Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0009622

Physical Location & Seq

Genomic Coordinates Reverse (-)

11221507 .. 11231092

Gene Structure 9586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG062900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2070 bp

ATGCCCATCTCTCTTTCTACTCAAACCCACTTCTTTCCTTTGACCATGGGCTCTCTCCTCCCAATTCTTGACCTCAATGCCTCCCCTCAATCCGTCCCCAATTCAACCCTAGCCACCGCCACCATATCCCTCAAGGTCCCCAAAATCGAGCCCAAGCCCGAACCTTGCGACGACCCAGCTCCCCAACCCCCCTTCGATCCCAGCCCCAGCTCCGACATTTTCCCCAATCCCCAAACTGCCCCTCTCCCCCTCCCCCACCAGACCTCGATCGTCGCCGCCGCGCCGGACCACGTCTACTCCGAGTTCCACCGCATTTCGGAGCTCTTCCACACCGCCTTCGCGAAAGGGATTCAGAACTGCGACGGCGGCGGCGGCGGCGGCGGCCGTGGAGACGAGGACGGCGTCGTTCTGGACCCGGAGTCCGGCGCGATTGTTCCCGTGGAGGAGAACAACCAGCAGCAGCAGCTGGCGGAGGTCGTGCAGCGGAAGAAGTACCCGCAGCGGTCGAACGAGCTGGTCCGGGTCACCGATCTCAGCGACGAGGACCACCGCTACTTCCGTGAGGTCGTCAGGAAGACCCGGATGCTCTACGATTCGATTCGGATCCTCTCGGTGGCGGAGGAGGACAAGAAGAATCCGGGTCAGGGGAAACGGACCCGGGGCGACCTGCGGGCCGCCTCCGTGCTCCGGGACCGTGGGCTCTGGCTCAACCGTGATAAGCGGATTGTGGGGTCCATTCCGGGAGTCTATGTTGGTGACCTCTTCTTCTTTCGCATGGAGCTATGTGTGGTTGGGATACACGGACAAGTCCAAGCTGGAATTGACTATCTTCCGGGGAGCCAGAGCTCGAATAGGGAGCCGATTGCGACGAGCATTATCGTCTCCGGCGGGTACGAGGACGATGAGGATGCTGGGGATATTATTATCTACACAGGACATGGAGGGCAGGACAAGTTTAATAGGCAATGTGCACACCAGAAGCTGGAGGGTGGGAACTTGGCGTTGGAGAGGAGTATGCATTACGGGATTGAAGTGAGGGTTATTAGGGGGAGGAAGATTCATGGAGCTGTTTCGAGTAAGGTGTATGTTTATGATGGTTTGTATAGGATTCTTGAAACTTGGCTTGATGTTGGGAAGTCGGGGTTTGGTGTTTATAAGTTTAAGCTTTTGAGAATCGAGGGGCAGCCTGAGATGGGGAGCTCCGTTCTTAAGTTTGCTGAGAGTCTTAGGAGTAGGCCGTTGAGTGTGAGGCCGAGGGGTTATCTTAGTTTGGATCTTTCGCAGCAGAGGGAGAAGATTCCGGTGTTGCTTTTCAATGACATTGATGCTGATCAGGACCCCTTGTATTATGAGTATCTTAGGACACCTGCATTTCCAACTCATGTGTATCATCAGTCGGCAAATGGAACTGGCTGTGAATGTGTTAACGGTTGTAATGAAAATTGCTTTTGTGCTATGAAAAATGGAGGGGAGTTTCCTTATGATCAGAATGGGTTTCTTCTGAGGGGGAAGCCTGTGGTATTTGAGTGTGGGACCTTCTGCCGTTGCCCCCCGCAGTGTCGAAATCGTGTCACCCAACATGGATTGAGAAATAGACTGGAAGTGTTTAGATCAAGGGAAACAGGTTGGGGGGTTAGGTCTTTGGACTTGATACATGCCGGCGCTTTTATATGTGAGTATACAGGAGTTATTCTCACGAGGGAGCAGGCTCAAATTTTTTCCATGGATGGTGATAGCTTGATCTATCCCCATCGGTTTTCTGATAAATGGGCAGAATGGGGAGATTTATCTCAGATCTATCCTGATTATGCGCGTCCAACTTATCCGGCAATCCCACCGCTGGATTTTGCAATGGATGTGTCAAAAATGAGGAATGTTGCTTGTTATATGAGCCAGAGTACCACTCCAAATGTGATGGTGCAGTTCGTTCTATTTGATCACAACAACTTGATGTTTCCTCATCTTATGCTATTTGCAATGGAGAACATTCCTCCTCTGAGGGAGTTAAGCCTTGACTATGGGGTGGCGGTGGCTGATGAATGGACAGGGAAACTTGCTATCTGTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000775 GO:0000785 GO:0000790 GO:0000792 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005720 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008276 GO:0009292 GO:0009294 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0019222 GO:0019538 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0034641 GO:0036211 GO:0040029 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044728 GO:0044764 GO:0046483 GO:0048519 GO:0050789 GO:0051276 GO:0051704 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080188 GO:0090304 GO:0098687 GO:0140096 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

