Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0009622

Physical Location & Seq

Genomic Coordinates Reverse (-)

8992384 .. 9000564

Gene Structure 8181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG059100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2061 bp

ATGCCCATCTCTCTTTCTACTCAAACCCACTTCTTTCCTTTGACCATGGGCTCTCTCCTCCCAATTCTCGACCTCAATGCCTCCCCTCAATCCGCCCCCAATTCAACCCTAGCCACCGCCACCATATCCCTCAAGGTCCCCAAAATCGAACCCAAGCCCGAACCCTGCGACGACCCAGCTCCCCAACCCCCCTTCGATCCCAGCCCCAGCTCCGACATTTTCCCCAATCCCCAAACTACCCCCCTCCCCCATCAGACCTCGATTGTCGCCGCCGCGCCGGACCACGTCTACTCCGAGTTCCACCGCATTTCGGAGCTCTTCCACACCGCCTTCGCGAAAGGGATTCAGAACTGCGACGGCGGCGGCGGCGGCGGCGGTGGAGACGAGGACGGCGTCGTTCTGGACCCGGAGTCCGGCGCGATTGTTCCGGTGGAGGACAACAACCAGCAGCAGCAGCTGGCGGAGGTGGTGCAGCGGAAGAAGTACCCGCAGCGGTCGAACGAGCTCGTCCGGGTCACCGATCTCAGCGACGAGGACCACCGCTACTTCCGTGAGGTCGTCAGGAAGACCCGGATGCTCTACGATTCGATTCGGATCCTCTCGGTGGCGGAGGAGGACAAGAAGAATCCGGGTCAGGGGAAACGGACCCGGGGCGACTTGCGGGCCGCCTCGGTGCTCCGGGACCGTGGGCTCTGGCTCAACCGTGATAAGCGGATTGTGGGGTCCATTCCGGGAGTCTATGTTGGTGACCTCTTCTTCTTTCGCATGGAGCTATGTGTGGTTGGGATACATGGACAAGTGCAAGCTGGAATTGACTATCTTCCGGGGAGCCAGAGCTCGAACAGGGAGCCGATTGCCACGAGCATTATCGTCTCCGGCGGGTACGAGGATGATGAGGATGCTGGGGATATTATTATCTACACAGGACATGGAGGGCAGGACAAGTTTAATAGGCAATGTGCGCACCAGAAGCTGGAGGGTGGGAACCTGGCGTTGGAGAGGAGTATGCATTACGGGATTGAAGTGAGGGTTATTAGGGGGAGGAAGATTCATGGAGCGGTTTCGAGTAAGGTGTATGTCTATGATGGGTTGTATAGGATTCTTGAAACTTGGCTTGATGTTGGGAAGTCGGGGTTTGGTGTTTATAAGTTTAAGCTTTTGAGAATCGAGGGGCAGCCTGAGATGGGGAGCTCCATTCTTAAGTTTGCCGAGAGTCTTAGGAGTAGGCCGTTGAGTGTGAGGCCGAGGGGTTATCTTAGTTTGGATCTTTCGCAGCAGAGGGAGAAGATTCCGGTGTTGCTTTTCAATGACATTGATGCTGATCAGGACCCCTTGTATTATGAGTATCTTAGGACACCTGCATTTCCAACTCATGTGTATCACCAGTCGGCAAACGGTACTGGCTGTGAATGTGTTAACGGTTGTAATGAAAATTGCTTTTGTGCTATGAAAAATGGAGGGGAGTTTCCTTATGATCAGAATGGGTTTCTTTTGAGGGGGAAGCCTGTGGTATTTGAGTGTGGGACCTTCTGCCGTTGCCCCCCGCAGTGTCGGAATCGTGTCACCCAACATGGATTGAGAAATAGACTGGAAGTGTTTAGATCAAGGGAAACAGGTTGGGGGGTTAGGTCTTTGGACTTGATACATGCTGGCGCTTTTATATGTGAGTATACAGGAGTTATTCTCACGAGGGAGCAGGCTCAAATTTTTTCCATGGATGGTGATAGCTTGATCTATCCCCATCGGTTTTCTGATAAATGGGCAGAATGGGGAGATTTATCTCAGATCTATCCTGATTATGCGCGTCCAACGTATCCAGCAATCCCACCGCTGGATTTTGCAATGGATGTGTCAAAAATGAGGAATGTTGCTTGTTATATGAGCCAGAGTACCACTCCAAATGTGATGGTGCAGTTCGTTCTCTATGATCACAACAACTTGATGTTTCCTCATCTTATGCTATTTGCAATGGAGAACATTCCTCCTCTGAGGGAGTTAAGCCTTGACTATGGGGTGGCGGTGGCTGATGAATGGACAGGGAAACTTGCTATCTGTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000775 GO:0000785 GO:0000790 GO:0000792 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005720 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008276 GO:0009292 GO:0009294 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0019222 GO:0019538 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0034641 GO:0036211 GO:0040029 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044728 GO:0044764 GO:0046483 GO:0048519 GO:0050789 GO:0051276 GO:0051704 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080188 GO:0090304 GO:0098687 GO:0140096 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

