Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0009622

Physical Location & Seq

Genomic Coordinates Reverse (-)

23360135 .. 23367316

Gene Structure 7182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1228800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2043 bp

ATGGGCTCTCTCATCCCAATTATAGACCTCAATAACCTCCCTGAATCCCCCGCCGGCTCCACCCCAAACACCGCCAACTCCGCCGTAGCCTTGAAAGTCCCCAAAATCGAACCGAAGCTTGAACCTTTCGACGAACCACTCGATACCCACCTGCCACAACTGCCTCCAGAACCCTTCATTCCCACACCTACCCCCAACTCTCTCACTAATTCCCAAATTACCCCATTCTCCGACCTGAACCACACCCCTGTATCTGAATCCTCCGCCGCACCTTCCGACCAGGAGAATGTGTACTCGGAGTTCCATCGAATTTCCGAGCTTTTCCGGACAGCTTTTGCTAAAGGGCTCCAGAGTATGGCCGACGGCGAGGTCGAAGTTTTGGACCCGGATGCGCGAGCAATTGTGCCGGTTCCTCAAGAAACCCAGTTATCAGAGGCCGTCGTTGCGCGGCGGAAATACCCCAAGCGGTCCTCCGAGCTCGTCCGGGTCACCGATCTGAACATCGAGGACCAGAGGTACTTCCGTGACGTGGTGAGGAAAACCCGAATGCTATATGACTCGATTCGAATACTATCAGTGGCAGCGGAGGAGAAGCGGAACCCGGGAAACGGGAAGCGAGTCCGAGGCGACTTGCAGGCCGCCACGGCGCTCAGGGATCGTGGGTTGTGGCTCAATCGCGATAAAAGGATCGTGGGTTCGATTCCCGGGGTCTATGTTGGCGATCTCTTCTTTTTCCGCATGGAGTTGTGTGTGGTTGGTTTACATGGCCAAGTCCAAGCTGGGATTGACTATCTTCCGGCGAGCCAGAGCTCGAATCATGAGCCAATTGCAACCAGCGTTATCGTTTCGGGTGGCTACGAGGACGATGAGGATGCCGGCGATGTGATTATCTACACCGGTCATGGAGGACAGGACAAGTTTAATAAGCAATGTGCTCACCAGAAGCTGGAAGGTGGGAATTTGGCATTGGAGAGGAGCATGCATTATGGTATTGAAGTGAGAGTTATCCGAGGAGTCAAATGCCAAGGCGGTATTTCGCAGAAGGTTTATGTTTATGATGGCTTGTATAGAATATTTGATTGTTGGTTTGATGTGGGCAAGTCGGGGTTTGGTGTTTATAAGTTTAAACTTCTGAGAATAGAAGGGCAAGGTGAGATGGGTAGCGCTATTCTTAAGTTTGCGGCTAGTCTTAGGACTAACCCCTTGTCTGTGAGGCAGTCAGGTTATCTCAGTCTGGATATTTCTAATAAGAAGGAGAATGTTCCAGTTTTGCTTTTCAATGACATTGATTCTGATCAGGACCCCATTTACTATGAGTATCTTGCGACAACTGTGTTTCCAACACAAGTGTTTCATCAGTCTGGGAAGGGAACCGGGTGTGATTGTATTGACAGTTGTTTTGGTAATTGCTTTTGTGCTATGAAAAATGGAGGTGAGTTTGCTTATGATGACAATGGGTGTCTTTTGAGAGGGAAGCCTGTGGTTTTTGAGTGTGGGCCCTTCTGCCATTGTCCCCCAAATTGCCGGAATCGTGTCACGCAAAAGGGTATGAGAAATAGACTGGAAGTGTTTAGGTCAAGGGAAACAGGTTGGGGAGTTAGGTCATTGAACTTGATACATGCTGGTGCCTTTATATGTGAGTATACAGGGGTTATTCTCACTAGGGAAATGGCTCAAATATTTGCAATGAATGGTGATACCTTGGTTTATCCACATCGGTTTTCTGATAGATGGACTGAATGGGGAGATTTATCTCAGATAGATCCTGGTTATGTACGTCCAACTTATCCTTCGATCCCACCATTGGATTTTGCTATGGATGTATCCAAAATGAGAAATGTTGCTTGTTATATGAGCCACAGTTCCACTCCGAATGTTATGGTGCAGTTTGTACTGTATGATCACAATAATGTGATGTTTCCTCATCTCATGCTATTTGCAATGGAGAACATCCCTCCTATGAGGGAGTTGAGCCTTGATTATGGGGTGGCTACTGTGTCTGAGGCTGATGAATGGACAGGGAAACTTGCTATCTGTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000775 