Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0009622

Physical Location & Seq

Genomic Coordinates Reverse (-)

43356400 .. 43361258

Gene Structure 4859 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0353200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGAATACGAAATTGGTGCACCAGGTAAAGCCTACACTGATTGGGCAGTTCAAATGGTTGTGGGAACACTAGTTTCCCCTGGGTCCTGTGCAAACAAGATGATGCCCCTGATCCTGTTGCTTATAAACCAAAGATGTGGACTAAAGCCTAGACTGGATGGTTTACTGAGATATATTGGAGGTGCAGTTCCTTACCGACCAGCTGAGGGTTTGGCATTTTCAGTTGCGAAGTTTATACAAAAGGGTGGATCATTCATTAACTATTACATGGTAAGTACCATGGAGGAACAAATTTTGGGCAAACTGCTAGCTGGTGGTCTTTTCATCGCTGCTAGTTATGATTACGATGCTCCTATGGATGAATATGGAATGTTGGGGCAACCTAAATGGGGCCATTTGAAAAGAGAGAGGCATTCAATGCTAGAAGGTGATGGAACAAATGGAAAGCTTCCTTTGCAACCTATTATATACTTCCAAGAATACAAGGATGCTAGTAAGACTTCATTCAAGTCCTCAACTCGGTTAGTATATGATGCAAGACTACCCAAAAACTTGGGAAGATCAGAGATGCTCAAGCTTCAATCAAATTTTGTACAATGCGAGAAAACTTGCGAGGAGCTAAGGGAGTTTGGGAAAACTGAAGATGATTTGAAGTCACTTCAAAGTGCTGGTCAAATGAACCCTGAGCTCTTCCTTAGAGTGGGCATCAAACCACCCAAGGCATGTTTTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000775 GO:0000785 GO:0000790 GO:0000792 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005720 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008276 GO:0009292 GO:0009294 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0019222 GO:0019538 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0034641 GO:0036211 GO:0040029 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044728 GO:0044764 GO:0046483 GO:0048519 GO:0050789 GO:0051276 GO:0051704 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080188 GO:0090304 GO:0098687 GO:0140096 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

244

Amino Acids

27.24

Weight (kDa)

8.68

Isoelectric Point (pI)

43.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_35	PF01301	53 - 135	7.3e-09	Glycosyl hydrolases family 35