686

Amino Acids

76.67

Weight (kDa)

5.81

Isoelectric Point (pI)

44.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAD_SRA	PF02182	240 - 392	3.7e-52	SAD/SRA domain
Pre-SET	PF05033	424 - 520	2.5e-20	Pre-SET motif
SET	PF00856	539 - 671	3.9e-11	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009622)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13460 AT4G13460
fragaria_vesca	FvH4_2g20121
malus_domestica	MD13G1224000.v1.1 MD16G1228800.v1.1
prunus_persica	Prupe.1G050800_v2.0.a1 Prupe.1G050800_v2.0.a1 Prupe.1G050800_v2.0.a1 Prupe.1G050800_v2.0.a1
pyrus_communis	pycom13g19790
rosa_chinensis	RchiOBHm_Chr4g0395951
rosa_laevigata	RLG00000009586
rosa_multiflora	Rmu_sc0001103.1_g000009
rosa_roxburghii	Rroxscaffold_5G00340700
rosa_rugosa	Rorug03G0353200 Rorug03G0353300
rosa_samantha	Rh4AG063100 Rh4AG064100 Rh4BG062900 Rh4CG069200 Rh4DG059100
rosa_wichuraiana	Rw4G005180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1146
AarI	CACCTGC	1 cut(s)	1366
Acc16I	TGCGCA	1 cut(s)	963
Acc36I	ACCTGC	1 cut(s)	1366
AccB7I	CCANNNNNTGG	1 cut(s)	973
AccBSI	CCGCTC	1 cut(s)	1058
AccI	GTMKAC	2 cut(s)	288, 1670
AccII	CGCG	4 cut(s)	275, 335, 419, 1804
AclWI	GGATC	4 cut(s)	191, 589, 602, 1272
AcsI	RAATTY	1 cut(s)	1704
AcyI	GRCGYC	1 cut(s)	393
AfaI	GTAC	4 cut(s)	485, 884, 1399, 1891
AfiI	CCNNNNNNNGG	8 cut(s)	310, 413, 604, 635, 973, 994, 1184, 1831
AflII	CTTAAG	1 cut(s)	1199
AgsI	TTSAA	4 cut(s)	105, 1022, 1106, 1306
AhdI	GACNNNNNGTC	1 cut(s)	409
AjiI	CACGTC	1 cut(s)	286
AjnI	CCWGG	1 cut(s)	987
AjuI	GAANNNNNNNTTGG	2 cut(s)	977, 1009
Alw21I	GWGCWC	5 cut(s)	318, 507, 678, 839, 1193
Alw26I	GTCTC	2 cut(s)	375, 877
AlwI	GGATC	4 cut(s)	191, 589, 602, 1272
AlwNI	CAGNNNCTG	2 cut(s)	457, 973
Ama87I	CYCGRG	1 cut(s)	648
AoxI	GGCC	3 cut(s)	663, 1226, 1241
ApeKI	GCWGC	7 cut(s)	448, 451, 454, 472, 490, 1174, 1273
ApoI	RAATTY	1 cut(s)	1704
AspLEI	GCGC	5 cut(s)	277, 419, 964, 1655, 1804
AsuC2I	CCSGG	9 cut(s)	407, 512, 571, 630, 649, 650, 680, 732, 825
AsuHPI	GGTGA	5 cut(s)	508, 758, 1373, 1555, 1733
AvaI	CYCGRG	1 cut(s)	648
AvaII	GGWCC	9 cut(s)	136, 280, 403, 535, 645, 682, 723, 1327, 1524
BamHI	GGATCC	1 cut(s)	594
BanII	GRGCYC	6 cut(s)	53, 318, 507, 693, 839, 1193