689

Amino Acids

77.02

Weight (kDa)

5.88

Isoelectric Point (pI)

44.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAD_SRA	PF02182	243 - 395	3.7e-52	SAD/SRA domain
Pre-SET	PF05033	427 - 523	2.5e-20	Pre-SET motif
SET	PF00856	542 - 674	4.2e-11	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009622)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13460 AT4G13460
fragaria_vesca	FvH4_2g20121
malus_domestica	MD13G1224000.v1.1 MD16G1228800.v1.1
prunus_persica	Prupe.1G050800_v2.0.a1 Prupe.1G050800_v2.0.a1 Prupe.1G050800_v2.0.a1 Prupe.1G050800_v2.0.a1
pyrus_communis	pycom13g19790
rosa_chinensis	RchiOBHm_Chr4g0395951
rosa_laevigata	RLG00000009586
rosa_multiflora	Rmu_sc0001103.1_g000009
rosa_roxburghii	Rroxscaffold_5G00340700
rosa_rugosa	Rorug03G0353200 Rorug03G0353300
rosa_samantha	Rh4AG063100 Rh4AG064100 Rh4BG062900 Rh4CG069200 Rh4DG059100
rosa_wichuraiana	Rw4G005180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1155
AarI	CACCTGC	1 cut(s)	1375
Acc36I	ACCTGC	2 cut(s)	675, 1375
AccB7I	CCANNNNNTGG	1 cut(s)	982
AccI	GTMKAC	2 cut(s)	294, 1679
AccII	CGCG	4 cut(s)	281, 341, 428, 1813
AclWI	GGATC	4 cut(s)	191, 598, 611, 1281
AcoI	YGGCCR	1 cut(s)	382
AcsI	RAATTY	1 cut(s)	1713
AcyI	GRCGYC	1 cut(s)	402
AfaI	GTAC	3 cut(s)	494, 893, 1900
AfiI	CCNNNNNNNGG	8 cut(s)	316, 422, 613, 644, 687, 982, 1193, 1840
AflII	CTTAAG	1 cut(s)	1208
AgsI	TTSAA	4 cut(s)	105, 1031, 1115, 1315
AhdI	GACNNNNNGTC	1 cut(s)	418
AjiI	CACGTC	1 cut(s)	292
AjuI	GAANNNNNNNTTGG	2 cut(s)	986, 1018
Alw21I	GWGCWC	5 cut(s)	324, 687, 848, 973, 1202
Alw26I	GTCTC	2 cut(s)	384, 886
Alw44I	GTGCAC	1 cut(s)	969
AlwI	GGATC	4 cut(s)	191, 598, 611, 1281
AlwNI	CAGNNNCTG	2 cut(s)	466, 982
Ama87I	CYCGRG	1 cut(s)	657
AoxI	GGCC	4 cut(s)	382, 672, 1235, 1250
ApaLI	GTGCAC	1 cut(s)	969
ApeKI	GCWGC	7 cut(s)	457, 460, 463, 481, 499, 1183, 1282
ApoI	RAATTY	1 cut(s)	1713
AspLEI	GCGC	4 cut(s)	283, 428, 1664, 1813
AsuC2I	CCSGG	9 cut(s)	416, 521, 580, 639, 658, 659, 689, 741, 834
AsuHPI	GGTGA	4 cut(s)	517, 767, 1564, 1742
AvaI	CYCGRG	1 cut(s)	657
BaeGI	GKGCMC	1 cut(s)	973
BamHI	GGATCC	1 cut(s)	603
BanII	GRGCYC	6 cut(s)	53, 153, 324, 702, 848, 1202
BauI	CACGAG	1 cut(s)	1696
BbsI	GAAGAC	1 cut(s)	581
Bbv12I	GWGCWC	5 cut(s)	324, 687, 848, 973, 1202
