Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009622

Physical Location & Seq

Genomic Coordinates Reverse (-)

11940788 .. 11949103

Gene Structure 8316 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36835

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2025 bp

ATGCCCATCTCTCTTTCTACTCAAACCCACTTCTTTCCTTTGACCATGGGCTCTCTCCTCCCAATTCTTGACCTCAATGCCTCCCCTCAATCCGTCCCCAATTCAACCCTAGCCACCGCCACCATATCCCTCAAGGTCCCCAAAATCGAACCCAAGCCCGAACCTTGCGACGACCCAGCTCCCCAACCCCCCTTCGATCCCAGCCCCAGCTCCGACATTTTCCCCAATCCCCAAACTACCCCTCTCCCCCTCCCCCACCAGACCTCGATCGTCGCCGCCGCGCCGGACCACGTCTACTCCGAGTTCCACCGCATTTCCGAGCTCTTCCACACCGCCTTCGCGAAAGGGATTCAGAACTGCGACGGCGGCGGCCGCGGCGGTGGCGGAGACGAGGACGGCGTCGTTCTGGACCCGGAGTCCGGCGCGATTGTTCCGGTGGAGGACAACAGCCAGCAGCAGCAGCTGGCGGAGGTCGTGCAGCGGAAGAAGTACCCGCAGCGGTCGAACGAGCTCGTCCGGGTCACCGATCTCAGCGACGAGGACCACCGCTACTTCCGTGAGGTCGTCAGGAAGACCCGGATGCTCTACGATTCGATTCGGATCCTCTCGGTGGCGGAGGAGGACAAGAAGAATCCGGGTCAGGGGAAACGGACCCGGGGCGACTTGCGGGCCGCCTCCGTGCTCCGGGACCGTGGCCTCTGGCTCAACCGTGATAAGCGGATTGTGGGGTCCATCCCCGGTGTCTATGTTGGTGACCTCTTCTTCTTTCGCATGGAGCTATGTGTGGTTGGGATACATGGTCAAGTCCAAGCTGGAATTGACTATCTTCCAGGGAGCCAGAGCTCGAATAGGGAGCCGATTGCGACGAGCATTATCGTCTCTGGCGGGTACGAGGATGATGAGGATGCTGGGGATATTATTATCTACACAGGACATGGAGGGCAGGACAAGTTTAATAGGCAATGTGCACACCAGAAGCTGGAGGGTGGGAACTTGGCGTTGGAGAGGAGTATGCATTACGGAATTGAAGTGAGGGTTATTAGGGGGAGGAAGATTCATGGGGCTGTTTCGAGTAAGGTGTATGTTTATGATGGTTTGTATAGGATTCTTGAAACTTGGCTTGATGTTGGGAAGTCGGGGTTTGGTGTTTATAAGTTTAAGCTTTTGAGAATCGAGGGGCAGCCTGAGATGGGGAGCTCCATTCTTAAGTTTGCTGAGAGTCTTAGGAGTAGGCCATTGAGTAGGGAGAAGATTCCGGTGTTGCTTTTCAATGACATTGATGCTGATCAGGACCCCTTGTATTATGAGTATCTTAGGACACCTGCATTTCCAACTCATGTGTATCATCAGTCGGCAAACGGAACTGGCTGTGAATGTGTTAACGGTTGTAATGAAAATTGCTTTTGTGCTATGAAAAATGGAGGGGAGTTTCCTTATGATCAGAATGGGTTTCTTCTGAGGGGGAAGCCTGTGGTATTTGAGTGTGGGACCTTCTGCCGTTGCCCCCCGCAGTGTCGGAATCGTGTCACCCAACATGGATTGAGAAATAGACTGGAAGTGTTTAGATCAAGGGAAACAGGTTGGGGGGTTAGGTCTTTGGACTTGATACATGCTGGCGCTTTTATATGTGAGTATACAGGAGTTATTCTCACGAGGGAGCAGGCTCAAATTTTTTCCATGGATGGTGATAGCTTGATCTATCCCCATCGGTTTTCTGATAAATGGGCAGAATGGGGAGATTTATCTCAGATCTATCCTGATTATGCGCGTCCAACTTATCCGGCAATCCCACCGCTGGATTTTGCAATGGATGTGTCAAAAATGAGGAATGTTGCTTGTTATATGAGCCAGAGTACCACTCCAAATGTGATGGTGCAGTTCGTTCTCTATGATCACAACAACTTGATGTTTCCTCATCTTATGCTATTTGCAATGGAGAACATTCCTCCTCTGAGGGAGTTAAGCCTTGACTATGGGGTGGCGGTGGCTGATGAATGGACAGGGAAACTTGCTATCTGTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000775 