GO:0000785 GO:0000790 GO:0000792 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005720 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008276 GO:0009292 GO:0009294 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0019222 GO:0019538 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0034641 GO:0036211 GO:0040029 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044728 GO:0044764 GO:0046483 GO:0048519 GO:0050789 GO:0051276 GO:0051704 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080188 GO:0090304 GO:0098687 GO:0140096 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

681

Amino Acids

75.82

Weight (kDa)

5.62

Isoelectric Point (pI)

44.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAD_SRA	PF02182	231 - 383	1.3e-53	SAD/SRA domain
Pre-SET	PF05033	415 - 511	1.2e-20	Pre-SET motif
SET	PF00856	530 - 662	5.1e-13	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009622)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13460 AT4G13460
fragaria_vesca	FvH4_2g20121
malus_domestica	MD13G1224000.v1.1 MD16G1228800.v1.1
prunus_persica	Prupe.1G050800_v2.0.a1 Prupe.1G050800_v2.0.a1 Prupe.1G050800_v2.0.a1 Prupe.1G050800_v2.0.a1
pyrus_communis	pycom13g19790
rosa_chinensis	RchiOBHm_Chr4g0395951
rosa_laevigata	RLG00000009586
rosa_multiflora	Rmu_sc0001103.1_g000009
rosa_roxburghii	Rroxscaffold_5G00340700
rosa_rugosa	Rorug03G0353200 Rorug03G0353300
rosa_samantha	Rh4AG063100 Rh4AG064100 Rh4BG062900 Rh4CG069200 Rh4DG059100
rosa_wichuraiana	Rw4G005180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1119
AarI	CACCTGC	1 cut(s)	159
AasI	GACNNNNNNGTC	1 cut(s)	368
Acc36I	ACCTGC	1 cut(s)	159
AccB1I	GGYRCC	1 cut(s)	1625
AccB7I	CCANNNNNTGG	2 cut(s)	355, 946
AccI	GTMKAC	1 cut(s)	1643
AccII	CGCG	3 cut(s)	394, 448, 678
AccIII	TCCGGA	1 cut(s)	324
AclWI	GGATC	4 cut(s)	663, 695, 1757, 1789
AcoI	YGGCCR	2 cut(s)	357, 766
AcsI	RAATTY	2 cut(s)	309, 958
AfaI	GTAC	4 cut(s)	293, 518, 1776, 1893
AfeI	AGCGCT	1 cut(s)	1165
AfiI	CCNNNNNNNGG	5 cut(s)	355, 529, 608, 946, 1804
AflII	CTTAAG	1 cut(s)	1172
AgeI	ACCGGT	1 cut(s)	896
AgsI	TTSAA	5 cut(s)	94, 122, 995, 1279, 1609
AjiI	CACGTC	1 cut(s)	529