BbvI	GCAGC	7 cut(s)	469, 472, 475, 493, 511, 1195, 1294
BccI	CCATC	6 cut(s)	14, 1088, 1186, 1721, 1758, 1909
BceAI	ACGGC	5 cut(s)	369, 379, 415, 1222, 1527
BcgI	CGANNNNNNTGC	2 cut(s)	890, 924
BciVI	GTATCC	1 cut(s)	789
BclI	TGATCA	3 cut(s)	1330, 1483, 1936
BcnI	CCSGG	9 cut(s)	416, 521, 580, 639, 658, 659, 689, 741, 834
BcoDI	GTCTC	2 cut(s)	384, 886
BfaI	CTAG	1 cut(s)	110
BfoI	RGCGCY	1 cut(s)	1665
BfrI	CTTAAG	1 cut(s)	1208
BfuAI	ACCTGC	2 cut(s)	675, 1375
BfuI	GTATCC	1 cut(s)	789
BglII	AGATCT	1 cut(s)	1794
Bme1390I	CCNGG	9 cut(s)	416, 521, 580, 639, 658, 659, 689, 741, 834
BmeRI	GACNNNNNGTC	1 cut(s)	418
BmeT110I	CYCGRG	1 cut(s)	657
BmgBI	CACGTC	1 cut(s)	292
BmrFI	CCNGG	9 cut(s)	416, 521, 580, 639, 658, 659, 689, 741, 834
BmsI	GCATC	3 cut(s)	573, 898, 1315
BpiI	GAAGAC	1 cut(s)	581
BplI	GAGNNNNNCTC	4 cut(s)	1677, 1709, 1888, 1920
BpmI	CTGGAG	1 cut(s)	1004
BpuEI	CTTGAG	1 cut(s)	116
BpuMI	CCSGG	9 cut(s)	416, 521, 580, 639, 658, 659, 689, 741, 834
BsaBI	GATNNNNATC	2 cut(s)	602, 1329
BsaHI	GRCGYC	1 cut(s)	402
BsaJI	CCNNGG	9 cut(s)	45, 385, 438, 657, 658, 694, 833, 1253, 1722
BsaWI	WCCGGW	1 cut(s)	1300
BsaXI	ACNNNNNCTCC	4 cut(s)	281, 311, 735, 765
Bsc4I	CCNNNNNNNGG	8 cut(s)	316, 422, 613, 644, 687, 982, 1193, 1840
Bse118I	RCCGGY	1 cut(s)	1658
Bse1I	ACTGG	2 cut(s)	1414, 1602
Bse3DI	GCAATG	3 cut(s)	971, 1857, 1983
Bse8I	GATNNNNATC	2 cut(s)	602, 1329
BseDI	CCNNGG	9 cut(s)	45, 385, 438, 657, 658, 694, 833, 1253, 1722
BseGI	GGATG	4 cut(s)	588, 913, 1732, 1861
BseJI	GATNNNNATC	2 cut(s)	602, 1329
BseLI	CCNNNNNNNGG	8 cut(s)	316, 422, 613, 644, 687, 982, 1193, 1840
BseMI	GCAATG	3 cut(s)	971, 1857, 1983
BseMII	CTCAG	6 cut(s)	547, 1179, 1209, 1493, 1805, 1988
BseNI	ACTGG	2 cut(s)	1414, 1602
BseRI	GAGGAG	5 cut(s)	47, 458, 635, 1024, 1983
BseSI	GKGCMC	1 cut(s)	973
BseX3I	CGGCCG	1 cut(s)	382
BseXI	GCAGC	7 cut(s)	469, 472, 475, 493, 511, 1195, 1294
BseYI	CCCAGC	4 cut(s)	175, 200, 206, 911
BsgI	GTGCAG	2 cut(s)	500, 1940
Bsh1236I	CGCG	4 cut(s)	281, 341, 428, 1813
Bsh1285I	CGRYCG	3 cut(s)	270, 385, 506
BshFI	GGCC	4 cut(s)	384, 674, 1237, 1252
BsiEI	CGRYCG	3 cut(s)	270, 385, 506
BsiHKAI	GWGCWC	5 cut(s)	324, 687, 848, 973, 1202
BsiHKCI	CYCGRG	1 cut(s)	657
BslFI	GGGAC	4 cut(s)	80, 122, 704, 1546