BauI	CACGAG	2 cut(s)	859, 1687
BbsI	GAAGAC	1 cut(s)	572
Bbv12I	GWGCWC	5 cut(s)	318, 507, 678, 839, 1193
BbvI	GCAGC	7 cut(s)	460, 463, 466, 484, 502, 1186, 1285
BccI	CCATC	7 cut(s)	14, 258, 1079, 1177, 1712, 1749, 1900
BceAI	ACGGC	4 cut(s)	373, 406, 1213, 1518
BcgI	CGANNNNNNTGC	2 cut(s)	59, 93
BciT130I	CCWGG	1 cut(s)	989
BciVI	GTATCC	2 cut(s)	780, 1824
BclI	TGATCA	3 cut(s)	1321, 1474, 1927
BcnI	CCSGG	9 cut(s)	407, 512, 571, 630, 649, 650, 680, 732, 825
BcoDI	GTCTC	2 cut(s)	375, 877
BfaI	CTAG	1 cut(s)	110
BfoI	RGCGCY	1 cut(s)	1656
BfrI	CTTAAG	1 cut(s)	1199
BfuAI	ACCTGC	1 cut(s)	1366
BfuI	GTATCC	2 cut(s)	780, 1824
BglII	AGATCT	1 cut(s)	1785
Bme18I	GGWCC	9 cut(s)	136, 280, 403, 535, 645, 682, 723, 1327, 1524
BmeRI	GACNNNNNGTC	1 cut(s)	409
BmeT110I	CYCGRG	1 cut(s)	648
BmgBI	CACGTC	1 cut(s)	286
BmsI	GCATC	3 cut(s)	564, 889, 1306
BpiI	GAAGAC	1 cut(s)	572
BplI	GAGNNNNNCTC	4 cut(s)	1668, 1700, 1879, 1911
BpmI	CTGGAG	1 cut(s)	995
BpuEI	CTTGAG	1 cut(s)	116
BpuMI	CCSGG	9 cut(s)	407, 512, 571, 630, 649, 650, 680, 732, 825
BsaBI	GATNNNNATC	2 cut(s)	593, 1320
BsaHI	GRCGYC	1 cut(s)	393
BsaJI	CCNNGG	8 cut(s)	45, 648, 649, 669, 685, 824, 1244, 1713
BsaWI	WCCGGW	2 cut(s)	427, 1291
BsaXI	ACNNNNNCTCC	4 cut(s)	275, 305, 726, 756
Bsc4I	CCNNNNNNNGG	8 cut(s)	310, 413, 604, 635, 973, 994, 1184, 1831
Bse1I	ACTGG	3 cut(s)	1384, 1405, 1593
Bse3DI	GCAATG	3 cut(s)	962, 1848, 1974
Bse8I	GATNNNNATC	2 cut(s)	593, 1320
BseBI	CCWGG	1 cut(s)	989
BseDI	CCNNGG	8 cut(s)	45, 648, 649, 669, 685, 824, 1244, 1713
BseGI	GGATG	5 cut(s)	579, 895, 904, 1723, 1852
BseJI	GATNNNNATC	2 cut(s)	593, 1320
BseLI	CCNNNNNNNGG	8 cut(s)	310, 413, 604, 635, 973, 994, 1184, 1831
BseMI	GCAATG	3 cut(s)	962, 1848, 1974
BseMII	CTCAG	4 cut(s)	538, 1170, 1796, 1979
BseNI	ACTGG	3 cut(s)	1384, 1405, 1593
BseRI	GAGGAG	4 cut(s)	47, 626, 1015, 1974
BseXI	GCAGC	7 cut(s)	460, 463, 466, 484, 502, 1186, 1285
BseYI	CCCAGC	4 cut(s)	175, 200, 206, 902
BsgI	GTGCAG	2 cut(s)	491, 1931
Bsh1236I	CGCG	4 cut(s)	275, 335, 419, 1804
Bsh1285I	CGRYCG	1 cut(s)	497
BshFI	GGCC	3 cut(s)	665, 1228, 1243
BsiEI	CGRYCG	1 cut(s)	497
BsiHKAI	GWGCWC	5 cut(s)	318, 507, 678, 839, 1193
BsiHKCI	CYCGRG	1 cut(s)	648
BslFI	GGGAC	3 cut(s)	122, 695, 1537
