)	525, 850, 1267
BpiI	GAAGAC	1 cut(s)	533
BplI	GAGNNNNNCTC	4 cut(s)	1629, 1661, 1840, 1872
BpmI	CTGGAG	1 cut(s)	956
BpuEI	CTTGAG	1 cut(s)	71
BpuMI	CCSGG	9 cut(s)	368, 473, 532, 591, 610, 611, 641, 693, 786
BsaBI	GATNNNNATC	2 cut(s)	554, 1281
BsaHI	GRCGYC	1 cut(s)	354
BsaJI	CCNNGG	8 cut(s)	337, 390, 609, 610, 646, 785, 1205, 1674
BsaWI	WCCGGW	1 cut(s)	1252
BsaXI	ACNNNNNCTCC	4 cut(s)	236, 266, 687, 717
Bsc4I	CCNNNNNNNGG	7 cut(s)	374, 565, 596, 639, 934, 1145, 1792
Bse118I	RCCGGY	1 cut(s)	1610
Bse1I	ACTGG	2 cut(s)	1366, 1554
Bse3DI	GCAATG	3 cut(s)	923, 1809, 1935
Bse8I	GATNNNNATC	2 cut(s)	554, 1281
BseDI	CCNNGG	8 cut(s)	337, 390, 609, 610, 646, 785, 1205, 1674
BseGI	GGATG	5 cut(s)	540, 856, 865, 1684, 1813
BseJI	GATNNNNATC	2 cut(s)	554, 1281
BseLI	CCNNNNNNNGG	7 cut(s)	374, 565, 596, 639, 934, 1145, 1792
BseMI	GCAATG	3 cut(s)	923, 1809, 1935
BseMII	CTCAG	6 cut(s)	499, 1131, 1161, 1445, 1757, 1940
BseNI	ACTGG	2 cut(s)	1366, 1554
BseRI	GAGGAG	3 cut(s)	587, 976, 1935
BseSI	GKGCMC	1 cut(s)	925
BseX3I	CGGCCG	1 cut(s)	334
BseXI	GCAGC	7 cut(s)	421, 424, 427, 445, 463, 1147, 1246
BseYI	CCCAGC	4 cut(s)	130, 155, 161, 863
BsgI	GTGCAG	2 cut(s)	452, 1892
Bsh1236I	CGCG	3 cut(s)	236, 296, 380
Bsh1285I	CGRYCG	3 cut(s)	225, 337, 458
BshFI	GGCC	4 cut(s)	336, 626, 1189, 1204
BsiEI	CGRYCG	3 cut(s)	225, 337, 458
BsiHKAI	GWGCWC	5 cut(s)	279, 639, 800, 925, 1154
BsiHKCI	CYCGRG	1 cut(s)	609
BslFI	GGGAC	4 cut(s)	35, 77, 656, 1498
BslI	CCNNNNNNNGG	7 cut(s)	374, 565, 596, 639, 934, 1145, 1792
BsmAI	GTCTC	2 cut(s)	336, 838
BsmBI	CGTCTC	2 cut(s)	336, 838
BsmFI	GGGAC	4 cut(s)	35, 77, 656, 1498
BsnI	GGCC	4 cut(s)	336, 626, 1189, 1204
BsoBI	CYCGRG	1 cut(s)	609
Bsp1286I	GDGCHC	8 cut(s)	8, 108, 279, 639, 654, 800, 925, 1154
Bsp19I	CCATGG	1 cut(s)	1674
Bsp68I	TCGCGA	1 cut(s)	296
BspANI	GGCC	4 cut(s)	336, 626, 1189, 1204
BspCNI	CTCAG	6 cut(s)	498, 1132, 1162, 1446, 1756, 1941
BspFNI	CGCG	3 cut(s)	236, 296, 380
BspMI	ACCTGC	2 cut(s)	627, 1327
BspPI	GGATC	4 cut(s)	146, 550, 563, 1233
BspQI	GCTCTTC	1 cut(s)	284
BspTI	CTTAAG	1 cut(s)	1160
