Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011146

Physical Location & Seq

Genomic Coordinates Forward (+)

3554351 .. 3558017

Gene Structure 3667 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G050700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGAGGCCAATATTATCGTTCAGGAGCGCGACCATAATGATGTGTTTGCTGAACGTGATAACAGCTCTTCTATTGCTTCAGGGCTTTCTCTCCTCTGCTTCTTCTCGCTCCAAATTGTCCACCTCTCACCTCAATTCAGACTGTTTATACTTCCAACTGCAGCCACACTTAGGTATGTTCGAGAATCTGAAGAAATTCGTCTTGCTATGAGACCCTTGGAACTGATAAAAAGAGTGAAGGAAATCCAACAAGAAGTATATGCAAAACCAGAAACAGTTAAAGAGAAAGACACAAAGCAAACCGTTGCAGGTGACCTTTCTAAAAGATTGAAAGATCTGCATTCTGTTAATGATGCTACCAGCTTCAAAGCCTTGGAAGAATGGCGTAAAAGGAAGATGGAGAGAGCAAGACTACGTGAACTAGAAAAAAATGGAACACTCGCATCTCAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

152

Amino Acids

17.46

Weight (kDa)

9.07

Isoelectric Point (pI)

47.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04555
fragaria_vesca	FvH4_4g05040 FvH4_4g05040
malus_domestica	MD13G1223900.v1.1 MD16G1228700.v1.1
prunus_persica	Prupe.1G050700_v2.0.a1
pyrus_communis	pycom13g19780 pycom16g19140
rosa_chinensis	RchiOBHm_Chr4g0395941
rosa_laevigata	RLG00000009587
rosa_multiflora	Rmu_sc0001103.1_g000010
rosa_roxburghii	Rroxscaffold_5G00340690
rosa_rugosa	Rorug03G0353300 Rorug03G0353400
rosa_samantha	Rh4AG063000 Rh4AG064000 Rh4AG066600 Rh4BG062800 Rh4CG069100 Rh4DG059000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	299
Acc36I	ACCTGC	1 cut(s)	299
AccII	CGCG	1 cut(s)	30
AcsI	RAATTY	1 cut(s)	195
AcuI	CTGAAG	2 cut(s)	63, 210
AfiI	CCNNNNNNNGG	1 cut(s)	171
AgsI	TTSAA	2 cut(s)	331, 367
AluBI	AGCT	2 cut(s)	66, 363
AluI	AGCT	2 cut(s)	66, 363
Alw26I	GTCTC	1 cut(s)	205
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	1 cut(s)	161
ApoI	RAATTY	1 cut(s)	195
Asp700I	GAANNNNTTC	1 cut(s)	195
AspLEI	GCGC	1 cut(s)	30
AsuHPI	GGTGA	2 cut(s)	120, 323
BbvI	GCAGC	1 cut(s)	173
BccI	CCATC	1 cut(s)	391
BcoDI	GTCTC	1 cut(s)	205
BfaI	CTAG	1 cut(s)	422
BfmI	CTRYAG	1 cut(s)	159
BfuAI	ACCTGC	1 cut(s)	299
BglII	AGATCT	1 cut(s)	334
BisI	GCNGC	1 cut(s)	162
BlsI	GCNGC	1 cut(s)	163
BmsI	GCATC	2 cut(s)	343, 452
BpuEI	CTTGAG	1 cut(s)	432