GO:0000785 GO:0000790 GO:0000792 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005720 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008276 GO:0009292 GO:0009294 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0019222 GO:0019538 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0034641 GO:0036211 GO:0040029 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044728 GO:0044764 GO:0046483 GO:0048519 GO:0050789 GO:0051276 GO:0051704 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080188 GO:0090304 GO:0098687 GO:0140096 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

674

Amino Acids

75.37

Weight (kDa)

5.81

Isoelectric Point (pI)

45.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAD_SRA	PF02182	242 - 394	3.6e-52	SAD/SRA domain
Pre-SET	PF05033	415 - 508	4.2e-20	Pre-SET motif
SET	PF00856	527 - 659	3.8e-11	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009622)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13460 AT4G13460
fragaria_vesca	FvH4_2g20121
malus_domestica	MD13G1224000.v1.1 MD16G1228800.v1.1
prunus_persica	Prupe.1G050800_v2.0.a1 Prupe.1G050800_v2.0.a1 Prupe.1G050800_v2.0.a1 Prupe.1G050800_v2.0.a1
pyrus_communis	pycom13g19790
rosa_chinensis	RchiOBHm_Chr4g0395951
rosa_laevigata	RLG00000009586
rosa_multiflora	Rmu_sc0001103.1_g000009
rosa_roxburghii	Rroxscaffold_5G00340700
rosa_rugosa	Rorug03G0353200 Rorug03G0353300
rosa_samantha	Rh4AG063100 Rh4AG064100 Rh4BG062900 Rh4CG069200 Rh4DG059100
rosa_wichuraiana	Rw4G005180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1152
AarI	CACCTGC	1 cut(s)	1330
Acc36I	ACCTGC	1 cut(s)	1330
AccB7I	CCANNNNNTGG	1 cut(s)	979
AccI	GTMKAC	2 cut(s)	294, 1634
AccII	CGCG	5 cut(s)	281, 341, 375, 425, 1768
AclWI	GGATC	3 cut(s)	191, 595, 608
AcoI	YGGCCR	1 cut(s)	370
AcsI	RAATTY	1 cut(s)	1668