BsrDI	GCAATG	3 cut(s)	923, 1809, 1935
BsrFI	RCCGGY	1 cut(s)	1610
BsrI	ACTGG	2 cut(s)	1366, 1554
BssAI	RCCGGY	1 cut(s)	1610
BssECI	CCNNGG	8 cut(s)	337, 390, 609, 610, 646, 785, 1205, 1674
BssNAI	GTATAC	1 cut(s)	1632
BssNI	GRCGYC	1 cut(s)	354
BssSI	CACGAG	1 cut(s)	1648
BssT1I	CCWWGG	1 cut(s)	1674
Bst1107I	GTATAC	1 cut(s)	1632
Bst2BI	CACGAG	1 cut(s)	1648
Bst4CI	ACNGT	3 cut(s)	647, 665, 1382
Bst6I	CTCTTC	2 cut(s)	284, 719
BstACI	GRCGYC	1 cut(s)	354
BstAFI	CTTAAG	1 cut(s)	1160
BstC8I	GCNNGC	4 cut(s)	420, 624, 1612, 1659
BstDEI	CTNAG	9 cut(s)	485, 1140, 1170, 1178, 1217, 1310, 1454, 1743, 1949
BstDSI	CCRYGG	4 cut(s)	337, 390, 646, 1674
BstEII	GGTNACC	2 cut(s)	475, 707
BstF5I	GGATG	5 cut(s)	540, 856, 865, 1684, 1813
BstFNI	CGCG	3 cut(s)	236, 296, 380
BstH2I	RGCGCY	1 cut(s)	1617
BstHHI	GCGC	3 cut(s)	238, 380, 1616
BstMAI	GTCTC	2 cut(s)	336, 838
BstMCI	CGRYCG	3 cut(s)	225, 337, 458
BstMWI	GCNNNNNNNGC	5 cut(s)	321, 327, 330, 333, 415
BstNSI	RCATGY	1 cut(s)	1610
BstPI	GGTNACC	2 cut(s)	475, 707
BstSCI	CCNGG	9 cut(s)	366, 471, 530, 589, 608, 609, 639, 691, 784
BstSLI	GKGCMC	1 cut(s)	925
BstUI	CGCG	3 cut(s)	236, 296, 380
BstV1I	GCAGC	7 cut(s)	421, 424, 427, 445, 463, 1147, 1246
BstV2I	GAAGAC	1 cut(s)	533
BstX2I	RGATCY	3 cut(s)	555, 1225, 1746
BstYI	RGATCY	3 cut(s)	555, 1225, 1746
BstZ17I	GTATAC	1 cut(s)	1632
BstZI	CGGCCG	1 cut(s)	334
BsuI	GTATCC	1 cut(s)	741
BsuRI	GGCC	4 cut(s)	336, 626, 1189, 1204
BtgI	CCRYGG	4 cut(s)	337, 390, 646, 1674
BtrI	CACGTC	2 cut(s)	247, 1766
BtsCI	GGATG	5 cut(s)	540, 856, 865, 1684, 1813
BtsI	GCAGTG	1 cut(s)	1514
BtsIMutI	CAGTG	1 cut(s)	1514
BtuMI	TCGCGA	1 cut(s)	296
BveI	ACCTGC	2 cut(s)	627, 1327
Cac8I	GCNNGC	4 cut(s)	420, 624, 1612, 1659
CaiI	CAGNNNCTG	2 cut(s)	418, 934
CfoI	GCGC	3 cut(s)	238, 380, 1616
Cfr10I	RCCGGY	1 cut(s)	1610
Cfr9I	CCCGGG	1 cut(s)	609
CseI	GACGC	1 cut(s)	343
Csp6I	GTAC	3 cut(s)	445, 844, 1851
CviAII	CATG	7 cut(s)	727, 890, 1013, 1334, 1532, 1607, 1675
CviQI	GTAC	3 cut(s)	445, 844, 1851
DdeI	CTNAG	9 cut(s)	485, 1140, 1170, 1178, 1217, 1310, 1454, 1743, 1949