AjnI	CCWGG	2 cut(s)	279, 1765
AjuI	GAANNNNNNNTTGG	4 cut(s)	950, 982, 1774, 1806
AloI	GAACNNNNNNTCC	2 cut(s)	679, 711
AluBI	AGCT	7 cut(s)	118, 319, 332, 478, 779, 810, 946
AluI	AGCT	7 cut(s)	118, 319, 332, 478, 779, 810, 946
Alw21I	GWGCWC	3 cut(s)	480, 812, 937
AlwI	GGATC	4 cut(s)	663, 695, 1757, 1789
AlwNI	CAGNNNCTG	1 cut(s)	946
Ama87I	CYCGRG	2 cut(s)	601, 704
Aor13HI	TCCGGA	1 cut(s)	324
Aor51HI	AGCGCT	1 cut(s)	1165
AoxI	GGCC	5 cut(s)	357, 435, 636, 766, 1496
ApaI	GGGCCC	1 cut(s)	1500
ApeKI	GCWGC	1 cut(s)	581
ApoI	RAATTY	2 cut(s)	309, 958
ArsI	GACNNNNNNTTYG	2 cut(s)	1382, 1414
AsiGI	ACCGGT	1 cut(s)	896
AspLEI	GCGC	4 cut(s)	394, 448, 649, 1166
AspS9I	GGNCC	6 cut(s)	382, 468, 508, 1300, 1496, 1497
AsuC2I	CCSGG	7 cut(s)	386, 485, 602, 603, 705, 706, 1375
AsuHPI	GGTGA	6 cut(s)	481, 544, 929, 1163, 1445, 1706
AsuII	TTCGAA	1 cut(s)	565
AvaI	CYCGRG	2 cut(s)	601, 704
AvaII	GGWCC	4 cut(s)	382, 468, 508, 1300
BaeGI	GKGCMC	1 cut(s)	1500
BaeI	ACNNNNGTAYC	6 cut(s)	234, 267, 508, 541, 1689, 1722
BalI	TGGCCA	1 cut(s)	768
BanI	GGYRCC	1 cut(s)	1625
BanII	GRGCYC	5 cut(s)	8, 348, 480, 812, 1500
Bbv12I	GWGCWC	3 cut(s)	480, 812, 937
BbvI	GCAGC	1 cut(s)	593
BccI	CCATC	4 cut(s)	312, 1052, 1150, 1725
BceAI	ACGGC	4 cut(s)	68, 379, 422, 660
BcgI	CGANNNNNNTGC	2 cut(s)	854, 888
BciT130I	CCWGG	2 cut(s)	281, 1767
BciVI	GTATCC	1 cut(s)	1834
BclI	TGATCA	2 cut(s)	1294, 1900
BcnI	CCSGG	7 cut(s)	386, 485, 602, 603, 705, 706, 1375
BfaI	CTAG	2 cut(s)	1185, 1662
BfoI	RGCGCY	2 cut(s)	650, 1167
BfrI	CTTAAG	1 cut(s)	1172
BfuAI	ACCTGC	1 cut(s)	159
BfuI	GTATCC	1 cut(s)	1834
BglI	GCCNNNNNGGC	1 cut(s)	644
BisI	GCNGC	5 cut(s)	267, 449, 582, 639, 1182
BlsI	GCNGC	5 cut(s)	268, 450, 583, 640, 1183
Bme1390I	CCNGG	9 cut(s)	281, 386, 485, 602, 603, 705, 706, 1375, 1767
Bme18I	GGWCC	4 cut(s)	382, 468, 508, 1300
BmeT110I	CYCGRG	2 cut(s)	601, 704
BmgBI	CACGTC	1 cut(s)	529
BmgT120I	GGNCC	6 cut(s)	382, 468, 508, 1300, 1496, 1497
BmiI	GGNNCC	9 cut(s)	58, 347, 384, 411, 599, 1302, 1372, 1498, 1627
BmrFI	CCNGG	9 cut(s)	281, 386, 485, 602, 603, 705, 706, 1375, 1767
BmrI	ACTGGG	1 cut(s)	418
BmsI	GCATC	2 cut(s)	379, 862
BmuI	ACTGGG	1 cut(s)	418
BpmI	CTGGAG	2 cut(s)	150, 332
Bpu10I	CCTNAGC	1 cut(s)	650
Bpu14I	TTCGAA	1 cut(s)	565
BpuEI	CTTGAG	1 cut(s)	399
BpuMI	CCSGG	7 cut(s)	386, 485, 602, 603, 705, 706, 1375
