Rorug03G0353400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0011146
Physical Location & Seq
Forward (+)
43412168 .. 43412797
630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0353400.1

Sequence Viewer

Length: 549 bp
ATGGAACCACAAAACCAGCAACCATCCGAGGATGGAGGAAGCAACAAAGCAGCCGGGAGTAGTGCTAACATGCTTTGTAGGCAGAGCAGGTGGACTCCCACTACAGATCAGATAAGAATCCTCAAGGAGCTTTTCTACAATAAGGGAGTTAGGTCCCCAACTATAGAGCAGGTTCAGAGGATCTGTCTCCAGCTGAAATGGTACGGCAAGATCGAGTTCAAGAACGTCTATTTTTGGTTCGTGAACCAAAGGGCTCGGGAGAAGCAGAAGAAGAGGTCCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGCTGGTGTGATTGCTTTTAACAGGCAGATGGAGAACTATGGTGGTTATGGATCTATGAACATAGAGATTGAAACCCTTCCTCTGTTCCCCATGCATGGTGAGGACATCTTTGGCAACATGAAGACTACTTCCGATGGAGGTGGCGGTCACGGTGGTGGCTCTTACATTTCCCTTGAGCTCAGCCTTTCCTGCGAGGGCAAAGCTGGAAAAAGTTTCCGGAGCCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

182

Amino Acids

20.42

Weight (kDa)

9.43

Isoelectric Point (pI)