BslI	CCNNNNNNNGG	8 cut(s)	316, 422, 613, 644, 687, 982, 1193, 1840
BsmAI	GTCTC	2 cut(s)	384, 886
BsmBI	CGTCTC	2 cut(s)	384, 886
BsmFI	GGGAC	4 cut(s)	80, 122, 704, 1546
BsnI	GGCC	4 cut(s)	384, 674, 1237, 1252
BsoBI	CYCGRG	1 cut(s)	657
Bsp1286I	GDGCHC	8 cut(s)	53, 153, 324, 687, 702, 848, 973, 1202
Bsp19I	CCATGG	2 cut(s)	45, 1722
Bsp68I	TCGCGA	1 cut(s)	341
BspANI	GGCC	4 cut(s)	384, 674, 1237, 1252
BspCNI	CTCAG	6 cut(s)	546, 1180, 1210, 1494, 1804, 1989
BspFNI	CGCG	4 cut(s)	281, 341, 428, 1813
BspMI	ACCTGC	2 cut(s)	675, 1375
BspPI	GGATC	4 cut(s)	191, 598, 611, 1281
BspQI	GCTCTTC	1 cut(s)	329
BspTI	CTTAAG	1 cut(s)	1208
BsrDI	GCAATG	3 cut(s)	971, 1857, 1983
BsrFI	RCCGGY	1 cut(s)	1658
BsrI	ACTGG	2 cut(s)	1414, 1602
BssAI	RCCGGY	1 cut(s)	1658
BssECI	CCNNGG	9 cut(s)	45, 385, 438, 657, 658, 694, 833, 1253, 1722
BssNAI	GTATAC	1 cut(s)	1680
BssNI	GRCGYC	1 cut(s)	402
BssSI	CACGAG	1 cut(s)	1696
BssT1I	CCWWGG	2 cut(s)	45, 1722
Bst1107I	GTATAC	1 cut(s)	1680
Bst2BI	CACGAG	1 cut(s)	1696
Bst4CI	ACNGT	3 cut(s)	695, 713, 1430
Bst6I	CTCTTC	2 cut(s)	329, 767
BstACI	GRCGYC	1 cut(s)	402
BstAFI	CTTAAG	1 cut(s)	1208
BstC8I	GCNNGC	4 cut(s)	468, 672, 1660, 1707
BstDEI	CTNAG	9 cut(s)	533, 1188, 1218, 1226, 1265, 1358, 1502, 1791, 1997
BstDSI	CCRYGG	5 cut(s)	45, 385, 438, 694, 1722
BstEII	GGTNACC	2 cut(s)	523, 755
BstF5I	GGATG	4 cut(s)	588, 913, 1732, 1861
BstFNI	CGCG	4 cut(s)	281, 341, 428, 1813
BstH2I	RGCGCY	1 cut(s)	1665
BstHHI	GCGC	4 cut(s)	283, 428, 1664, 1813
BstMAI	GTCTC	2 cut(s)	384, 886
BstMCI	CGRYCG	3 cut(s)	270, 385, 506
BstMWI	GCNNNNNNNGC	6 cut(s)	366, 372, 375, 378, 381, 463
BstNSI	RCATGY	1 cut(s)	1658
BstPI	GGTNACC	2 cut(s)	523, 755
BstSCI	CCNGG	9 cut(s)	414, 519, 578, 637, 656, 657, 687, 739, 832
BstSLI	GKGCMC	1 cut(s)	973
BstUI	CGCG	4 cut(s)	281, 341, 428, 1813
BstV1I	GCAGC	7 cut(s)	469, 472, 475, 493, 511, 1195, 1294
BstV2I	GAAGAC	1 cut(s)	581
BstX2I	RGATCY	3 cut(s)	603, 1273, 1794
BstYI	RGATCY	3 cut(s)	603, 1273, 1794
BstZ17I	GTATAC	1 cut(s)	1680
BstZI	CGGCCG	1 cut(s)	382
BsuI	GTATCC	1 cut(s)	789
BsuRI	GGCC	4 cut(s)	384, 674, 1237, 1252
BtgI	CCRYGG	5 cut(s)	45, 385, 438, 694, 1722
BtrI	CACGTC	1 cut(s)	292
BtsCI	GGATG	4 cut(s)	588, 913, 1732, 1861
BtsI	GCAGTG	1 cut(s)	1562
BtsIMutI	CAGTG	1 cut(s)	1562