BsaBI	GATNNNNATC	1 cut(s)	1293
BsaJI	CCNNGG	8 cut(s)	601, 622, 642, 704, 705, 1009, 1024, 1701
BsaWI	WCCGGW	2 cut(s)	324, 896
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
Bsc4I	CCNNNNNNNGG	5 cut(s)	355, 529, 608, 946, 1804
Bse118I	RCCGGY	4 cut(s)	53, 406, 875, 896
Bse1I	ACTGG	3 cut(s)	424, 1265, 1566
Bse3DI	GCAATG	3 cut(s)	935, 1692, 1947
Bse8I	GATNNNNATC	1 cut(s)	1293
BseAI	TCCGGA	1 cut(s)	324
BseBI	CCWGG	2 cut(s)	281, 1767
BseDI	CCNNGG	8 cut(s)	601, 622, 642, 704, 705, 1009, 1024, 1701
BseGI	GGATG	5 cut(s)	12, 394, 877, 1825, 1950
BseJI	GATNNNNATC	1 cut(s)	1293
BseLI	CCNNNNNNNGG	5 cut(s)	355, 529, 608, 946, 1804
BseMI	GCAATG	3 cut(s)	935, 1692, 1947
BseMII	CTCAG	5 cut(s)	664, 1124, 1243, 1769, 1992
BseNI	ACTGG	3 cut(s)	424, 1265, 1566
BseRI	GAGGAG	3 cut(s)	602, 988, 1026
BseSI	GKGCMC	1 cut(s)	1500
BseXI	GCAGC	1 cut(s)	593
BseYI	CCCAGC	1 cut(s)	779
BsgI	GTGCAG	1 cut(s)	1904
Bsh1236I	CGCG	3 cut(s)	394, 448, 678
BshFI	GGCC	5 cut(s)	359, 437, 638, 768, 1498
BshNI	GGYRCC	1 cut(s)	1625
BshTI	ACCGGT	1 cut(s)	896
BsiHKAI	GWGCWC	3 cut(s)	480, 812, 937
BsiHKCI	CYCGRG	2 cut(s)	601, 704
BslFI	GGGAC	2 cut(s)	83, 1497
BslI	CCNNNNNNNGG	5 cut(s)	355, 529, 608, 946, 1804
BsmFI	GGGAC	2 cut(s)	83, 1497
BsmI	GAATGC	1 cut(s)	552
BsnI	GGCC	5 cut(s)	359, 437, 638, 768, 1498
BsoBI	CYCGRG	2 cut(s)	601, 704
Bsp119I	TTCGAA	1 cut(s)	565
Bsp120I	GGGCCC	1 cut(s)	1496
Bsp1286I	GDGCHC	6 cut(s)	8, 348, 480, 812, 937, 1500
Bsp13I	TCCGGA	1 cut(s)	324
Bsp143I	GATC	8 cut(s)	493, 655, 687, 721, 1294, 1762, 1794, 1900
Bsp68I	TCGCGA	1 cut(s)	678
BspANI	GGCC	5 cut(s)	359, 437, 638, 768, 1498
BspCNI	CTCAG	5 cut(s)	663, 1125, 1242, 1768, 1993
BspEI	TCCGGA	1 cut(s)	324
BspFNI	CGCG	3 cut(s)	394, 448, 678
BspHI	TCATGA	1 cut(s)	817
BspLI	GGNNCC	9 cut(s)	58, 347, 384, 411, 599, 1302, 1372, 1498, 1627
BspMI	ACCTGC	1 cut(s)	159
BspPI	GGATC	4 cut(s)	663, 695, 1757, 1789
BspT104I	TTCGAA	1 cut(s)	565
BspT107I	GGYRCC	1 cut(s)	1625
BspTI	CTTAAG	1 cut(s)	1172
BsrDI	GCAATG	3 cut(s)	935, 1692, 1947
BsrFI	RCCGGY	4 cut(s)	53, 406, 875, 896
BsrI	ACTGG	3 cut(s)	424, 1265, 1566
BssAI	RCCGGY	4 cut(s)	53, 406, 875, 896
BssECI	CCNNGG	8 cut(s)	601, 622, 642, 704, 705, 1009, 1024, 1701
BssMI	GATC	8 cut(s)	493, 655, 687, 721, 1294, 1762, 1794, 1900
