Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0011146

Physical Location & Seq

Genomic Coordinates Reverse (-)

14013163 .. 14015997

Gene Structure 2835 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG066600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGAGGGACAGCAGCCATGGAGGCCCAGATTGTCGTTCAGGAGCGCCACCATAATGATGTGCTTGCTGAACGTCATCACAGCTCTTCTTTTGCTTCAGGGCTTTCTCTTCTCTGCTTCTTCTCGCTCCAAATCCTCACCCAGTTCAGCCACACTCAGGTATATCAGAGAATCTGAAGAGATCCGTCTTGCTATGCGACCCTTGGAACTAATAAAAAGAGTGAGGGAAATCCAACGAGAAGCATCTGGAGAACCAGAAACACTCCAAGAGAAAGACACAAGGCAGACAGTTGCAGTTGACCTTTCAAAAAGATTGAAGGATCTGCATGCTACTAATGATGCTAACAGTTTGAAAGCCTTGGAAGAGTGGCGTAAACGGAAGATGGAACGAGCAAGACTGCGTGACCTAGAGAAAAATGGAACACACACATCTCAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

146

Amino Acids

16.85

Weight (kDa)

10.14

Isoelectric Point (pI)

53.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04555
fragaria_vesca	FvH4_4g05040 FvH4_4g05040
malus_domestica	MD13G1223900.v1.1 MD16G1228700.v1.1
prunus_persica	Prupe.1G050700_v2.0.a1
pyrus_communis	pycom13g19780 pycom16g19140
rosa_chinensis	RchiOBHm_Chr4g0395941
rosa_laevigata	RLG00000009587
rosa_multiflora	Rmu_sc0001103.1_g000010
rosa_roxburghii	Rroxscaffold_5G00340690
rosa_rugosa	Rorug03G0353300 Rorug03G0353400
rosa_samantha	Rh4AG063000 Rh4AG064000 Rh4AG066600 Rh4BG062800 Rh4CG069100 Rh4DG059000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	175, 327
AcuI	CTGAAG	2 cut(s)	80, 195
AfiI	CCNNNNNNNGG	1 cut(s)	156
AgsI	TTSAA	3 cut(s)	306, 316, 352
AluBI	AGCT	2 cut(s)	83, 437
AluI	AGCT	2 cut(s)	83, 437
AlwI	GGATC	2 cut(s)	175, 327
AoxI	GGCC	1 cut(s)	23
ApeKI	GCWGC	1 cut(s)	13
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	1 cut(s)	24
AsuHPI	GGTGA	1 cut(s)	129
BbvI	GCAGC	1 cut(s)	25
BccI	CCATC	1 cut(s)	376
BfaI	CTAG	1 cut(s)	407
BfoI	RGCGCY	1 cut(s)	48
BglI	GCCNNNNNGGC	1 cut(s)	22
BisI	GCNGC	1 cut(s)	14
BlsI	GCNGC	1 cut(s)	15
BmgT120I	GGNCC	1 cut(s)	24
BmrI	ACTGGG	1 cut(s)	135
BmsI	GCATC	2 cut(s)	251, 328
BmuI	ACTGGG	1 cut(s)	135
BpmI	CTGGAG	1 cut(s)	267
BpuEI	CTTGAG	1 cut(s)	417
BsaJI	CCNNGG	3 cut(s)	17, 201, 357
Bsc4I	CCNNNNNNNGG	1 cut(s)	156
Bse1I	ACTGG	1 cut(s)	141
BseDI	CCNNGG	3 cut(s)	17, 201, 357
BseLI	CCNNNNNNNGG	1 cut(s)	156
BseMII	CTCAG	1 cut(s)	169
BseNI	ACTGG	1 cut(s)	141
BseXI	GCAGC	1 cut(s)	25
BshFI	GGCC	1 cut(s)	25
BslFI	GGGAC	1 cut(s)	21
BslI	CCNNNNNNNGG	1 cut(s)	156
BsmFI	GGGAC	1 cut(s)	21
BsnI	GGCC	1 cut(s)	25
Bsp143I	GATC	2 cut(s)	180, 319
Bsp19I	CCATGG	1 cut(s)	17
BspANI	GGCC	1 cut(s)	25
BspCNI	CTCAG	1 cut(s)	168
BspPI	GGATC	2 cut(s)	175, 327
BspQI	GCTCTTC	1 cut(s)	90
BsrI	ACTGG	1 cut(s)	141
BssECI	CCNNGG	3 cut(s)	17, 201, 357
BssMI	GATC	2 cut(s)	180, 319
BssT1I	CCWWGG	3 cut(s)	17, 201, 357
Bst4CI	ACNGT	2 cut(s)	289, 347
Bst6I	CTCTTC	4 cut(s)	90, 113, 171, 357
BstC8I	GCNNGC	2 cut(s)	65, 327
BstDEI	CTNAG	1 cut(s)	155
BstDSI	CCRYGG	1 cut(s)	17
BstH2I	RGCGCY	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	2 cut(s)	183, 322
BstMBI	GATC	2 cut(s)	180, 319
BstMWI	GCNNNNNNNGC	1 cut(s)	22
BstNSI	RCATGY	1 cut(s)	329