BsaAI	YACGTR	1 cut(s)	416
BsaI	GGTCTC	1 cut(s)	205
BsaJI	CCNNGG	2 cut(s)	216, 372
Bsc4I	CCNNNNNNNGG	1 cut(s)	171
BseDI	CCNNGG	2 cut(s)	216, 372
BseLI	CCNNNNNNNGG	1 cut(s)	171
BseRI	GAGGAG	1 cut(s)	83
BseXI	GCAGC	1 cut(s)	173
Bsh1236I	CGCG	1 cut(s)	30
BshFI	GGCC	1 cut(s)	8
BslI	CCNNNNNNNGG	1 cut(s)	171
BsmAI	GTCTC	1 cut(s)	205
BsmI	GAATGC	1 cut(s)	340
BsnI	GGCC	1 cut(s)	8
Bso31I	GGTCTC	1 cut(s)	205
Bsp143I	GATC	1 cut(s)	334
BspANI	GGCC	1 cut(s)	8
BspFNI	CGCG	1 cut(s)	30
BspMAI	CTGCAG	1 cut(s)	163
BspMI	ACCTGC	1 cut(s)	299
BspQI	GCTCTTC	1 cut(s)	73
BspTNI	GGTCTC	1 cut(s)	205
BssECI	CCNNGG	2 cut(s)	216, 372
BssMI	GATC	1 cut(s)	334
BssT1I	CCWWGG	2 cut(s)	216, 372
Bst4CI	ACNGT	3 cut(s)	144, 277, 304
Bst6I	CTCTTC	1 cut(s)	73
BstBAI	YACGTR	1 cut(s)	416
BstDEI	CTNAG	1 cut(s)	170
BstEII	GGTNACC	1 cut(s)	311
BstFNI	CGCG	1 cut(s)	30
BstHHI	GCGC	1 cut(s)	30
BstKTI	GATC	1 cut(s)	337
BstMAI	GTCTC	1 cut(s)	205
BstMBI	GATC	1 cut(s)	334
BstMWI	GCNNNNNNNGC	1 cut(s)	449
BstPI	GGTNACC	1 cut(s)	311
BstSFI	CTRYAG	1 cut(s)	159
BstUI	CGCG	1 cut(s)	30
BstV1I	GCAGC	1 cut(s)	173
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
BsuRI	GGCC	1 cut(s)	8
BveI	ACCTGC	1 cut(s)	299
CfoI	GCGC	1 cut(s)	30
CviAII	CATG	1 cut(s)	453
CviJI	RGCY	6 cut(s)	8, 66, 85, 164, 363, 371
CviKI_1	RGCY	6 cut(s)	8, 66, 85, 164, 363, 371
DdeI	CTNAG	1 cut(s)	170
DpnI	GATC	1 cut(s)	336
DpnII	GATC	1 cut(s)	334
Eam1104I	CTCTTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	73
Eco130I	CCWWGG	2 cut(s)	216, 372
Eco31I	GGTCTC	1 cut(s)	205
Eco57I	CTGAAG	2 cut(s)	63, 210
Eco91I	GGTNACC	1 cut(s)	311
EcoO65I	GGTNACC	1 cut(s)	311
EcoT14I	CCWWGG	2 cut(s)	216, 372
ErhI	CCWWGG	2 cut(s)	216, 372
FaeI	CATG	1 cut(s)	456
FaiI	YATR	7 cut(s)	36, 149, 177, 209, 259, 261, 454
FatI	CATG	1 cut(s)	452
Fnu4HI	GCNGC	1 cut(s)	162
Fsp4HI	GCNGC	1 cut(s)	162
FspBI	CTAG	1 cut(s)	422
GlaI	GCGC	1 cut(s)	29
GluI	GCNGC	1 cut(s)	162
HaeIII	GGCC	1 cut(s)	8
HhaI	GCGC	1 cut(s)	30
Hin1II	CATG	1 cut(s)	456
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HinfI	GANTC	1 cut(s)	185
HphI	GGTGA	2 cut(s)	120, 323
Hpy166II	GTNNAC	2 cut(s)	121, 419
Hpy188I	TCNGA	2 cut(s)	140, 190