BssNAI	GTATAC	1 cut(s)	1644
BssT1I	CCWWGG	2 cut(s)	1024, 1701
Bst1107I	GTATAC	1 cut(s)	1644
Bst2UI	CCWGG	2 cut(s)	281, 1767
Bst4CI	ACNGT	5 cut(s)	1333, 1394, 1862, 1896, 1996
Bst6I	CTCTTC	1 cut(s)	731
BstAFI	CTTAAG	1 cut(s)	1172
BstBI	TTCGAA	1 cut(s)	565
BstC8I	GCNNGC	6 cut(s)	55, 396, 636, 802, 877, 980
BstDEI	CTNAG	6 cut(s)	650, 1133, 1190, 1229, 1755, 2001
BstDSI	CCRYGG	1 cut(s)	642
BstEII	GGTNACC	1 cut(s)	487
BstF5I	GGATG	5 cut(s)	12, 394, 877, 1825, 1950
BstFNI	CGCG	3 cut(s)	394, 448, 678
BstH2I	RGCGCY	2 cut(s)	650, 1167
BstHHI	GCGC	4 cut(s)	394, 448, 649, 1166
BstKTI	GATC	8 cut(s)	496, 658, 690, 724, 1297, 1765, 1797, 1903
BstMBI	GATC	8 cut(s)	493, 655, 687, 721, 1294, 1762, 1794, 1900
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 160, 443, 644
BstNI	CCWGG	2 cut(s)	281, 1767
BstNSI	RCATGY	2 cut(s)	982, 1622
BstPI	GGTNACC	1 cut(s)	487
BstSCI	CCNGG	9 cut(s)	279, 384, 483, 600, 601, 703, 704, 1373, 1765
BstSLI	GKGCMC	1 cut(s)	1500
BstUI	CGCG	3 cut(s)	394, 448, 678
BstV1I	GCAGC	1 cut(s)	593
BstX2I	RGATCY	1 cut(s)	1762
BstYI	RGATCY	1 cut(s)	1762
BstZ17I	GTATAC	1 cut(s)	1644
BsuI	GTATCC	1 cut(s)	1834
BsuRI	GGCC	5 cut(s)	359, 437, 638, 768, 1498
BtgI	CCRYGG	1 cut(s)	642
BtgZI	GCGATG	1 cut(s)	894
BtrI	CACGTC	1 cut(s)	529
BtsCI	GGATG	5 cut(s)	12, 394, 877, 1825, 1950
BtsIMutI	CAGTG	1 cut(s)	582
BtuMI	TCGCGA	1 cut(s)	678
BveI	ACCTGC	1 cut(s)	159
Cac8I	GCNNGC	6 cut(s)	55, 396, 636, 802, 877, 980
CaiI	CAGNNNCTG	1 cut(s)	946
CciI	TCATGA	1 cut(s)	817
CfoI	GCGC	4 cut(s)	394, 448, 649, 1166
Cfr10I	RCCGGY	4 cut(s)	53, 406, 875, 896
Cfr13I	GGNCC	6 cut(s)	382, 468, 508, 1300, 1496, 1497
Cfr9I	CCCGGG	2 cut(s)	601, 704
Csp6I	GTAC	4 cut(s)	292, 517, 1775, 1892
CspAI	ACCGGT	1 cut(s)	896
CviAII	CATG	7 cut(s)	739, 764, 818, 902, 979, 1619, 1930
CviQI	GTAC	4 cut(s)	292, 517, 1775, 1892
DdeI	CTNAG	6 cut(s)	650, 1133, 1190, 1229, 1755, 2001
DpnI	GATC	8 cut(s)	495, 657, 689, 723, 1296, 1764, 1796, 1902
DpnII	GATC	8 cut(s)	493, 655, 687, 721, 1294, 1762, 1794, 1900
DraI	TTTAAA	1 cut(s)	1126
DrdI	GACNNNNNNGTC	1 cut(s)	368
DseDI	GACNNNNNNGTC	1 cut(s)	368
EaeI	YGGCCR	2 cut(s)	357, 766
Eam1104I	CTCTTC	1 cut(s)	731
EarI	CTCTTC	1 cut(s)	731
EciI	GGCGGA	3 cut(s)	70, 253, 466
Ecl136II	GAGCTC	2 cut(s)	478, 810
Eco130I	CCWWGG	2 cut(s)	1024, 1701