BtuMI	TCGCGA	1 cut(s)	341
BveI	ACCTGC	2 cut(s)	675, 1375
Cac8I	GCNNGC	4 cut(s)	468, 672, 1660, 1707
CaiI	CAGNNNCTG	2 cut(s)	466, 982
CfoI	GCGC	4 cut(s)	283, 428, 1664, 1813
Cfr10I	RCCGGY	1 cut(s)	1658
Cfr9I	CCCGGG	1 cut(s)	657
CseI	GACGC	2 cut(s)	391, 1802
Csp6I	GTAC	3 cut(s)	493, 892, 1899
CviAII	CATG	8 cut(s)	46, 775, 938, 1061, 1382, 1580, 1655, 1723
CviQI	GTAC	3 cut(s)	493, 892, 1899
DdeI	CTNAG	9 cut(s)	533, 1188, 1218, 1226, 1265, 1358, 1502, 1791, 1997
DriI	GACNNNNNGTC	1 cut(s)	418
EaeI	YGGCCR	1 cut(s)	382
EagI	CGGCCG	1 cut(s)	382
Eam1104I	CTCTTC	2 cut(s)	329, 767
Eam1105I	GACNNNNNGTC	1 cut(s)	418
EarI	CTCTTC	2 cut(s)	329, 767
EciI	GGCGGA	2 cut(s)	485, 632
Ecl136II	GAGCTC	3 cut(s)	322, 846, 1200
EclXI	CGGCCG	1 cut(s)	382
Eco130I	CCWWGG	2 cut(s)	45, 1722
Eco24I	GRGCYC	6 cut(s)	53, 153, 324, 702, 848, 1202
Eco52I	CGGCCG	1 cut(s)	382
Eco53kI	GAGCTC	3 cut(s)	322, 846, 1200
Eco88I	CYCGRG	1 cut(s)	657
Eco91I	GGTNACC	2 cut(s)	523, 755
EcoICRI	GAGCTC	3 cut(s)	322, 846, 1200
EcoO109I	RGGNCCY	3 cut(s)	136, 1336, 1533
EcoO65I	GGTNACC	2 cut(s)	523, 755
EcoT14I	CCWWGG	2 cut(s)	45, 1722
EcoT22I	ATGCAT	1 cut(s)	1020
EcoT38I	GRGCYC	6 cut(s)	53, 153, 324, 702, 848, 1202
ErhI	CCWWGG	2 cut(s)	45, 1722
Esp3I	CGTCTC	2 cut(s)	384, 886
FaeI	CATG	8 cut(s)	49, 778, 941, 1064, 1385, 1583, 1658, 1726
FaqI	GGGAC	4 cut(s)	80, 122, 704, 1546
FatI	CATG	8 cut(s)	45, 774, 937, 1060, 1381, 1579, 1654, 1722
FauI	CCCGC	4 cut(s)	504, 663, 881, 1560
FbaI	TGATCA	3 cut(s)	1330, 1483, 1936
FblI	GTMKAC	2 cut(s)	294, 1679
FokI	GGATG	4 cut(s)	595, 920, 1739, 1868
FriOI	GRGCYC	6 cut(s)	53, 153, 324, 702, 848, 1202
FspBI	CTAG	1 cut(s)	110
GlaI	GCGC	4 cut(s)	282, 427, 1663, 1812
GsaI	CCCAGC	4 cut(s)	179, 204, 210, 915
GsuI	CTGGAG	1 cut(s)	1004
HaeII	RGCGCY	1 cut(s)	1665
HaeIII	GGCC	4 cut(s)	384, 674, 1237, 1252
HgaI	GACGC	2 cut(s)	391, 1802
HhaI	GCGC	4 cut(s)	283, 428, 1664, 1813
Hin1I	GRCGYC	1 cut(s)	402
Hin1II	CATG	8 cut(s)	49, 778, 941, 1064, 1385, 1583, 1658, 1726
Hin6I	GCGC	4 cut(s)	281, 426, 1662, 1811
HinP1I	GCGC	4 cut(s)	281, 426, 1662, 1811
HincII	GTYRAC	1 cut(s)	1426
HindII	GTYRAC	1 cut(s)	1426
HindIII	AAGCTT	1 cut(s)	1163
HpaI	GTTAAC	1 cut(s)	1426
HphI	GGTGA	4 cut(s)	517, 767, 1564, 1742