Hpy188III	TCNNGA	2 cut(s)	23, 182
Hpy8I	GTNNAC	2 cut(s)	121, 419
HpyAV	CCTTC	1 cut(s)	232
HpyCH4III	ACNGT	3 cut(s)	144, 277, 304
HpyCH4IV	ACGT	2 cut(s)	55, 415
HpyCH4V	TGCA	4 cut(s)	161, 263, 308, 340
HpyF10VI	GCNNNNNNNGC	1 cut(s)	449
HpyF3I	CTNAG	1 cut(s)	170
HpySE526I	ACGT	2 cut(s)	55, 415
Hsp92II	CATG	1 cut(s)	456
HspAI	GCGC	1 cut(s)	28
Kzo9I	GATC	1 cut(s)	334
LguI	GCTCTTC	1 cut(s)	73
LmnI	GCTCC	2 cut(s)	25, 114
LpnPI	CCDG	5 cut(s)	8, 66, 282, 294, 373
Lsp1109I	GCAGC	1 cut(s)	173
LweI	GCATC	2 cut(s)	343, 452
MaeI	CTAG	1 cut(s)	422
MaeII	ACGT	2 cut(s)	55, 415
MaeIII	GTNAC	1 cut(s)	311
MalI	GATC	1 cut(s)	336
MboI	GATC	1 cut(s)	334
MboII	GAAGA	5 cut(s)	60, 94, 203, 389, 406
MflI	RGATCY	1 cut(s)	334
MluCI	AATT	3 cut(s)	114, 134, 195
MmeI	TCCRAC	2 cut(s)	179, 271
MnlI	CCTC	3 cut(s)	104, 134, 141
MroXI	GAANNNNTTC	1 cut(s)	195
MseI	TTAA	2 cut(s)	279, 348
MslI	CAYNNNNRTG	1 cut(s)	39
Mva1269I	GAATGC	1 cut(s)	340
MvnI	CGCG	1 cut(s)	30
MwoI	GCNNNNNNNGC	1 cut(s)	449
NdeII	GATC	1 cut(s)	334
NlaIII	CATG	1 cut(s)	456
NmuCI	GTSAC	1 cut(s)	311
PaqCI	CACCTGC	1 cut(s)	299
PciSI	GCTCTTC	1 cut(s)	73
PctI	GAATGC	1 cut(s)	340
PdmI	GAANNNNTTC	1 cut(s)	195
PfeI	GAWTC	1 cut(s)	185
PkrI	GCNGC	1 cut(s)	163
Ppu21I	YACGTR	1 cut(s)	416
PspEI	GGTNACC	1 cut(s)	311
PstI	CTGCAG	1 cut(s)	163
PsuI	RGATCY	1 cut(s)	334
RseI	CAYNNNNRTG	1 cut(s)	39
SapI	GCTCTTC	1 cut(s)	73
SaqAI	TTAA	2 cut(s)	279, 348
SatI	GCNGC	1 cut(s)	162
Sau3AI	GATC	1 cut(s)	334
SetI	ASST	9 cut(s)	58, 68, 126, 133, 176, 313, 318, 365, 418
SfaNI	GCATC	2 cut(s)	343, 452
SfcI	CTRYAG	1 cut(s)	159
SmiMI	CAYNNNNRTG	1 cut(s)	39
SmlI	CTYRAG	1 cut(s)	447
SmoI	CTYRAG	1 cut(s)	447
Sse9I	AATT	3 cut(s)	114, 134, 195
SspI	AATATT	1 cut(s)	13
SspMI	CTAG	1 cut(s)	422
StyI	CCWWGG	2 cut(s)	216, 372
TaaI	ACNGT	3 cut(s)	144, 277, 304
TaiI	ACGT	2 cut(s)	58, 418
TaqI	TCGA	1 cut(s)	181
TasI	AATT	3 cut(s)	114, 134, 195
TfiI	GAWTC	1 cut(s)	185
Tru1I	TTAA	2 cut(s)	279, 348
Tru9I	TTAA	2 cut(s)	279, 348
TseFI	GTSAC	1 cut(s)	311
TseI	GCWGC	1 cut(s)	161
Tsp45I	GTSAC	1 cut(s)	311
XapI	RAATTY	1 cut(s)	195
XmnI	GAANNNNTTC	1 cut(s)	195
XspI	CTAG	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.