Eco24I	GRGCYC	5 cut(s)	8, 348, 480, 812, 1500
Eco47I	GGWCC	4 cut(s)	382, 468, 508, 1300
Eco47III	AGCGCT	1 cut(s)	1165
Eco53kI	GAGCTC	2 cut(s)	478, 810
Eco88I	CYCGRG	2 cut(s)	601, 704
Eco91I	GGTNACC	1 cut(s)	487
EcoICRI	GAGCTC	2 cut(s)	478, 810
EcoO109I	RGGNCCY	2 cut(s)	1300, 1497
EcoO65I	GGTNACC	1 cut(s)	487
EcoRII	CCWGG	2 cut(s)	279, 1765
EcoT14I	CCWWGG	2 cut(s)	1024, 1701
EcoT22I	ATGCAT	1 cut(s)	984
EcoT38I	GRGCYC	5 cut(s)	8, 348, 480, 812, 1500
ErhI	CCWWGG	2 cut(s)	1024, 1701
FaeI	CATG	7 cut(s)	742, 767, 821, 905, 982, 1622, 1933
FaqI	GGGAC	2 cut(s)	83, 1497
FatI	CATG	7 cut(s)	738, 763, 817, 901, 978, 1618, 1929
FauI	CCCGC	1 cut(s)	58
FbaI	TGATCA	2 cut(s)	1294, 1900
FblI	GTMKAC	1 cut(s)	1643
Fnu4HI	GCNGC	5 cut(s)	267, 449, 582, 639, 1182
FokI	GGATG	4 cut(s)	401, 884, 1832, 1937
FriOI	GRGCYC	5 cut(s)	8, 348, 480, 812, 1500
Fsp4HI	GCNGC	5 cut(s)	267, 449, 582, 639, 1182
FspBI	CTAG	2 cut(s)	1185, 1662
GlaI	GCGC	4 cut(s)	393, 447, 648, 1165
GluI	GCNGC	5 cut(s)	267, 449, 582, 639, 1182
GsaI	CCCAGC	1 cut(s)	783
GsuI	CTGGAG	2 cut(s)	150, 332
HaeII	RGCGCY	2 cut(s)	650, 1167
HaeIII	GGCC	5 cut(s)	359, 437, 638, 768, 1498
HhaI	GCGC	4 cut(s)	394, 448, 649, 1166
Hin1II	CATG	7 cut(s)	742, 767, 821, 905, 982, 1622, 1933
Hin6I	GCGC	4 cut(s)	392, 446, 647, 1164
HinP1I	GCGC	4 cut(s)	392, 446, 647, 1164
HindIII	AAGCTT	1 cut(s)	116
HphI	GGTGA	6 cut(s)	481, 544, 929, 1163, 1445, 1706
Hpy166II	GTNNAC	3 cut(s)	292, 761, 1644
Hpy188III	TCNNGA	8 cut(s)	167, 325, 349, 416, 677, 818, 1235, 1298
Hpy8I	GTNNAC	3 cut(s)	292, 761, 1644
Hpy99I	CGWCG	3 cut(s)	134, 365, 443
HpyAV	CCTTC	9 cut(s)	184, 282, 944, 1036, 1136, 1246, 1360, 1510, 1800
HpyCH4III	ACNGT	5 cut(s)	1333, 1394, 1862, 1896, 1996
HpyCH4IV	ACGT	2 cut(s)	528, 1777
HpyCH4V	TGCA	6 cut(s)	634, 830, 982, 1685, 1885, 1940
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 160, 443, 644
HpyF3I	CTNAG	6 cut(s)	650, 1133, 1190, 1229, 1755, 2001
HpySE526I	ACGT	2 cut(s)	528, 1777
Hsp92II	CATG	7 cut(s)	742, 767, 821, 905, 982, 1622, 1933
HspAI	GCGC	4 cut(s)	392, 446, 647, 1164
Kpn2I	TCCGGA	1 cut(s)	324
KroI	GCCGGC	2 cut(s)	53, 875
KroNI	GCCGGC	2 cut(s)	55, 877
Ksp22I	TGATCA	2 cut(s)	1294, 1900
Kzo9I	GATC	8 cut(s)	493, 655, 687, 721, 1294, 1762, 1794, 1900
LmnI	GCTCC	3 cut(s)	62, 351, 975
Lsp1109I	GCAGC	1 cut(s)	593