AcyI	GRCGYC	1 cut(s)	399
AfaI	GTAC	3 cut(s)	491, 890, 1855
AfiI	CCNNNNNNNGG	7 cut(s)	419, 610, 641, 684, 979, 1190, 1795
AflII	CTTAAG	1 cut(s)	1205
AgsI	TTSAA	4 cut(s)	105, 1028, 1112, 1270
AhdI	GACNNNNNGTC	1 cut(s)	415
AjiI	CACGTC	1 cut(s)	292
AjnI	CCWGG	1 cut(s)	829
AjuI	GAANNNNNNNTTGG	2 cut(s)	983, 1015
Alw21I	GWGCWC	6 cut(s)	324, 513, 684, 845, 970, 1199
Alw26I	GTCTC	2 cut(s)	381, 883
Alw44I	GTGCAC	1 cut(s)	966
AlwI	GGATC	3 cut(s)	191, 595, 608
AlwNI	CAGNNNCTG	2 cut(s)	463, 979
Ama87I	CYCGRG	1 cut(s)	654
AoxI	GGCC	4 cut(s)	370, 669, 694, 1232
ApaLI	GTGCAC	1 cut(s)	966
ApeKI	GCWGC	6 cut(s)	454, 457, 460, 478, 496, 1180
ApoI	RAATTY	1 cut(s)	1668
AspLEI	GCGC	4 cut(s)	283, 425, 1619, 1768
AsuC2I	CCSGG	8 cut(s)	413, 518, 577, 636, 655, 656, 686, 738
AsuHPI	GGTGA	4 cut(s)	514, 764, 1519, 1697
AvaI	CYCGRG	1 cut(s)	654
AvaII	GGWCC	9 cut(s)	136, 286, 409, 541, 651, 688, 729, 1291, 1488
BaeGI	GKGCMC	1 cut(s)	970
BamHI	GGATCC	1 cut(s)	600
BanII	GRGCYC	5 cut(s)	53, 324, 513, 845, 1199
BauI	CACGAG	1 cut(s)	1651
BbsI	GAAGAC	1 cut(s)	578
Bbv12I	GWGCWC	6 cut(s)	324, 513, 684, 845, 970, 1199
BbvI	GCAGC	6 cut(s)	466, 469, 472, 490, 508, 1192
BccI	CCATC	7 cut(s)	14, 740, 1085, 1183, 1676, 1713, 1864
BceAI	ACGGC	3 cut(s)	379, 412, 1482
BciT130I	CCWGG	1 cut(s)	831
BciVI	GTATCC	1 cut(s)	786
BclI	TGATCA	3 cut(s)	1285, 1438, 1891
BcnI	CCSGG	8 cut(s)	413, 518, 577, 636, 655, 656, 686, 738
BcoDI	GTCTC	2 cut(s)	381, 883
BfaI	CTAG	1 cut(s)	110
BfoI	RGCGCY	1 cut(s)	1620
BfrI	CTTAAG	1 cut(s)	1205
BfuAI	ACCTGC	1 cut(s)	1330
BfuI	GTATCC	1 cut(s)	786
BglII	AGATCT	1 cut(s)	1749
Bme1390I	CCNGG	9 cut(s)	413, 518, 577, 636, 655, 656, 686, 738, 831
Bme18I	GGWCC	9 cut(s)	136, 286, 409, 541, 651, 688, 729, 1291, 1488
BmeRI	GACNNNNNGTC	1 cut(s)	415
BmeT110I	CYCGRG	1 cut(s)	654
BmgBI	CACGTC	1 cut(s)	292
BmrFI	CCNGG	9 cut(s)	413, 518, 577, 636, 655, 656, 686, 738, 831
BmsI	GCATC	3 cut(s)	570, 895, 1270
BpiI	GAAGAC	1 cut(s)	578
BplI	GAGNNNNNCTC	4 cut(s)	1632, 1664, 1843, 1875
BpmI	CTGGAG	1 cut(s)	1001
BpuEI	CTTGAG	1 cut(s)	116
BpuMI	CCSGG	8 cut(s)	413, 518, 577, 636, 655, 656, 686, 738