DriI	GACNNNNNGTC	1 cut(s)	370
EaeI	YGGCCR	1 cut(s)	334
EagI	CGGCCG	1 cut(s)	334
Eam1104I	CTCTTC	2 cut(s)	284, 719
Eam1105I	GACNNNNNGTC	1 cut(s)	370
EarI	CTCTTC	2 cut(s)	284, 719
EciI	GGCGGA	2 cut(s)	437, 584
Ecl136II	GAGCTC	3 cut(s)	277, 798, 1152
EclXI	CGGCCG	1 cut(s)	334
Eco130I	CCWWGG	1 cut(s)	1674
Eco24I	GRGCYC	6 cut(s)	8, 108, 279, 654, 800, 1154
Eco52I	CGGCCG	1 cut(s)	334
Eco53kI	GAGCTC	3 cut(s)	277, 798, 1152
Eco88I	CYCGRG	1 cut(s)	609
Eco91I	GGTNACC	2 cut(s)	475, 707
EcoICRI	GAGCTC	3 cut(s)	277, 798, 1152
EcoO109I	RGGNCCY	3 cut(s)	91, 1288, 1485
EcoO65I	GGTNACC	2 cut(s)	475, 707
EcoT14I	CCWWGG	1 cut(s)	1674
EcoT22I	ATGCAT	1 cut(s)	972
EcoT38I	GRGCYC	6 cut(s)	8, 108, 279, 654, 800, 1154
ErhI	CCWWGG	1 cut(s)	1674
Esp3I	CGTCTC	2 cut(s)	336, 838
FaeI	CATG	7 cut(s)	730, 893, 1016, 1337, 1535, 1610, 1678
FaqI	GGGAC	4 cut(s)	35, 77, 656, 1498
FatI	CATG	7 cut(s)	726, 889, 1012, 1333, 1531, 1606, 1674
FauI	CCCGC	4 cut(s)	456, 615, 833, 1512
FbaI	TGATCA	3 cut(s)	1282, 1435, 1888
FblI	GTMKAC	2 cut(s)	249, 1631
FokI	GGATG	5 cut(s)	547, 863, 872, 1691, 1820
FriOI	GRGCYC	6 cut(s)	8, 108, 279, 654, 800, 1154
FspBI	CTAG	1 cut(s)	65
GlaI	GCGC	3 cut(s)	237, 379, 1615
GsaI	CCCAGC	4 cut(s)	134, 159, 165, 867
GsuI	CTGGAG	1 cut(s)	956
HaeII	RGCGCY	1 cut(s)	1617
HaeIII	GGCC	4 cut(s)	336, 626, 1189, 1204
HgaI	GACGC	1 cut(s)	343
HhaI	GCGC	3 cut(s)	238, 380, 1616
Hin1I	GRCGYC	1 cut(s)	354
Hin1II	CATG	7 cut(s)	730, 893, 1016, 1337, 1535, 1610, 1678
Hin6I	GCGC	3 cut(s)	236, 378, 1614
HinP1I	GCGC	3 cut(s)	236, 378, 1614
HincII	GTYRAC	1 cut(s)	1378
HindII	GTYRAC	1 cut(s)	1378
HindIII	AAGCTT	1 cut(s)	1115
HpaI	GTTAAC	1 cut(s)	1378
HphI	GGTGA	4 cut(s)	469, 719, 1516, 1694
Hpy166II	GTNNAC	4 cut(s)	250, 923, 1378, 1632
Hpy188III	TCNNGA	8 cut(s)	23, 295, 362, 523, 1064, 1286, 1648, 1754
Hpy8I	GTNNAC	4 cut(s)	250, 923, 1378, 1632
Hpy99I	CGWCG	6 cut(s)	128, 230, 320, 359, 494, 823
HpyAV	CCTTC	3 cut(s)	157, 301, 1498
HpyCH4III	ACNGT	3 cut(s)	647, 665, 1382
HpyCH4IV	ACGT	2 cut(s)	246, 1765