BslI	CCNNNNNNNGG	8 cut(s)	310, 413, 604, 635, 973, 994, 1184, 1831
BsmAI	GTCTC	2 cut(s)	375, 877
BsmBI	CGTCTC	2 cut(s)	375, 877
BsmFI	GGGAC	3 cut(s)	122, 695, 1537
BsnI	GGCC	3 cut(s)	665, 1228, 1243
BsoBI	CYCGRG	1 cut(s)	648
Bsp1286I	GDGCHC	7 cut(s)	53, 318, 507, 678, 693, 839, 1193
Bsp19I	CCATGG	2 cut(s)	45, 1713
Bsp68I	TCGCGA	1 cut(s)	335
BspANI	GGCC	3 cut(s)	665, 1228, 1243
BspCNI	CTCAG	4 cut(s)	537, 1171, 1795, 1980
BspFNI	CGCG	4 cut(s)	275, 335, 419, 1804
BspMI	ACCTGC	1 cut(s)	1366
BspPI	GGATC	4 cut(s)	191, 589, 602, 1272
BspQI	GCTCTTC	1 cut(s)	323
BspTI	CTTAAG	1 cut(s)	1199
BsrBI	CCGCTC	1 cut(s)	1058
BsrDI	GCAATG	3 cut(s)	962, 1848, 1974
BsrI	ACTGG	3 cut(s)	1384, 1405, 1593
BssECI	CCNNGG	8 cut(s)	45, 648, 649, 669, 685, 824, 1244, 1713
BssNAI	GTATAC	1 cut(s)	1671
BssNI	GRCGYC	1 cut(s)	393
BssSI	CACGAG	2 cut(s)	859, 1687
BssT1I	CCWWGG	2 cut(s)	45, 1713
Bst1107I	GTATAC	1 cut(s)	1671
Bst2BI	CACGAG	2 cut(s)	859, 1687
Bst2UI	CCWGG	1 cut(s)	989
Bst4CI	ACNGT	4 cut(s)	686, 704, 1397, 1421
Bst6I	CTCTTC	2 cut(s)	323, 758
BstACI	GRCGYC	1 cut(s)	393
BstAFI	CTTAAG	1 cut(s)	1199
BstC8I	GCNNGC	5 cut(s)	459, 663, 804, 1651, 1698
BstDEI	CTNAG	7 cut(s)	524, 1179, 1217, 1256, 1349, 1782, 1988
BstDSI	CCRYGG	3 cut(s)	45, 685, 1713
BstEII	GGTNACC	2 cut(s)	514, 746
BstF5I	GGATG	5 cut(s)	579, 895, 904, 1723, 1852
BstFNI	CGCG	4 cut(s)	275, 335, 419, 1804
BstH2I	RGCGCY	1 cut(s)	1656
BstHHI	GCGC	5 cut(s)	277, 419, 964, 1655, 1804
BstMAI	GTCTC	2 cut(s)	375, 877
BstMCI	CGRYCG	1 cut(s)	497
BstMWI	GCNNNNNNNGC	7 cut(s)	360, 366, 369, 372, 454, 961, 970
BstNI	CCWGG	1 cut(s)	989
BstNSI	RCATGY	1 cut(s)	1649
BstPI	GGTNACC	2 cut(s)	514, 746
BstUI	CGCG	4 cut(s)	275, 335, 419, 1804
BstV1I	GCAGC	7 cut(s)	460, 463, 466, 484, 502, 1186, 1285
BstV2I	GAAGAC	1 cut(s)	572
BstX2I	RGATCY	3 cut(s)	594, 1264, 1785
BstYI	RGATCY	3 cut(s)	594, 1264, 1785
BstZ17I	GTATAC	1 cut(s)	1671
BsuI	GTATCC	2 cut(s)	780, 1824
BsuRI	GGCC	3 cut(s)	665, 1228, 1243
BtgI	CCRYGG	3 cut(s)	45, 685, 1713
BtrI	CACGTC	1 cut(s)	286
BtsCI	GGATG	5 cut(s)	579, 895, 904, 1723, 1852
BtsI	GCAGTG	1 cut(s)	1553
BtsIMutI	CAGTG	1 cut(s)	1553
BtuMI	TCGCGA	1 cut(s)	335
BveI	ACCTGC	1 cut(s)	1366
Cac8I	GCNNGC	5 cut(s)	459, 663, 804, 1651, 1698