BsaBI	GATNNNNATC	2 cut(s)	599, 1284
BsaHI	GRCGYC	1 cut(s)	399
BsaJI	CCNNGG	8 cut(s)	45, 373, 654, 655, 691, 736, 830, 1677
BsaWI	WCCGGW	2 cut(s)	433, 1255
BsaXI	ACNNNNNCTCC	2 cut(s)	281, 311
Bsc4I	CCNNNNNNNGG	7 cut(s)	419, 610, 641, 684, 979, 1190, 1795
Bse1I	ACTGG	2 cut(s)	1369, 1557
Bse3DI	GCAATG	3 cut(s)	968, 1812, 1938
Bse8I	GATNNNNATC	2 cut(s)	599, 1284
BseBI	CCWGG	1 cut(s)	831
BseDI	CCNNGG	8 cut(s)	45, 373, 654, 655, 691, 736, 830, 1677
BseGI	GGATG	6 cut(s)	585, 732, 901, 910, 1687, 1816
BseJI	GATNNNNATC	2 cut(s)	599, 1284
BseLI	CCNNNNNNNGG	7 cut(s)	419, 610, 641, 684, 979, 1190, 1795
BseMI	GCAATG	3 cut(s)	968, 1812, 1938
BseMII	CTCAG	6 cut(s)	544, 1176, 1206, 1448, 1760, 1943
BseNI	ACTGG	2 cut(s)	1369, 1557
BseRI	GAGGAG	4 cut(s)	47, 632, 1021, 1938
BseSI	GKGCMC	1 cut(s)	970
BseX3I	CGGCCG	1 cut(s)	370
BseXI	GCAGC	6 cut(s)	466, 469, 472, 490, 508, 1192
BseYI	CCCAGC	4 cut(s)	175, 200, 206, 908
BsgI	GTGCAG	2 cut(s)	497, 1895
Bsh1236I	CGCG	5 cut(s)	281, 341, 375, 425, 1768
Bsh1285I	CGRYCG	3 cut(s)	270, 373, 503
BshFI	GGCC	4 cut(s)	372, 671, 696, 1234
BsiEI	CGRYCG	3 cut(s)	270, 373, 503
BsiHKAI	GWGCWC	6 cut(s)	324, 513, 684, 845, 970, 1199
BsiHKCI	CYCGRG	1 cut(s)	654
BslFI	GGGAC	4 cut(s)	80, 122, 701, 1501
BslI	CCNNNNNNNGG	7 cut(s)	419, 610, 641, 684, 979, 1190, 1795
BsmAI	GTCTC	2 cut(s)	381, 883
BsmBI	CGTCTC	2 cut(s)	381, 883
BsmFI	GGGAC	4 cut(s)	80, 122, 701, 1501
BsnI	GGCC	4 cut(s)	372, 671, 696, 1234
BsoBI	CYCGRG	1 cut(s)	654
Bsp1286I	GDGCHC	7 cut(s)	53, 324, 513, 684, 845, 970, 1199
Bsp19I	CCATGG	2 cut(s)	45, 1677
Bsp68I	TCGCGA	1 cut(s)	341
BspANI	GGCC	4 cut(s)	372, 671, 696, 1234
BspCNI	CTCAG	6 cut(s)	543, 1177, 1207, 1449, 1759, 1944
BspFNI	CGCG	5 cut(s)	281, 341, 375, 425, 1768
BspMI	ACCTGC	1 cut(s)	1330
BspPI	GGATC	3 cut(s)	191, 595, 608
BspQI	GCTCTTC	1 cut(s)	329
BspTI	CTTAAG	1 cut(s)	1205
BsrDI	GCAATG	3 cut(s)	968, 1812, 1938
BsrI	ACTGG	2 cut(s)	1369, 1557
BssECI	CCNNGG	8 cut(s)	45, 373, 654, 655, 691, 736, 830, 1677
BssNAI	GTATAC	1 cut(s)	1635
BssNI	GRCGYC	1 cut(s)	399
BssSI	CACGAG	1 cut(s)	1651
BssT1I	CCWWGG	2 cut(s)	45, 1677