Hpy166II	GTNNAC	4 cut(s)	295, 971, 1426, 1680
Hpy188III	TCNNGA	8 cut(s)	68, 340, 410, 571, 1112, 1334, 1696, 1802
Hpy8I	GTNNAC	4 cut(s)	295, 971, 1426, 1680
Hpy99I	CGWCG	6 cut(s)	173, 275, 365, 407, 542, 871
HpyAV	CCTTC	3 cut(s)	202, 346, 1546
HpyCH4III	ACNGT	3 cut(s)	695, 713, 1430
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	7 cut(s)	481, 971, 1018, 1370, 1850, 1921, 1976
HpyF10VI	GCNNNNNNNGC	6 cut(s)	366, 372, 375, 378, 381, 463
HpyF3I	CTNAG	9 cut(s)	533, 1188, 1218, 1226, 1265, 1358, 1502, 1791, 1997
HpySE526I	ACGT	1 cut(s)	291
Hsp92I	GRCGYC	1 cut(s)	402
Hsp92II	CATG	8 cut(s)	49, 778, 941, 1064, 1385, 1583, 1658, 1726
HspAI	GCGC	4 cut(s)	281, 426, 1662, 1811
KroI	GCCGGC	1 cut(s)	1658
KroNI	GCCGGC	1 cut(s)	1660
Ksp22I	TGATCA	3 cut(s)	1330, 1483, 1936
KspAI	GTTAAC	1 cut(s)	1426
LguI	GCTCTTC	1 cut(s)	329
Lsp1109I	GCAGC	7 cut(s)	469, 472, 475, 493, 511, 1195, 1294
LweI	GCATC	3 cut(s)	573, 898, 1315
MaeI	CTAG	1 cut(s)	110
MaeII	ACGT	1 cut(s)	291
MaeIII	GTNAC	4 cut(s)	523, 755, 1570, 2063
MflI	RGATCY	3 cut(s)	603, 1273, 1794
MhlI	GDGCHC	8 cut(s)	53, 153, 324, 687, 702, 848, 973, 1202
MluCI	AATT	5 cut(s)	63, 100, 819, 1441, 1713
MlyI	GAGTC	3 cut(s)	428, 753, 1231
MmeI	TCCRAC	4 cut(s)	237, 984, 1400, 1841
Mph1103I	ATGCAT	1 cut(s)	1020
MroNI	GCCGGC	1 cut(s)	1658
MseI	TTAA	5 cut(s)	957, 1161, 1209, 1425, 2006
MspA1I	CMGCKG	4 cut(s)	466, 484, 502, 1840
MspCI	CTTAAG	1 cut(s)	1208
MspR9I	CCNGG	9 cut(s)	416, 521, 580, 639, 658, 659, 689, 741, 834
MvnI	CGCG	4 cut(s)	281, 341, 428, 1813
MwoI	GCNNNNNNNGC	6 cut(s)	366, 372, 375, 378, 381, 463
NaeI	GCCGGC	1 cut(s)	1660
NciI	CCSGG	9 cut(s)	416, 521, 580, 639, 658, 659, 689, 741, 834
NcoI	CCATGG	2 cut(s)	45, 1722
NgoMIV	GCCGGC	1 cut(s)	1658
NlaIII	CATG	8 cut(s)	49, 778, 941, 1064, 1385, 1583, 1658, 1726
NmeAIII	GCCGAG	1 cut(s)	1278
NmuCI	GTSAC	3 cut(s)	523, 755, 1570
NruI	TCGCGA	1 cut(s)	341
NsiI	ATGCAT	1 cut(s)	1020
NspI	RCATGY	1 cut(s)	1658
PaqCI	CACCTGC	1 cut(s)	1375
PciSI	GCTCTTC	1 cut(s)	329
PcsI	WCGNNNNNNNCGW	2 cut(s)	297, 399
PdiI	GCCGGC	1 cut(s)	1660
PfeI	GAWTC	8 cut(s)	349, 593, 598, 634, 1057, 1108, 1173, 1297
PflFI	GACNNNGTC	2 cut(s)	290, 401
PflMI	CCANNNNNTGG	1 cut(s)	982
PfoI	TCCNGGA	2 cut(s)	687, 739
Ple19I	CGATCG	1 cut(s)	270