CaiI	CAGNNNCTG	2 cut(s)	457, 973
CfoI	GCGC	5 cut(s)	277, 419, 964, 1655, 1804
Cfr9I	CCCGGG	1 cut(s)	648
CseI	GACGC	2 cut(s)	382, 1793
Csp6I	GTAC	4 cut(s)	484, 883, 1398, 1890
CviAII	CATG	9 cut(s)	46, 766, 791, 929, 1052, 1373, 1571, 1646, 1714
CviQI	GTAC	4 cut(s)	484, 883, 1398, 1890
DdeI	CTNAG	7 cut(s)	524, 1179, 1217, 1256, 1349, 1782, 1988
DriI	GACNNNNNGTC	1 cut(s)	409
Eam1104I	CTCTTC	2 cut(s)	323, 758
Eam1105I	GACNNNNNGTC	1 cut(s)	409
EarI	CTCTTC	2 cut(s)	323, 758
EciI	GGCGGA	3 cut(s)	82, 476, 623
Ecl136II	GAGCTC	4 cut(s)	316, 505, 837, 1191
Eco130I	CCWWGG	2 cut(s)	45, 1713
Eco24I	GRGCYC	6 cut(s)	53, 318, 507, 693, 839, 1193
Eco47I	GGWCC	9 cut(s)	136, 280, 403, 535, 645, 682, 723, 1327, 1524
Eco53kI	GAGCTC	4 cut(s)	316, 505, 837, 1191
Eco88I	CYCGRG	1 cut(s)	648
Eco91I	GGTNACC	2 cut(s)	514, 746
EcoICRI	GAGCTC	4 cut(s)	316, 505, 837, 1191
EcoO109I	RGGNCCY	3 cut(s)	136, 1327, 1524
EcoO65I	GGTNACC	2 cut(s)	514, 746
EcoRII	CCWGG	1 cut(s)	987
EcoT14I	CCWWGG	2 cut(s)	45, 1713
EcoT22I	ATGCAT	1 cut(s)	1011
EcoT38I	GRGCYC	6 cut(s)	53, 318, 507, 693, 839, 1193
ErhI	CCWWGG	2 cut(s)	45, 1713
Esp3I	CGTCTC	2 cut(s)	375, 877
FaeI	CATG	9 cut(s)	49, 769, 794, 932, 1055, 1376, 1574, 1649, 1717
FaqI	GGGAC	3 cut(s)	122, 695, 1537
FatI	CATG	9 cut(s)	45, 765, 790, 928, 1051, 1372, 1570, 1645, 1713
FauI	CCCGC	4 cut(s)	495, 654, 872, 1551
FbaI	TGATCA	3 cut(s)	1321, 1474, 1927
FblI	GTMKAC	2 cut(s)	288, 1670
FokI	GGATG	5 cut(s)	586, 902, 911, 1730, 1859
FriOI	GRGCYC	6 cut(s)	53, 318, 507, 693, 839, 1193
FspAI	RTGCGCAY	1 cut(s)	963
FspBI	CTAG	1 cut(s)	110
FspI	TGCGCA	1 cut(s)	963
GlaI	GCGC	5 cut(s)	276, 418, 963, 1654, 1803
GsaI	CCCAGC	4 cut(s)	179, 204, 210, 906
GsuI	CTGGAG	1 cut(s)	995
HaeII	RGCGCY	1 cut(s)	1656
HaeIII	GGCC	3 cut(s)	665, 1228, 1243
HgaI	GACGC	2 cut(s)	382, 1793
HhaI	GCGC	5 cut(s)	277, 419, 964, 1655, 1804
Hin1I	GRCGYC	1 cut(s)	393
Hin1II	CATG	9 cut(s)	49, 769, 794, 932, 1055, 1376, 1574, 1649, 1717
Hin6I	GCGC	5 cut(s)	275, 417, 962, 1653, 1802
HinP1I	GCGC	5 cut(s)	275, 417, 962, 1653, 1802
HincII	GTYRAC	1 cut(s)	1417
HindII	GTYRAC	1 cut(s)	1417
HindIII	AAGCTT	1 cut(s)	1154
HpaI	GTTAAC	1 cut(s)	1417
HphI	GGTGA	5 cut(s)	508, 758, 1373, 1555, 1733