Bst1107I	GTATAC	1 cut(s)	1635
Bst2BI	CACGAG	1 cut(s)	1651
Bst2UI	CCWGG	1 cut(s)	831
Bst4CI	ACNGT	3 cut(s)	692, 710, 1385
Bst6I	CTCTTC	2 cut(s)	329, 764
BstACI	GRCGYC	1 cut(s)	399
BstAFI	CTTAAG	1 cut(s)	1205
BstC8I	GCNNGC	5 cut(s)	452, 465, 669, 1615, 1662
BstDEI	CTNAG	8 cut(s)	530, 1185, 1215, 1223, 1313, 1457, 1746, 1952
BstDSI	CCRYGG	4 cut(s)	45, 373, 691, 1677
BstEII	GGTNACC	2 cut(s)	520, 752
BstF5I	GGATG	6 cut(s)	585, 732, 901, 910, 1687, 1816
BstFNI	CGCG	5 cut(s)	281, 341, 375, 425, 1768
BstH2I	RGCGCY	1 cut(s)	1620
BstHHI	GCGC	4 cut(s)	283, 425, 1619, 1768
BstMAI	GTCTC	2 cut(s)	381, 883
BstMCI	CGRYCG	3 cut(s)	270, 373, 503
BstMWI	GCNNNNNNNGC	5 cut(s)	366, 372, 375, 381, 460
BstNI	CCWGG	1 cut(s)	831
BstNSI	RCATGY	1 cut(s)	1613
BstPI	GGTNACC	2 cut(s)	520, 752
BstSCI	CCNGG	9 cut(s)	411, 516, 575, 634, 653, 654, 684, 736, 829
BstSLI	GKGCMC	1 cut(s)	970
BstUI	CGCG	5 cut(s)	281, 341, 375, 425, 1768
BstV1I	GCAGC	6 cut(s)	466, 469, 472, 490, 508, 1192
BstV2I	GAAGAC	1 cut(s)	578
BstX2I	RGATCY	2 cut(s)	600, 1749
BstYI	RGATCY	2 cut(s)	600, 1749
BstZ17I	GTATAC	1 cut(s)	1635
BstZI	CGGCCG	1 cut(s)	370
BsuI	GTATCC	1 cut(s)	786
BsuRI	GGCC	4 cut(s)	372, 671, 696, 1234
BtgI	CCRYGG	4 cut(s)	45, 373, 691, 1677
BtrI	CACGTC	1 cut(s)	292
BtsCI	GGATG	6 cut(s)	585, 732, 901, 910, 1687, 1816
BtsI	GCAGTG	1 cut(s)	1517
BtsIMutI	CAGTG	1 cut(s)	1517
BtuMI	TCGCGA	1 cut(s)	341
BveI	ACCTGC	1 cut(s)	1330
Cac8I	GCNNGC	5 cut(s)	452, 465, 669, 1615, 1662
CaiI	CAGNNNCTG	2 cut(s)	463, 979
CciNI	GCGGCCGC	1 cut(s)	370
CfoI	GCGC	4 cut(s)	283, 425, 1619, 1768
Cfr42I	CCGCGG	1 cut(s)	376
Cfr9I	CCCGGG	1 cut(s)	654
CseI	GACGC	2 cut(s)	388, 1757
Csp6I	GTAC	3 cut(s)	490, 889, 1854
CviAII	CATG	9 cut(s)	46, 772, 797, 935, 1058, 1337, 1535, 1610, 1678
CviQI	GTAC	3 cut(s)	490, 889, 1854
DdeI	CTNAG	8 cut(s)	530, 1185, 1215, 1223, 1313, 1457, 1746, 1952
DriI	GACNNNNNGTC	1 cut(s)	415
EaeI	YGGCCR	1 cut(s)	370
EagI	CGGCCG	1 cut(s)	370
Eam1104I	CTCTTC	2 cut(s)	329, 764
Eam1105I	GACNNNNNGTC	1 cut(s)	415
EarI	CTCTTC	2 cut(s)	329, 764
EciI	GGCGGA	3 cut(s)	399, 482, 629
Ecl136II	GAGCTC	4 cut(s)	322, 511, 843, 1197