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009622)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13460 AT4G13460
fragaria_vesca	FvH4_2g20121
malus_domestica	MD13G1224000.v1.1 MD16G1228800.v1.1
prunus_persica	Prupe.1G050800_v2.0.a1 Prupe.1G050800_v2.0.a1 Prupe.1G050800_v2.0.a1 Prupe.1G050800_v2.0.a1
pyrus_communis	pycom13g19790
rosa_chinensis	RchiOBHm_Chr4g0395951
rosa_laevigata	RLG00000009586
rosa_multiflora	Rmu_sc0001103.1_g000009
rosa_roxburghii	Rroxscaffold_5G00340700
rosa_rugosa	Rorug03G0353200 Rorug03G0353300
rosa_samantha	Rh4AG063100 Rh4AG064100 Rh4BG062900 Rh4CG069200 Rh4DG059100
rosa_wichuraiana	Rw4G005180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	125
AclWI	GGATC	2 cut(s)	106, 256
AcsI	RAATTY	2 cut(s)	291, 586
AcuI	CTGAAG	1 cut(s)	660
AfaI	GTAC	2 cut(s)	277, 594
AfiI	CCNNNNNNNGG	4 cut(s)	206, 389, 519, 700
AgsI	TTSAA	7 cut(s)	53, 400, 417, 508, 581, 652, 662
AhlI	ACTAGT	1 cut(s)	70
AjnI	CCWGG	2 cut(s)	22, 79
AjuI	GAANNNNNNNTTGG	1 cut(s)	29
AloI	GAACNNNNNNTCC	2 cut(s)	171, 203
AluBI	AGCT	6 cut(s)	203, 311, 448, 577, 619, 688
AluI	AGCT	6 cut(s)	203, 311, 448, 577, 619, 688
Alw21I	GWGCWC	2 cut(s)	22, 690
Alw44I	GTGCAC	1 cut(s)	18
AlwI	GGATC	2 cut(s)	106, 256
AoxI	GGCC	1 cut(s)	391
ApaLI	GTGCAC	1 cut(s)	18
ApeKI	GCWGC	1 cut(s)	329
ApoI	RAATTY	2 cut(s)	291, 586
ArsI	GACNNNNNNTTYG	2 cut(s)	655, 687
AspS9I	GGNCC	2 cut(s)	84, 391
AsuHPI	GGTGA	1 cut(s)	440
AsuNHI	GCTAGC	1 cut(s)	307
AvaII	GGWCC	1 cut(s)	84
BaeGI	GKGCMC	1 cut(s)	22
BanII	GRGCYC	1 cut(s)	690
Bbv12I	GWGCWC	2 cut(s)	22, 690
BbvCI	CCTCAGC	1 cut(s)	204
BbvI	GCAGC	1 cut(s)	316
BccI	CCATC	2 cut(s)	152, 425
BcgI	CGANNNNNNTGC	1 cut(s)	33
BciT130I	CCWGG	2 cut(s)	24, 81
BcuI	ACTAGT	1 cut(s)	70
BfaI	CTAG	6 cut(s)	71, 150, 308, 333, 422, 492
BisI	GCNGC	1 cut(s)	330
BlsI	GCNGC	1 cut(s)	331
Bme1390I	CCNGG	2 cut(s)	24, 81
Bme18I	GGWCC	1 cut(s)	84
BmgT120I	GGNCC	2 cut(s)	84, 391
BmiI	GGNNCC	2 cut(s)	85, 392
BmrFI	CCNGG	2 cut(s)	24, 81
BmsI	GCATC	6 cut(s)	93, 337, 478, 523, 558, 714
BmtI	GCTAGC	1 cut(s)	311
Bpu10I	CCTNAGC	3 cut(s)	204, 620, 684
BpuEI	CTTGAG	1 cut(s)	557
BsaJI	CCNNGG	4 cut(s)	79, 80, 279, 717
BsaXI	ACNNNNNCTCC	2 cut(s)	171, 201
Bsc4I	CCNNNNNNNGG	4 cut(s)	206, 389, 519, 700
Bse1I	ACTGG	1 cut(s)	159
BseBI	CCWGG	2 cut(s)	24, 81
BseDI	CCNNGG	4 cut(s)	79, 80, 279, 717
BseGI	GGATG	3 cut(s)	163, 364, 493
BseLI	CCNNNNNNNGG	4 cut(s)	206, 389, 519, 700
BseMII	CTCAG	3 cut(s)	158, 195, 675
BseNI	ACTGG	1 cut(s)	159
BseRI	GAGGAG	1 cut(s)	629
BseSI	GKGCMC	1 cut(s)	22
BseXI	GCAGC	1 cut(s)	316
BsgI	GTGCAG	1 cut(s)	204