Hpy166II	GTNNAC	3 cut(s)	289, 1417, 1671
Hpy188III	TCNNGA	8 cut(s)	68, 334, 401, 562, 1103, 1325, 1687, 1793
Hpy8I	GTNNAC	3 cut(s)	289, 1417, 1671
Hpy99I	CGWCG	4 cut(s)	173, 359, 398, 533
HpyAV	CCTTC	3 cut(s)	202, 340, 1537
HpyCH4III	ACNGT	4 cut(s)	686, 704, 1397, 1421
HpyCH4IV	ACGT	2 cut(s)	285, 1811
HpyCH4V	TGCA	7 cut(s)	472, 802, 1009, 1361, 1841, 1912, 1967
HpyF10VI	GCNNNNNNNGC	7 cut(s)	360, 366, 369, 372, 454, 961, 970
HpyF3I	CTNAG	7 cut(s)	524, 1179, 1217, 1256, 1349, 1782, 1988
HpySE526I	ACGT	2 cut(s)	285, 1811
Hsp92I	GRCGYC	1 cut(s)	393
Hsp92II	CATG	9 cut(s)	49, 769, 794, 932, 1055, 1376, 1574, 1649, 1717
HspAI	GCGC	5 cut(s)	275, 417, 962, 1653, 1802
Ksp22I	TGATCA	3 cut(s)	1321, 1474, 1927
KspAI	GTTAAC	1 cut(s)	1417
LguI	GCTCTTC	1 cut(s)	323
Lsp1109I	GCAGC	7 cut(s)	460, 463, 466, 484, 502, 1186, 1285
LweI	GCATC	3 cut(s)	564, 889, 1306
MaeI	CTAG	1 cut(s)	110
MaeII	ACGT	2 cut(s)	285, 1811
MaeIII	GTNAC	4 cut(s)	514, 746, 1561, 2054
MbiI	CCGCTC	1 cut(s)	1058
MboII	GAAGA	9 cut(s)	310, 490, 577, 634, 745, 748, 812, 1057, 1297
MflI	RGATCY	3 cut(s)	594, 1264, 1785
MhlI	GDGCHC	7 cut(s)	53, 318, 507, 678, 693, 839, 1193
MluCI	AATT	5 cut(s)	63, 100, 810, 1432, 1704
MlyI	GAGTC	3 cut(s)	419, 744, 1222
MmeI	TCCRAC	5 cut(s)	237, 975, 1391, 1532, 1832
Mph1103I	ATGCAT	1 cut(s)	1011
MseI	TTAA	5 cut(s)	948, 1152, 1200, 1416, 1997
MspA1I	CMGCKG	4 cut(s)	457, 475, 493, 1831
MspCI	CTTAAG	1 cut(s)	1199
MvaI	CCWGG	1 cut(s)	989
MvnI	CGCG	4 cut(s)	275, 335, 419, 1804
MwoI	GCNNNNNNNGC	7 cut(s)	360, 366, 369, 372, 454, 961, 970
NciI	CCSGG	9 cut(s)	407, 512, 571, 630, 649, 650, 680, 732, 825
NcoI	CCATGG	2 cut(s)	45, 1713
NlaIII	CATG	9 cut(s)	49, 769, 794, 932, 1055, 1376, 1574, 1649, 1717
NmeAIII	GCCGAG	2 cut(s)	1234, 1269
NmuCI	GTSAC	3 cut(s)	514, 746, 1561
NruI	TCGCGA	1 cut(s)	335
NsbI	TGCGCA	1 cut(s)	963
NsiI	ATGCAT	1 cut(s)	1011
NspI	RCATGY	1 cut(s)	1649
PaqCI	CACCTGC	1 cut(s)	1366
PciSI	GCTCTTC	1 cut(s)	323
PcsI	WCGNNNNNNNCGW	2 cut(s)	291, 390
PfeI	GAWTC	9 cut(s)	343, 584, 589, 625, 1048, 1099, 1164, 1288, 1555
PflFI	GACNNNGTC	2 cut(s)	284, 392
PflMI	CCANNNNNTGG	1 cut(s)	973
PfoI	TCCNGGA	2 cut(s)	678, 730
PleI	GAGTC	3 cut(s)	418, 743, 1221