EclXI	CGGCCG	1 cut(s)	370
Eco130I	CCWWGG	2 cut(s)	45, 1677
Eco24I	GRGCYC	5 cut(s)	53, 324, 513, 845, 1199
Eco47I	GGWCC	9 cut(s)	136, 286, 409, 541, 651, 688, 729, 1291, 1488
Eco52I	CGGCCG	1 cut(s)	370
Eco53kI	GAGCTC	4 cut(s)	322, 511, 843, 1197
Eco88I	CYCGRG	1 cut(s)	654
Eco91I	GGTNACC	2 cut(s)	520, 752
EcoICRI	GAGCTC	4 cut(s)	322, 511, 843, 1197
EcoO109I	RGGNCCY	3 cut(s)	136, 1291, 1488
EcoO65I	GGTNACC	2 cut(s)	520, 752
EcoRII	CCWGG	1 cut(s)	829
EcoT14I	CCWWGG	2 cut(s)	45, 1677
EcoT22I	ATGCAT	1 cut(s)	1017
EcoT38I	GRGCYC	5 cut(s)	53, 324, 513, 845, 1199
ErhI	CCWWGG	2 cut(s)	45, 1677
Esp3I	CGTCTC	2 cut(s)	381, 883
FaeI	CATG	9 cut(s)	49, 775, 800, 938, 1061, 1340, 1538, 1613, 1681
FaqI	GGGAC	4 cut(s)	80, 122, 701, 1501
FatI	CATG	9 cut(s)	45, 771, 796, 934, 1057, 1336, 1534, 1609, 1677
FauI	CCCGC	4 cut(s)	501, 660, 878, 1515
FbaI	TGATCA	3 cut(s)	1285, 1438, 1891
FblI	GTMKAC	2 cut(s)	294, 1634
FokI	GGATG	6 cut(s)	592, 719, 908, 917, 1694, 1823
FriOI	GRGCYC	5 cut(s)	53, 324, 513, 845, 1199
FspBI	CTAG	1 cut(s)	110
GlaI	GCGC	4 cut(s)	282, 424, 1618, 1767
GsaI	CCCAGC	4 cut(s)	179, 204, 210, 912
GsuI	CTGGAG	1 cut(s)	1001
HaeII	RGCGCY	1 cut(s)	1620
HaeIII	GGCC	4 cut(s)	372, 671, 696, 1234
HgaI	GACGC	2 cut(s)	388, 1757
HhaI	GCGC	4 cut(s)	283, 425, 1619, 1768
Hin1I	GRCGYC	1 cut(s)	399
Hin1II	CATG	9 cut(s)	49, 775, 800, 938, 1061, 1340, 1538, 1613, 1681
Hin6I	GCGC	4 cut(s)	281, 423, 1617, 1766
HinP1I	GCGC	4 cut(s)	281, 423, 1617, 1766
HincII	GTYRAC	1 cut(s)	1381
HindII	GTYRAC	1 cut(s)	1381
HindIII	AAGCTT	1 cut(s)	1160
HpaI	GTTAAC	1 cut(s)	1381
HphI	GGTGA	4 cut(s)	514, 764, 1519, 1697
Hpy166II	GTNNAC	4 cut(s)	295, 968, 1381, 1635
Hpy188III	TCNNGA	8 cut(s)	68, 340, 407, 568, 1109, 1289, 1651, 1757
Hpy8I	GTNNAC	4 cut(s)	295, 968, 1381, 1635
Hpy99I	CGWCG	6 cut(s)	173, 275, 365, 404, 539, 868
HpyAV	CCTTC	3 cut(s)	202, 346, 1501
HpyCH4III	ACNGT	3 cut(s)	692, 710, 1385
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	7 cut(s)	478, 968, 1015, 1325, 1805, 1876, 1931
HpyF10VI	GCNNNNNNNGC	5 cut(s)	366, 372, 375, 381, 460
HpyF3I	CTNAG	8 cut(s)	530, 1185, 1215, 1223, 1313, 1457, 1746, 1952