HpyCH4V	TGCA	8 cut(s)	433, 923, 970, 1322, 1763, 1802, 1873, 1928
HpyF10VI	GCNNNNNNNGC	5 cut(s)	321, 327, 330, 333, 415
HpyF3I	CTNAG	9 cut(s)	485, 1140, 1170, 1178, 1217, 1310, 1454, 1743, 1949
HpySE526I	ACGT	2 cut(s)	246, 1765
Hsp92I	GRCGYC	1 cut(s)	354
Hsp92II	CATG	7 cut(s)	730, 893, 1016, 1337, 1535, 1610, 1678
HspAI	GCGC	3 cut(s)	236, 378, 1614
KroI	GCCGGC	1 cut(s)	1610
KroNI	GCCGGC	1 cut(s)	1612
Ksp22I	TGATCA	3 cut(s)	1282, 1435, 1888
KspAI	GTTAAC	1 cut(s)	1378
LguI	GCTCTTC	1 cut(s)	284
Lsp1109I	GCAGC	7 cut(s)	421, 424, 427, 445, 463, 1147, 1246
LweI	GCATC	3 cut(s)	525, 850, 1267
MaeI	CTAG	1 cut(s)	65
MaeII	ACGT	2 cut(s)	246, 1765
MaeIII	GTNAC	4 cut(s)	475, 707, 1522, 2015
MflI	RGATCY	3 cut(s)	555, 1225, 1746
MhlI	GDGCHC	8 cut(s)	8, 108, 279, 639, 654, 800, 925, 1154
MluCI	AATT	6 cut(s)	18, 55, 771, 905, 1393, 1665
MlyI	GAGTC	3 cut(s)	380, 705, 1183
MmeI	TCCRAC	4 cut(s)	192, 936, 1352, 1793
Mph1103I	ATGCAT	1 cut(s)	972
MroNI	GCCGGC	1 cut(s)	1610
MseI	TTAA	5 cut(s)	909, 1113, 1161, 1377, 1958
MspA1I	CMGCKG	4 cut(s)	418, 436, 454, 1792
MspCI	CTTAAG	1 cut(s)	1160
MspR9I	CCNGG	9 cut(s)	368, 473, 532, 591, 610, 611, 641, 693, 786
MvnI	CGCG	3 cut(s)	236, 296, 380
MwoI	GCNNNNNNNGC	5 cut(s)	321, 327, 330, 333, 415
NaeI	GCCGGC	1 cut(s)	1612
NciI	CCSGG	9 cut(s)	368, 473, 532, 591, 610, 611, 641, 693, 786
NcoI	CCATGG	1 cut(s)	1674
NgoMIV	GCCGGC	1 cut(s)	1610
NlaIII	CATG	7 cut(s)	730, 893, 1016, 1337, 1535, 1610, 1678
NmeAIII	GCCGAG	1 cut(s)	1230
NmuCI	GTSAC	3 cut(s)	475, 707, 1522
NruI	TCGCGA	1 cut(s)	296
NsiI	ATGCAT	1 cut(s)	972
NspI	RCATGY	1 cut(s)	1610
PaqCI	CACCTGC	1 cut(s)	1327
PciSI	GCTCTTC	1 cut(s)	284
PcsI	WCGNNNNNNNCGW	2 cut(s)	252, 351
PdiI	GCCGGC	1 cut(s)	1612
PfeI	GAWTC	8 cut(s)	304, 545, 550, 586, 1009, 1060, 1125, 1249
PflFI	GACNNNGTC	2 cut(s)	245, 353
PflMI	CCANNNNNTGG	1 cut(s)	934
PfoI	TCCNGGA	2 cut(s)	639, 691
Ple19I	CGATCG	1 cut(s)	225
PleI	GAGTC	3 cut(s)	379, 704, 1182
PpsI	GAGTC	3 cut(s)	379, 704, 1182
PpuMI	RGGWCCY	3 cut(s)	91, 1288, 1485
PsiI	TTATAA	1 cut(s)	1107
Psp124BI	GAGCTC	3 cut(s)	279, 800, 1154