PleI	GAGTC	3 cut(s)	427, 752, 1230
PpsI	GAGTC	3 cut(s)	427, 752, 1230
PpuMI	RGGWCCY	3 cut(s)	136, 1336, 1533
PsiI	TTATAA	1 cut(s)	1155
Psp124BI	GAGCTC	3 cut(s)	324, 848, 1202
Psp5II	RGGWCCY	3 cut(s)	136, 1336, 1533
PspEI	GGTNACC	2 cut(s)	523, 755
PspFI	CCCAGC	4 cut(s)	175, 200, 206, 911
PspPPI	RGGWCCY	3 cut(s)	136, 1336, 1533
PstNI	CAGNNNCTG	2 cut(s)	466, 982
PsuI	RGATCY	3 cut(s)	603, 1273, 1794
PsyI	GACNNNGTC	2 cut(s)	290, 401
PvuI	CGATCG	1 cut(s)	270
PvuII	CAGCTG	1 cut(s)	466
RruI	TCGCGA	1 cut(s)	341
RsaI	GTAC	3 cut(s)	494, 893, 1900
RsaNI	GTAC	3 cut(s)	493, 892, 1899
SacI	GAGCTC	3 cut(s)	324, 848, 1202
SapI	GCTCTTC	1 cut(s)	329
SaqAI	TTAA	5 cut(s)	957, 1161, 1209, 1425, 2006
SchI	GAGTC	3 cut(s)	428, 753, 1231
ScrFI	CCNGG	9 cut(s)	416, 521, 580, 639, 658, 659, 689, 741, 834
SduI	GDGCHC	8 cut(s)	53, 153, 324, 687, 702, 848, 973, 1202
SfaNI	GCATC	3 cut(s)	573, 898, 1315
SmaI	CCCGGG	1 cut(s)	659
SmlI	CTYRAG	2 cut(s)	131, 1208
SmoI	CTYRAG	2 cut(s)	131, 1208
Sse9I	AATT	5 cut(s)	63, 100, 819, 1441, 1713
SspMI	CTAG	1 cut(s)	110
SstI	GAGCTC	3 cut(s)	324, 848, 1202
StyD4I	CCNGG	9 cut(s)	414, 519, 578, 637, 656, 657, 687, 739, 832
StyI	CCWWGG	2 cut(s)	45, 1722
TaaI	ACNGT	3 cut(s)	695, 713, 1430
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	9 cut(s)	147, 195, 266, 506, 596, 848, 1073, 1176, 1561
TasI	AATT	5 cut(s)	63, 100, 819, 1441, 1713
TauI	GCSGC	9 cut(s)	278, 281, 369, 372, 375, 378, 381, 384, 677
TfiI	GAWTC	8 cut(s)	349, 593, 598, 634, 1057, 1108, 1173, 1297
Tru1I	TTAA	5 cut(s)	957, 1161, 1209, 1425, 2006
Tru9I	TTAA	5 cut(s)	957, 1161, 1209, 1425, 2006
TscAI	CASTG	1 cut(s)	1562
TseFI	GTSAC	3 cut(s)	523, 755, 1570
TseI	GCWGC	7 cut(s)	457, 460, 463, 481, 499, 1183, 1282
Tsp45I	GTSAC	3 cut(s)	523, 755, 1570
TspDTI	ATGAA	4 cut(s)	1049, 1452, 1472, 2052
TspGWI	ACGGA	6 cut(s)	82, 548, 667, 670, 816, 1192
TspMI	CCCGGG	1 cut(s)	657
TspRI	CASTG	1 cut(s)	1562
Tth111I	GACNNNGTC	2 cut(s)	290, 401
Van91I	CCANNNNNTGG	1 cut(s)	982
Vha464I	CTTAAG	1 cut(s)	1208
VneI	GTGCAC	1 cut(s)	969
XapI	RAATTY	1 cut(s)	1713
XceI	RCATGY	1 cut(s)	1658
XmaI	CCCGGG	1 cut(s)	657
XmiI	GTMKAC	2 cut(s)	294, 1679
XspI	CTAG	1 cut(s)	110
Zsp2I	ATGCAT	1 cut(s)	1020

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.