HpySE526I	ACGT	1 cut(s)	291
Hsp92I	GRCGYC	1 cut(s)	399
Hsp92II	CATG	9 cut(s)	49, 775, 800, 938, 1061, 1340, 1538, 1613, 1681
HspAI	GCGC	4 cut(s)	281, 423, 1617, 1766
Ksp22I	TGATCA	3 cut(s)	1285, 1438, 1891
KspAI	GTTAAC	1 cut(s)	1381
KspI	CCGCGG	1 cut(s)	376
LguI	GCTCTTC	1 cut(s)	329
LmnI	GCTCC	9 cut(s)	184, 215, 687, 775, 834, 853, 1194, 1202, 1657
Lsp1109I	GCAGC	6 cut(s)	466, 469, 472, 490, 508, 1192
LweI	GCATC	3 cut(s)	570, 895, 1270
MaeI	CTAG	1 cut(s)	110
MaeII	ACGT	1 cut(s)	291
MaeIII	GTNAC	4 cut(s)	520, 752, 1525, 2018
MflI	RGATCY	2 cut(s)	600, 1749
MhlI	GDGCHC	7 cut(s)	53, 324, 513, 684, 845, 970, 1199
MluCI	AATT	6 cut(s)	63, 100, 816, 1023, 1396, 1668
MlyI	GAGTC	2 cut(s)	425, 1228
MmeI	TCCRAC	5 cut(s)	237, 981, 1355, 1496, 1796
Mph1103I	ATGCAT	1 cut(s)	1017
MseI	TTAA	5 cut(s)	954, 1158, 1206, 1380, 1961
MspA1I	CMGCKG	5 cut(s)	375, 463, 481, 499, 1795
MspCI	CTTAAG	1 cut(s)	1205
MspR9I	CCNGG	9 cut(s)	413, 518, 577, 636, 655, 656, 686, 738, 831
MvaI	CCWGG	1 cut(s)	831
MvnI	CGCG	5 cut(s)	281, 341, 375, 425, 1768
MwoI	GCNNNNNNNGC	5 cut(s)	366, 372, 375, 381, 460
NciI	CCSGG	8 cut(s)	413, 518, 577, 636, 655, 656, 686, 738
NcoI	CCATGG	2 cut(s)	45, 1677
NlaIII	CATG	9 cut(s)	49, 775, 800, 938, 1061, 1340, 1538, 1613, 1681
NmuCI	GTSAC	3 cut(s)	520, 752, 1525
NotI	GCGGCCGC	1 cut(s)	370
NruI	TCGCGA	1 cut(s)	341
NsiI	ATGCAT	1 cut(s)	1017
NspI	RCATGY	1 cut(s)	1613
PaqCI	CACCTGC	1 cut(s)	1330
PciSI	GCTCTTC	1 cut(s)	329
PcsI	WCGNNNNNNNCGW	2 cut(s)	297, 396
PfeI	GAWTC	9 cut(s)	349, 590, 595, 631, 1054, 1105, 1170, 1252, 1519
PflFI	GACNNNGTC	2 cut(s)	290, 398
PflMI	CCANNNNNTGG	1 cut(s)	979
PfoI	TCCNGGA	1 cut(s)	684
Ple19I	CGATCG	1 cut(s)	270
PleI	GAGTC	2 cut(s)	424, 1227
PpsI	GAGTC	2 cut(s)	424, 1227
PpuMI	RGGWCCY	3 cut(s)	136, 1291, 1488
PsiI	TTATAA	1 cut(s)	1152
Psp124BI	GAGCTC	4 cut(s)	324, 513, 845, 1199
Psp5II	RGGWCCY	3 cut(s)	136, 1291, 1488
Psp6I	CCWGG	1 cut(s)	829
PspEI	GGTNACC	2 cut(s)	520, 752
PspFI	CCCAGC	4 cut(s)	175, 200, 206, 908
PspGI	CCWGG	1 cut(s)	829
PspPPI	RGGWCCY	3 cut(s)	136, 1291, 1488
PstNI	CAGNNNCTG	2 cut(s)	463, 979