LweI	GCATC	2 cut(s)	379, 862
MaeI	CTAG	2 cut(s)	1185, 1662
MaeII	ACGT	2 cut(s)	528, 1777
MaeIII	GTNAC	4 cut(s)	487, 524, 1534, 2036
MalI	GATC	8 cut(s)	495, 657, 689, 723, 1296, 1764, 1796, 1902
MboI	GATC	8 cut(s)	493, 655, 687, 721, 1294, 1762, 1794, 1900
MboII	GAAGA	2 cut(s)	718, 785
MfeI	CAATTG	2 cut(s)	399, 825
MflI	RGATCY	1 cut(s)	1762
MhlI	GDGCHC	6 cut(s)	8, 348, 480, 812, 937, 1500
MlsI	TGGCCA	1 cut(s)	768
MluCI	AATT	9 cut(s)	18, 208, 216, 309, 399, 825, 958, 1405, 1519
MluNI	TGGCCA	1 cut(s)	768
MlyI	GAGTC	3 cut(s)	551, 627, 1023
MmeI	TCCRAC	4 cut(s)	255, 300, 1364, 1805
Mox20I	TGGCCA	1 cut(s)	768
Mph1103I	ATGCAT	1 cut(s)	984
MroI	TCCGGA	1 cut(s)	324
MroNI	GCCGGC	2 cut(s)	53, 875
MscI	TGGCCA	1 cut(s)	768
MseI	TTAA	3 cut(s)	921, 1125, 1173
MslI	CAYNNNNRTG	2 cut(s)	1623, 1908
Msp20I	TGGCCA	1 cut(s)	768
MspA1I	CMGCKG	1 cut(s)	584
MspCI	CTTAAG	1 cut(s)	1172
MspR9I	CCNGG	9 cut(s)	281, 386, 485, 602, 603, 705, 706, 1375, 1767
MssI	GTTTAAAC	1 cut(s)	1126
MunI	CAATTG	2 cut(s)	399, 825
Mva1269I	GAATGC	1 cut(s)	552
MvaI	CCWGG	2 cut(s)	281, 1767
MvnI	CGCG	3 cut(s)	394, 448, 678
MwoI	GCNNNNNNNGC	4 cut(s)	80, 160, 443, 644
NaeI	GCCGGC	2 cut(s)	55, 877
NciI	CCSGG	7 cut(s)	386, 485, 602, 603, 705, 706, 1375
NdeII	GATC	8 cut(s)	493, 655, 687, 721, 1294, 1762, 1794, 1900
NgoMIV	GCCGGC	2 cut(s)	53, 875
NlaIII	CATG	7 cut(s)	742, 767, 821, 905, 982, 1622, 1933
NlaIV	GGNNCC	9 cut(s)	58, 347, 384, 411, 599, 1302, 1372, 1498, 1627
NmuCI	GTSAC	3 cut(s)	487, 524, 1534
NruI	TCGCGA	1 cut(s)	678
NsiI	ATGCAT	1 cut(s)	984
NspI	RCATGY	2 cut(s)	982, 1622
NspV	TTCGAA	1 cut(s)	565
PaeI	GCATGC	1 cut(s)	982
PagI	TCATGA	1 cut(s)	817
PaqCI	CACCTGC	1 cut(s)	159
PcsI	WCGNNNNNNNCGW	2 cut(s)	138, 369
PctI	GAATGC	1 cut(s)	552
PdiI	GCCGGC	2 cut(s)	55, 877
PfeI	GAWTC	7 cut(s)	44, 257, 562, 700, 814, 1289, 1528
PflMI	CCANNNNNTGG	2 cut(s)	355, 946
PinAI	ACCGGT	1 cut(s)	896
PkrI	GCNGC	5 cut(s)	268, 450, 583, 640, 1183
PleI	GAGTC	3 cut(s)	551, 626, 1022
PmeI	GTTTAAAC	1 cut(s)	1126
PpsI	GAGTC	3 cut(s)	551, 626, 1022
PpuMI	RGGWCCY	1 cut(s)	1300
PsiI	TTATAA	1 cut(s)	1119
Psp124BI	GAGCTC	2 cut(s)	480, 812
Psp5II	RGGWCCY	1 cut(s)	1300
Psp6I	CCWGG	2 cut(s)	279, 1765
PspEI	GGTNACC	1 cut(s)	487
PspFI	CCCAGC	1 cut(s)	779
PspGI	CCWGG	2 cut(s)	279, 1765