Psp5II	RGGWCCY	3 cut(s)	91, 1288, 1485
PspEI	GGTNACC	2 cut(s)	475, 707
PspFI	CCCAGC	4 cut(s)	130, 155, 161, 863
PspPPI	RGGWCCY	3 cut(s)	91, 1288, 1485
PstNI	CAGNNNCTG	2 cut(s)	418, 934
PsuI	RGATCY	3 cut(s)	555, 1225, 1746
PsyI	GACNNNGTC	2 cut(s)	245, 353
PvuI	CGATCG	1 cut(s)	225
PvuII	CAGCTG	1 cut(s)	418
RruI	TCGCGA	1 cut(s)	296
RsaI	GTAC	3 cut(s)	446, 845, 1852
RsaNI	GTAC	3 cut(s)	445, 844, 1851
SacI	GAGCTC	3 cut(s)	279, 800, 1154
SapI	GCTCTTC	1 cut(s)	284
SaqAI	TTAA	5 cut(s)	909, 1113, 1161, 1377, 1958
SchI	GAGTC	3 cut(s)	380, 705, 1183
ScrFI	CCNGG	9 cut(s)	368, 473, 532, 591, 610, 611, 641, 693, 786
SduI	GDGCHC	8 cut(s)	8, 108, 279, 639, 654, 800, 925, 1154
SfaNI	GCATC	3 cut(s)	525, 850, 1267
SmaI	CCCGGG	1 cut(s)	611
SmlI	CTYRAG	2 cut(s)	86, 1160
SmoI	CTYRAG	2 cut(s)	86, 1160
Sse9I	AATT	6 cut(s)	18, 55, 771, 905, 1393, 1665
SspMI	CTAG	1 cut(s)	65
SstI	GAGCTC	3 cut(s)	279, 800, 1154
StyD4I	CCNGG	9 cut(s)	366, 471, 530, 589, 608, 609, 639, 691, 784
StyI	CCWWGG	1 cut(s)	1674
TaaI	ACNGT	3 cut(s)	647, 665, 1382
TaiI	ACGT	2 cut(s)	249, 1768
TaqI	TCGA	9 cut(s)	102, 150, 221, 458, 548, 800, 1025, 1128, 1513
TasI	AATT	6 cut(s)	18, 55, 771, 905, 1393, 1665
TauI	GCSGC	8 cut(s)	233, 236, 324, 327, 330, 333, 336, 629
TfiI	GAWTC	8 cut(s)	304, 545, 550, 586, 1009, 1060, 1125, 1249
Tru1I	TTAA	5 cut(s)	909, 1113, 1161, 1377, 1958
Tru9I	TTAA	5 cut(s)	909, 1113, 1161, 1377, 1958
TscAI	CASTG	1 cut(s)	1514
TseFI	GTSAC	3 cut(s)	475, 707, 1522
TseI	GCWGC	7 cut(s)	409, 412, 415, 433, 451, 1135, 1234
Tsp45I	GTSAC	3 cut(s)	475, 707, 1522
TspDTI	ATGAA	4 cut(s)	1001, 1404, 1424, 2004
TspGWI	ACGGA	5 cut(s)	37, 500, 619, 622, 768
TspMI	CCCGGG	1 cut(s)	609
TspRI	CASTG	1 cut(s)	1514
Tth111I	GACNNNGTC	2 cut(s)	245, 353
Van91I	CCANNNNNTGG	1 cut(s)	934
Vha464I	CTTAAG	1 cut(s)	1160
VneI	GTGCAC	1 cut(s)	921
XapI	RAATTY	2 cut(s)	905, 1665
XceI	RCATGY	1 cut(s)	1610
XmaI	CCCGGG	1 cut(s)	609
XmiI	GTMKAC	2 cut(s)	249, 1631
XspI	CTAG	1 cut(s)	65
Zsp2I	ATGCAT	1 cut(s)	972

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.