PsuI	RGATCY	2 cut(s)	600, 1749
PsyI	GACNNNGTC	2 cut(s)	290, 398
PvuI	CGATCG	1 cut(s)	270
PvuII	CAGCTG	1 cut(s)	463
RruI	TCGCGA	1 cut(s)	341
RsaI	GTAC	3 cut(s)	491, 890, 1855
RsaNI	GTAC	3 cut(s)	490, 889, 1854
SacI	GAGCTC	4 cut(s)	324, 513, 845, 1199
SacII	CCGCGG	1 cut(s)	376
SapI	GCTCTTC	1 cut(s)	329
SaqAI	TTAA	5 cut(s)	954, 1158, 1206, 1380, 1961
SchI	GAGTC	2 cut(s)	425, 1228
ScrFI	CCNGG	9 cut(s)	413, 518, 577, 636, 655, 656, 686, 738, 831
SduI	GDGCHC	7 cut(s)	53, 324, 513, 684, 845, 970, 1199
SfaNI	GCATC	3 cut(s)	570, 895, 1270
Sfr303I	CCGCGG	1 cut(s)	376
SgrBI	CCGCGG	1 cut(s)	376
SinI	GGWCC	9 cut(s)	136, 286, 409, 541, 651, 688, 729, 1291, 1488
SmaI	CCCGGG	1 cut(s)	656
SmlI	CTYRAG	2 cut(s)	131, 1205
SmoI	CTYRAG	2 cut(s)	131, 1205
Sse9I	AATT	6 cut(s)	63, 100, 816, 1023, 1396, 1668
SspMI	CTAG	1 cut(s)	110
SstI	GAGCTC	4 cut(s)	324, 513, 845, 1199
StyD4I	CCNGG	9 cut(s)	411, 516, 575, 634, 653, 654, 684, 736, 829
StyI	CCWWGG	2 cut(s)	45, 1677
TaaI	ACNGT	3 cut(s)	692, 710, 1385
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	8 cut(s)	147, 195, 266, 503, 593, 845, 1070, 1173
TasI	AATT	6 cut(s)	63, 100, 816, 1023, 1396, 1668
TauI	GCSGC	7 cut(s)	278, 281, 369, 372, 375, 378, 674
TfiI	GAWTC	9 cut(s)	349, 590, 595, 631, 1054, 1105, 1170, 1252, 1519
Tru1I	TTAA	5 cut(s)	954, 1158, 1206, 1380, 1961
Tru9I	TTAA	5 cut(s)	954, 1158, 1206, 1380, 1961
TscAI	CASTG	1 cut(s)	1517
TseFI	GTSAC	3 cut(s)	520, 752, 1525
TseI	GCWGC	6 cut(s)	454, 457, 460, 478, 496, 1180
Tsp45I	GTSAC	3 cut(s)	520, 752, 1525
TspDTI	ATGAA	4 cut(s)	1046, 1407, 1427, 2007
TspGWI	ACGGA	6 cut(s)	82, 545, 664, 667, 1035, 1374
TspMI	CCCGGG	1 cut(s)	654
TspRI	CASTG	1 cut(s)	1517
Tth111I	GACNNNGTC	2 cut(s)	290, 398
Van91I	CCANNNNNTGG	1 cut(s)	979
Vha464I	CTTAAG	1 cut(s)	1205
VneI	GTGCAC	1 cut(s)	966
VpaK11BI	GGWCC	9 cut(s)	136, 286, 409, 541, 651, 688, 729, 1291, 1488
XapI	RAATTY	1 cut(s)	1668
XceI	RCATGY	1 cut(s)	1613
XmaI	CCCGGG	1 cut(s)	654
XmiI	GTMKAC	2 cut(s)	294, 1634
XspI	CTAG	1 cut(s)	110
Zsp2I	ATGCAT	1 cut(s)	1017

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.