BshFI	GGCC	1 cut(s)	393
BsiHKAI	GWGCWC	2 cut(s)	22, 690
BslI	CCNNNNNNNGG	4 cut(s)	206, 389, 519, 700
BsmI	GAATGC	1 cut(s)	412
BsnI	GGCC	1 cut(s)	393
Bsp1286I	GDGCHC	2 cut(s)	22, 690
Bsp1407I	TGTACA	1 cut(s)	592
Bsp143I	GATC	3 cut(s)	111, 248, 560
Bsp19I	CCATGG	1 cut(s)	279
BspANI	GGCC	1 cut(s)	393
BspCNI	CTCAG	3 cut(s)	159, 196, 676
BspLI	GGNNCC	2 cut(s)	85, 392
BspOI	GCTAGC	1 cut(s)	311
BspPI	GGATC	2 cut(s)	106, 256
BspQI	GCTCTTC	1 cut(s)	695
BsrGI	TGTACA	1 cut(s)	592
BsrI	ACTGG	1 cut(s)	159
BssECI	CCNNGG	4 cut(s)	79, 80, 279, 717
BssMI	GATC	3 cut(s)	111, 248, 560
BssT1I	CCWWGG	2 cut(s)	279, 717
Bst2UI	CCWGG	2 cut(s)	24, 81
Bst6I	CTCTTC	1 cut(s)	695
BstAPI	GCANNNNNTGC	1 cut(s)	418
BstAUI	TGTACA	1 cut(s)	592
BstC8I	GCNNGC	1 cut(s)	309
BstDEI	CTNAG	5 cut(s)	167, 204, 620, 684, 695
BstDSI	CCRYGG	1 cut(s)	279
BstF5I	GGATG	3 cut(s)	163, 364, 493
BstKTI	GATC	3 cut(s)	114, 251, 563
BstMBI	GATC	3 cut(s)	111, 248, 560
BstMWI	GCNNNNNNNGC	2 cut(s)	418, 454
BstNI	CCWGG	2 cut(s)	24, 81
BstNSI	RCATGY	1 cut(s)	726
BstSCI	CCNGG	2 cut(s)	22, 79
BstSLI	GKGCMC	1 cut(s)	22
BstV1I	GCAGC	1 cut(s)	316
BstXI	CCANNNNNNTGG	2 cut(s)	137, 553
BsuRI	GGCC	1 cut(s)	393
BtgI	CCRYGG	1 cut(s)	279
BtgZI	GCGATG	1 cut(s)	310
BtsCI	GGATG	3 cut(s)	163, 364, 493
BtsIMutI	CAGTG	1 cut(s)	36
Cac8I	GCNNGC	1 cut(s)	309
Cfr13I	GGNCC	2 cut(s)	84, 391
CsiI	ACCWGGT	1 cut(s)	22
Csp6I	GTAC	2 cut(s)	276, 593
CviAII	CATG	3 cut(s)	268, 280, 723
CviJI	RGCY	9 cut(s)	32, 148, 203, 311, 393, 448, 577, 619, 688
CviKI_1	RGCY	9 cut(s)	32, 148, 203, 311, 393, 448, 577, 619, 688
CviQI	GTAC	2 cut(s)	276, 593
DdeI	CTNAG	5 cut(s)	167, 204, 620, 684, 695
DpnI	GATC	3 cut(s)	113, 250, 562
DpnII	GATC	3 cut(s)	111, 248, 560
Eam1104I	CTCTTC	1 cut(s)	695
EarI	CTCTTC	1 cut(s)	695
Ecl136II	GAGCTC	1 cut(s)	688
Eco130I	CCWWGG	2 cut(s)	279, 717
Eco24I	GRGCYC	1 cut(s)	690
Eco47I	GGWCC	1 cut(s)	84
Eco53kI	GAGCTC	1 cut(s)	688
Eco57I	CTGAAG	1 cut(s)	660
EcoICRI	GAGCTC	1 cut(s)	688
EcoO109I	RGGNCCY	1 cut(s)	84
EcoRII	CCWGG	2 cut(s)	22, 79
EcoT14I	CCWWGG	2 cut(s)	279, 717
EcoT38I	GRGCYC	1 cut(s)	690
ErhI	CCWWGG	2 cut(s)	279, 717
FaeI	CATG	3 cut(s)	271, 283, 726
FatI	CATG	3 cut(s)	267, 279, 722
Fnu4HI	GCNGC	1 cut(s)	330
FokI	GGATG	3 cut(s)	170, 371, 500
FriOI	GRGCYC	1 cut(s)	690
Fsp4HI	GCNGC	1 cut(s)	330
FspBI	CTAG	6 cut(s)	71, 150, 308, 333, 422, 492
GluI	GCNGC	1 cut(s)	330
HaeIII	GGCC	1 cut(s)	393
Hin1II	CATG	3 cut(s)	271, 283, 726
HindIII	AAGCTT	2 cut(s)	446, 575
HphI	GGTGA	1 cut(s)	440
Hpy166II	GTNNAC	3 cut(s)	20, 140, 164
Hpy188I	TCNGA	1 cut(s)	565