PpsI	GAGTC	3 cut(s)	418, 743, 1221
PpuMI	RGGWCCY	3 cut(s)	136, 1327, 1524
PsiI	TTATAA	1 cut(s)	1146
Psp124BI	GAGCTC	4 cut(s)	318, 507, 839, 1193
Psp5II	RGGWCCY	3 cut(s)	136, 1327, 1524
Psp6I	CCWGG	1 cut(s)	987
PspEI	GGTNACC	2 cut(s)	514, 746
PspFI	CCCAGC	4 cut(s)	175, 200, 206, 902
PspGI	CCWGG	1 cut(s)	987
PspPPI	RGGWCCY	3 cut(s)	136, 1327, 1524
PstNI	CAGNNNCTG	2 cut(s)	457, 973
PsuI	RGATCY	3 cut(s)	594, 1264, 1785
PsyI	GACNNNGTC	2 cut(s)	284, 392
PvuII	CAGCTG	1 cut(s)	457
RruI	TCGCGA	1 cut(s)	335
RsaI	GTAC	4 cut(s)	485, 884, 1399, 1891
RsaNI	GTAC	4 cut(s)	484, 883, 1398, 1890
SacI	GAGCTC	4 cut(s)	318, 507, 839, 1193
SapI	GCTCTTC	1 cut(s)	323
SaqAI	TTAA	5 cut(s)	948, 1152, 1200, 1416, 1997
SchI	GAGTC	3 cut(s)	419, 744, 1222
SduI	GDGCHC	7 cut(s)	53, 318, 507, 678, 693, 839, 1193
SfaNI	GCATC	3 cut(s)	564, 889, 1306
SinI	GGWCC	9 cut(s)	136, 280, 403, 535, 645, 682, 723, 1327, 1524
SmaI	CCCGGG	1 cut(s)	650
SmlI	CTYRAG	2 cut(s)	131, 1199
SmoI	CTYRAG	2 cut(s)	131, 1199
Sse9I	AATT	5 cut(s)	63, 100, 810, 1432, 1704
SspMI	CTAG	1 cut(s)	110
SstI	GAGCTC	4 cut(s)	318, 507, 839, 1193
StyI	CCWWGG	2 cut(s)	45, 1713
TaaI	ACNGT	4 cut(s)	686, 704, 1397, 1421
TaiI	ACGT	2 cut(s)	288, 1814
TaqI	TCGA	9 cut(s)	69, 147, 195, 260, 497, 587, 839, 1064, 1167
TasI	AATT	5 cut(s)	63, 100, 810, 1432, 1704
TauI	GCSGC	8 cut(s)	272, 275, 363, 366, 369, 372, 375, 668
TfiI	GAWTC	9 cut(s)	343, 584, 589, 625, 1048, 1099, 1164, 1288, 1555
Tru1I	TTAA	5 cut(s)	948, 1152, 1200, 1416, 1997
Tru9I	TTAA	5 cut(s)	948, 1152, 1200, 1416, 1997
TscAI	CASTG	1 cut(s)	1553
TseFI	GTSAC	3 cut(s)	514, 746, 1561
TseI	GCWGC	7 cut(s)	448, 451, 454, 472, 490, 1174, 1273
Tsp45I	GTSAC	3 cut(s)	514, 746, 1561
TspDTI	ATGAA	4 cut(s)	1040, 1443, 1463, 2043
TspGWI	ACGGA	2 cut(s)	539, 658
TspMI	CCCGGG	1 cut(s)	648
TspRI	CASTG	1 cut(s)	1553
Tth111I	GACNNNGTC	2 cut(s)	284, 392
Van91I	CCANNNNNTGG	1 cut(s)	973
Vha464I	CTTAAG	1 cut(s)	1199
VpaK11BI	GGWCC	9 cut(s)	136, 280, 403, 535, 645, 682, 723, 1327, 1524
XapI	RAATTY	1 cut(s)	1704
XceI	RCATGY	1 cut(s)	1649
XmaI	CCCGGG	1 cut(s)	648
XmiI	GTMKAC	2 cut(s)	288, 1670
XspI	CTAG	1 cut(s)	110
Zsp2I	ATGCAT	1 cut(s)	1011

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.