BstV1I	GCAGC	1 cut(s)	25
BstX2I	RGATCY	2 cut(s)	180, 319
BstYI	RGATCY	2 cut(s)	180, 319
BsuRI	GGCC	1 cut(s)	25
BtgI	CCRYGG	1 cut(s)	17
Cac8I	GCNNGC	2 cut(s)	65, 327
CfoI	GCGC	1 cut(s)	47
Cfr13I	GGNCC	1 cut(s)	24
CviAII	CATG	2 cut(s)	18, 326
CviJI	RGCY	7 cut(s)	16, 25, 83, 102, 149, 356, 437
CviKI_1	RGCY	7 cut(s)	16, 25, 83, 102, 149, 356, 437
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	2 cut(s)	182, 321
DpnII	GATC	2 cut(s)	180, 319
Eam1104I	CTCTTC	4 cut(s)	90, 113, 171, 357
EarI	CTCTTC	4 cut(s)	90, 113, 171, 357
Eco130I	CCWWGG	3 cut(s)	17, 201, 357
Eco57I	CTGAAG	2 cut(s)	80, 195
EcoT14I	CCWWGG	3 cut(s)	17, 201, 357
ErhI	CCWWGG	3 cut(s)	17, 201, 357
FaeI	CATG	2 cut(s)	21, 329
FaiI	YATR	5 cut(s)	19, 53, 162, 194, 327
FaqI	GGGAC	1 cut(s)	21
FatI	CATG	2 cut(s)	17, 325
Fnu4HI	GCNGC	1 cut(s)	14
Fsp4HI	GCNGC	1 cut(s)	14
FspBI	CTAG	1 cut(s)	407
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	1 cut(s)	14
GsuI	CTGGAG	1 cut(s)	267
HaeII	RGCGCY	1 cut(s)	48
HaeIII	GGCC	1 cut(s)	25
HhaI	GCGC	1 cut(s)	47
Hin1II	CATG	2 cut(s)	21, 329
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HindIII	AAGCTT	1 cut(s)	435
HinfI	GANTC	1 cut(s)	170
HphI	GGTGA	1 cut(s)	129
Hpy166II	GTNNAC	2 cut(s)	298, 374
Hpy188I	TCNGA	2 cut(s)	167, 175
Hpy188III	TCNNGA	2 cut(s)	40, 246
Hpy8I	GTNNAC	2 cut(s)	298, 374
HpyAV	CCTTC	1 cut(s)	310
HpyCH4III	ACNGT	2 cut(s)	289, 347
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	2 cut(s)	293, 325
HpyF10VI	GCNNNNNNNGC	1 cut(s)	22
HpyF3I	CTNAG	1 cut(s)	155
HpySE526I	ACGT	1 cut(s)	72
Hsp92II	CATG	2 cut(s)	21, 329
HspAI	GCGC	1 cut(s)	45
Kzo9I	GATC	2 cut(s)	180, 319
LguI	GCTCTTC	1 cut(s)	90
LmnI	GCTCC	2 cut(s)	42, 131
LpnPI	CCDG	7 cut(s)	25, 40, 83, 142, 154, 231, 267
Lsp1109I	GCAGC	1 cut(s)	25
LweI	GCATC	2 cut(s)	251, 328
MaeI	CTAG	1 cut(s)	407
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	1 cut(s)	401
MalI	GATC	2 cut(s)	182, 321
MboI	GATC	2 cut(s)	180, 319
MboII	GAAGA	6 cut(s)	77, 100, 111, 188, 374, 391
MflI	RGATCY	2 cut(s)	180, 319
MmeI	TCCRAC	1 cut(s)	256
MnlI	CCTC	3 cut(s)	15, 145, 216
MslI	CAYNNNNRTG	2 cut(s)	53, 56
MwoI	GCNNNNNNNGC	1 cut(s)	22
NcoI	CCATGG	1 cut(s)	17
NdeII	GATC	2 cut(s)	180, 319
NlaIII	CATG	2 cut(s)	21, 329
NmuCI	GTSAC	1 cut(s)	401
NspI	RCATGY	1 cut(s)	329
PaeI	GCATGC	1 cut(s)	329
PciSI	GCTCTTC	1 cut(s)	90
PfeI	GAWTC	1 cut(s)	170
PkrI	GCNGC	1 cut(s)	15
PspPI	GGNCC	1 cut(s)	24
PsuI	RGATCY	2 cut(s)	180, 319
RseI	CAYNNNNRTG	2 cut(s)	53, 56
SapI	GCTCTTC	1 cut(s)	90
SatI	GCNGC	1 cut(s)	14
Sau3AI	GATC	2 cut(s)	180, 319
Sau96I	GGNCC	1 cut(s)	24
SetI	ASST	6 cut(s)	75, 85, 161, 303, 408, 439
SfaNI	GCATC	2 cut(s)	251, 328
SmiMI	CAYNNNNRTG	2 cut(s)	53, 56
SmlI	CTYRAG	1 cut(s)	432
SmoI	CTYRAG	1 cut(s)	432
SphI	GCATGC	1 cut(s)	329
SspMI	CTAG	1 cut(s)	407
StyI	CCWWGG	3 cut(s)	17, 201, 357
TaaI	ACNGT	2 cut(s)	289, 347
TaiI	ACGT	1 cut(s)	75
TfiI	GAWTC	1 cut(s)	170
TseFI	GTSAC	1 cut(s)	401
TseI	GCWGC	1 cut(s)	13
Tsp45I	GTSAC	1 cut(s)	401
TspGWI	ACGGA	2 cut(s)	173, 391
XceI	RCATGY	1 cut(s)	329
XspI	CTAG	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.