Hpy8I	GTNNAC	3 cut(s)	20, 140, 164
HpyAV	CCTTC	1 cut(s)	419
HpyCH4V	TGCA	5 cut(s)	20, 92, 185, 457, 536
HpyF10VI	GCNNNNNNNGC	2 cut(s)	418, 454
HpyF3I	CTNAG	5 cut(s)	167, 204, 620, 684, 695
Hsp92II	CATG	3 cut(s)	271, 283, 726
Kzo9I	GATC	3 cut(s)	111, 248, 560
LguI	GCTCTTC	1 cut(s)	695
LmnI	GCTCC	2 cut(s)	355, 616
Lsp1109I	GCAGC	1 cut(s)	316
LweI	GCATC	6 cut(s)	93, 337, 478, 523, 558, 714
MabI	ACCWGGT	1 cut(s)	22
MaeI	CTAG	6 cut(s)	71, 150, 308, 333, 422, 492
MaeIII	GTNAC	1 cut(s)	654
MalI	GATC	3 cut(s)	113, 250, 562
MboI	GATC	3 cut(s)	111, 248, 560
MboII	GAAGA	3 cut(s)	570, 653, 682
MhlI	GDGCHC	2 cut(s)	22, 690
MluCI	AATT	3 cut(s)	12, 291, 586
MnlI	CCTC	6 cut(s)	173, 199, 277, 402, 523, 607
MseI	TTAA	1 cut(s)	258
MspA1I	CMGCKG	1 cut(s)	203
MspR9I	CCNGG	2 cut(s)	24, 81
Mva1269I	GAATGC	1 cut(s)	412
MvaI	CCWGG	2 cut(s)	24, 81
MwoI	GCNNNNNNNGC	2 cut(s)	418, 454
NcoI	CCATGG	1 cut(s)	279
NdeII	GATC	3 cut(s)	111, 248, 560
NheI	GCTAGC	1 cut(s)	307
NlaIII	CATG	3 cut(s)	271, 283, 726
NlaIV	GGNNCC	2 cut(s)	85, 392
NmuCI	GTSAC	1 cut(s)	654
NspI	RCATGY	1 cut(s)	726
PasI	CCCWGGG	1 cut(s)	80
PciSI	GCTCTTC	1 cut(s)	695
PctI	GAATGC	1 cut(s)	412
PkrI	GCNGC	1 cut(s)	331
PpuMI	RGGWCCY	1 cut(s)	84
PsiI	TTATAA	1 cut(s)	125
Psp124BI	GAGCTC	1 cut(s)	690
Psp5II	RGGWCCY	1 cut(s)	84
Psp6I	CCWGG	2 cut(s)	22, 79
PspGI	CCWGG	2 cut(s)	22, 79
PspN4I	GGNNCC	2 cut(s)	85, 392
PspPI	GGNCC	2 cut(s)	84, 391
PspPPI	RGGWCCY	1 cut(s)	84
PvuII	CAGCTG	1 cut(s)	203
RsaI	GTAC	2 cut(s)	277, 594
RsaNI	GTAC	2 cut(s)	276, 593
SacI	GAGCTC	1 cut(s)	690
SapI	GCTCTTC	1 cut(s)	695
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	1 cut(s)	330
Sau3AI	GATC	3 cut(s)	111, 248, 560
Sau96I	GGNCC	2 cut(s)	84, 391
ScrFI	CCNGG	2 cut(s)	24, 81
SduI	GDGCHC	2 cut(s)	22, 690
SexAI	ACCWGGT	1 cut(s)	22
SfaNI	GCATC	6 cut(s)	93, 337, 478, 523, 558, 714
SinI	GGWCC	1 cut(s)	84
SmlI	CTYRAG	1 cut(s)	572
SmoI	CTYRAG	1 cut(s)	572
SpeI	ACTAGT	1 cut(s)	70
Sse9I	AATT	3 cut(s)	12, 291, 586
SspMI	CTAG	6 cut(s)	71, 150, 308, 333, 422, 492
SstI	GAGCTC	1 cut(s)	690
StyD4I	CCNGG	2 cut(s)	22, 79
StyI	CCWWGG	2 cut(s)	279, 717
TasI	AATT	3 cut(s)	12, 291, 586
TatI	WGTACW	1 cut(s)	592
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	1 cut(s)	43
TseFI	GTSAC	1 cut(s)	654
TseI	GCWGC	1 cut(s)	329
Tsp45I	GTSAC	1 cut(s)	654
TspDTI	ATGAA	5 cut(s)	244, 313, 375, 492, 692
TspRI	CASTG	1 cut(s)	43
VneI	GTGCAC	1 cut(s)	18
VpaK11BI	GGWCC	1 cut(s)	84
XapI	RAATTY	2 cut(s)	291, 586
XceI	RCATGY	1 cut(s)	726
XspI	CTAG	6 cut(s)	71, 150, 308, 333, 422, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.