PspN4I	GGNNCC	9 cut(s)	58, 347, 384, 411, 599, 1302, 1372, 1498, 1627
PspOMI	GGGCCC	1 cut(s)	1496
PspPI	GGNCC	6 cut(s)	382, 468, 508, 1300, 1496, 1497
PspPPI	RGGWCCY	1 cut(s)	1300
PsrI	GAACNNNNNNTAC	2 cut(s)	284, 316
PstNI	CAGNNNCTG	1 cut(s)	946
PsuI	RGATCY	1 cut(s)	1762
RruI	TCGCGA	1 cut(s)	678
RsaI	GTAC	4 cut(s)	293, 518, 1776, 1893
RsaNI	GTAC	4 cut(s)	292, 517, 1775, 1892
RseI	CAYNNNNRTG	2 cut(s)	1623, 1908
SacI	GAGCTC	2 cut(s)	480, 812
SaqAI	TTAA	3 cut(s)	921, 1125, 1173
SatI	GCNGC	5 cut(s)	267, 449, 582, 639, 1182
Sau3AI	GATC	8 cut(s)	493, 655, 687, 721, 1294, 1762, 1794, 1900
Sau96I	GGNCC	6 cut(s)	382, 468, 508, 1300, 1496, 1497
SchI	GAGTC	3 cut(s)	551, 627, 1023
ScrFI	CCNGG	9 cut(s)	281, 386, 485, 602, 603, 705, 706, 1375, 1767
SduI	GDGCHC	6 cut(s)	8, 348, 480, 812, 937, 1500
SfaNI	GCATC	2 cut(s)	379, 862
SfuI	TTCGAA	1 cut(s)	565
SinI	GGWCC	4 cut(s)	382, 468, 508, 1300
SmaI	CCCGGG	2 cut(s)	603, 706
SmiMI	CAYNNNNRTG	2 cut(s)	1623, 1908
SmlI	CTYRAG	2 cut(s)	414, 1172
SmoI	CTYRAG	2 cut(s)	414, 1172
SphI	GCATGC	1 cut(s)	982
Sse9I	AATT	9 cut(s)	18, 208, 216, 309, 399, 825, 958, 1405, 1519
SspI	AATATT	2 cut(s)	1074, 1680
SspMI	CTAG	2 cut(s)	1185, 1662
SstI	GAGCTC	2 cut(s)	480, 812
StyD4I	CCNGG	9 cut(s)	279, 384, 483, 600, 601, 703, 704, 1373, 1765
StyI	CCWWGG	2 cut(s)	1024, 1701
TaaI	ACNGT	5 cut(s)	1333, 1394, 1862, 1896, 1996
TaiI	ACGT	2 cut(s)	531, 1780
TasI	AATT	9 cut(s)	18, 208, 216, 309, 399, 825, 958, 1405, 1519
TatI	WGTACW	2 cut(s)	291, 1891
TauI	GCSGC	4 cut(s)	269, 451, 641, 1184
TfiI	GAWTC	7 cut(s)	44, 257, 562, 700, 814, 1289, 1528
Tru1I	TTAA	3 cut(s)	921, 1125, 1173
Tru9I	TTAA	3 cut(s)	921, 1125, 1173
TscAI	CASTG	1 cut(s)	582
TseFI	GTSAC	3 cut(s)	487, 524, 1534
TseI	GCWGC	1 cut(s)	581
Tsp45I	GTSAC	3 cut(s)	487, 524, 1534
TspDTI	ATGAA	5 cut(s)	166, 1343, 1436, 1703, 2025
TspGWI	ACGGA	1 cut(s)	512
TspMI	CCCGGG	2 cut(s)	601, 704
TspRI	CASTG	1 cut(s)	582
Van91I	CCANNNNNTGG	2 cut(s)	355, 946
Vha464I	CTTAAG	1 cut(s)	1172
VpaK11BI	GGWCC	4 cut(s)	382, 468, 508, 1300
XapI	RAATTY	2 cut(s)	309, 958
XceI	RCATGY	2 cut(s)	982, 1622
XcmI	CCANNNNNNNNNTGG	1 cut(s)	776
XmaI	CCCGGG	2 cut(s)	601, 704
XmiI	GTMKAC	1 cut(s)	1643
XspI	CTAG	2 cut(s)	1185, 1662
Zsp2I	ATGCAT	1 cut(s)	984

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.