68.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 27 - 89 2e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 78
Acc36I ACCTGC 2 cut(s) 78, 160
AccIII TCCGGA 1 cut(s) 537
AciI CCGC 2 cut(s) 465, 544
AclWI GGATC 2 cut(s) 188, 379
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 1 cut(s) 416
AgsI TTSAA 2 cut(s) 220, 392
AleI CACNNNNGTG 1 cut(s) 474
AluBI AGCT 4 cut(s) 130, 193, 499, 524
AluI AGCT 4 cut(s) 130, 193, 499, 524
Alw21I GWGCWC 1 cut(s) 501
Alw26I GTCTC 1 cut(s) 191
AlwI GGATC 2 cut(s) 188, 379
Ama87I CYCGRG 1 cut(s) 255
Aor13HI TCCGGA 1 cut(s) 537
ApeKI GCWGC 1 cut(s) 50
Asp700I GAANNNNTTC 1 cut(s) 396
AspS9I GGNCC 2 cut(s) 153, 276
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 1 cut(s) 431
AvaI CYCGRG 1 cut(s) 255
AvaII GGWCC 2 cut(s) 153, 276
BaeGI GKGCMC 1 cut(s) 300
BanII GRGCYC 2 cut(s) 256, 501
BbsI GAAGAC 1 cut(s) 449
Bbv12I GWGCWC 1 cut(s) 501
BbvI GCAGC 1 cut(s) 62
BccI CCATC 4 cut(s) 26, 31, 343, 449
BceAI ACGGC 1 cut(s) 220
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 191
BfmI CTRYAG 2 cut(s) 102, 162
BfuAI ACCTGC 2 cut(s) 78, 160
BisI GCNGC 2 cut(s) 51, 544
BlpI GCTNAGC 1 cut(s) 500
BlsI GCNGC 2 cut(s) 52, 545
Bme1390I CCNGG 1 cut(s) 55
Bme18I GGWCC 2 cut(s) 153, 276
BmeT110I CYCGRG 1 cut(s) 255
BmgT120I GGNCC 2 cut(s) 153, 276
BmiI GGNNCC 3 cut(s) 6, 155, 542
BmrFI CCNGG 1 cut(s) 55
BpiI GAAGAC 1 cut(s) 449
BpmI CTGGAG 1 cut(s) 173
Bpu1102I GCTNAGC 1 cut(s) 500
BpuEI CTTGAG 2 cut(s) 107, 515
BpuMI CCSGG 1 cut(s) 55
BsaBI GATNNNNATC 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 27
BsaWI WCCGGW 1 cut(s) 537
Bsc4I CCNNNNNNNGG 1 cut(s) 416
Bse8I GATNNNNATC 1 cut(s) 116
BseAI TCCGGA 1 cut(s) 537
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 3 cut(s) 23, 37, 292
BseJI GATNNNNATC 1 cut(s) 116
BseLI CCNNNNNNNGG 1 cut(s) 416
BseMII CTCAG 1 cut(s) 514
BseSI GKGCMC 1 cut(s) 300
BseXI GCAGC 1 cut(s) 62
BsiHKAI GWGCWC 1 cut(s) 501
BsiHKCI CYCGRG 1 cut(s) 255
BsiSI CCGG 2 cut(s) 54, 538
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 1 cut(s) 416
BsmAI GTCTC 1 cut(s) 191
BsmFI GGGAC 1 cut(s) 139
BsoBI CYCGRG 1 cut(s) 255
Bsp1286I GDGCHC 3 cut(s) 256, 300, 501
Bsp13I TCCGGA 1 cut(s) 537
Bsp143I GATC 5 cut(s) 106, 180, 210, 308, 371
Bsp1720I GCTNAGC 1 cut(s) 500
BspACI CCGC 2 cut(s) 465, 544
BspCNI CTCAG 1 cut(s) 513
BspEI TCCGGA 1 cut(s) 537
BspLI GGNNCC 3 cut(s) 6, 155, 542
BspMI ACCTGC 2 cut(s) 78, 160
BspPI GGATC 2 cut(s) 188, 379
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 5 cut(s) 106, 180, 210, 308, 371
Bst4CI ACNGT 1 cut(s) 473
Bst6I CTCTTC 1 cut(s) 266
BstDEI CTNAG 1 cut(s) 500
BstF5I GGATG 3 cut(s) 23, 37, 292
BstKTI GATC 5 cut(s) 109, 183, 213, 311, 374
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 5 cut(s) 106, 180, 210, 308, 371
BstMWI GCNNNNNNNGC 2 cut(s) 79, 510
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 1 cut(s) 53
BstSFI CTRYAG 2 cut(s) 102, 162
BstSLI GKGCMC 1 cut(s) 300
BstV1I GCAGC 1 cut(s) 62
BstV2I GAAGAC 1 cut(s) 449
BstX2I RGATCY 2 cut(s) 180, 371
BstYI RGATCY 2 cut(s) 180, 371
BtsCI GGATG 3 cut(s) 23, 37, 292
BveI ACCTGC 2 cut(s) 78, 160
Cfr13I GGNCC 2 cut(s) 153, 276
Csp6I GTAC 1 cut(s) 202
CviAII CATG 6 cut(s) 70, 293, 301, 412, 416, 439
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 1 cut(s) 500
DpnI GATC 5 cut(s) 108, 182, 212, 310, 373
DpnII GATC 5 cut(s) 106, 180, 210, 308, 371
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
Ecl136II GAGCTC 1 cut(s) 499
Eco24I GRGCYC 2 cut(s) 256, 501
Eco47I GGWCC 2 cut(s) 153, 276
Eco53kI GAGCTC 1 cut(s) 499
Eco88I CYCGRG 1 cut(s) 255
EcoICRI GAGCTC 1 cut(s) 499
EcoO109I RGGNCCY 1 cut(s) 153
EcoT22I ATGCAT 1 cut(s) 417
EcoT38I GRGCYC 2 cut(s) 256, 501
FaeI CATG 6 cut(s) 73, 296, 304, 415, 419, 442
FaqI GGGAC 1 cut(s) 139
FatI CATG 6 cut(s) 69, 292, 300, 411, 415, 438
Fnu4HI GCNGC 2 cut(s) 51, 544
FokI GGATG 3 cut(s) 10, 44, 299
FriOI GRGCYC 2 cut(s) 256, 501
Fsp4HI GCNGC 2 cut(s) 51, 544
GluI GCNGC 2 cut(s) 51, 544
GsuI CTGGAG 1 cut(s) 173
HapII CCGG 2 cut(s) 54, 538
Hin1II CATG 6 cut(s) 73, 296, 304, 415, 419, 442
HinfI GANTC 2 cut(s) 94, 117
HpaII CCGG 2 cut(s) 54, 538
HphI GGTGA 1 cut(s) 431
Hpy166II GTNNAC 3 cut(s) 93, 244, 279
Hpy188I TCNGA 5 cut(s) 28, 111, 177, 286, 454
Hpy188III TCNNGA 4 cut(s) 220, 241, 257, 538
Hpy8I GTNNAC 3 cut(s) 93, 244, 279
HpyAV CCTTC 1 cut(s) 407
HpyCH4III ACNGT 1 cut(s) 473
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 2 cut(s) 304, 415
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 510
HpyF3I CTNAG 1 cut(s) 500
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 6 cut(s) 73, 296, 304, 415, 419, 442
Kpn2I TCCGGA 1 cut(s) 537
Kzo9I GATC 5 cut(s) 106, 180, 210, 308, 371
LmnI GCTCC 2 cut(s) 127, 540
Lsp1109I GCAGC 1 cut(s) 62
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 1 cut(s) 467
MalI GATC 5 cut(s) 108, 182, 212, 310, 373
MboI GATC 5 cut(s) 106, 180, 210, 308, 371
MboII GAAGA 3 cut(s) 280, 283, 454
MflI RGATCY 2 cut(s) 180, 371
MhlI GDGCHC 3 cut(s) 256, 300, 501
MlyI GAGTC 1 cut(s) 88
MnlI CCTC 9 cut(s) 22, 29, 131, 171, 267, 411, 415, 452, 508
Mph1103I ATGCAT 1 cut(s) 417
MroI TCCGGA 1 cut(s) 537
MroXI GAANNNNTTC 1 cut(s) 396
MseI TTAA 1 cut(s) 339
MslI CAYNNNNRTG 1 cut(s) 474
MspA1I CMGCKG 2 cut(s) 193, 546
MspI CCGG 2 cut(s) 54, 538
MspR9I CCNGG 1 cut(s) 55
MwoI GCNNNNNNNGC 2 cut(s) 79, 510
NciI CCSGG 1 cut(s) 55
NdeII GATC 5 cut(s) 106, 180, 210, 308, 371
NlaIII CATG 6 cut(s) 73, 296, 304, 415, 419, 442
NlaIV GGNNCC 3 cut(s) 6, 155, 542
NmuCI GTSAC 1 cut(s) 467
NsiI ATGCAT 1 cut(s) 417
NspI RCATGY 1 cut(s) 73
OliI CACNNNNGTG 1 cut(s) 474
PaqCI CACCTGC 1 cut(s) 78
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PdmI GAANNNNTTC 1 cut(s) 396
PfeI GAWTC 1 cut(s) 117
PkrI GCNGC 2 cut(s) 52, 545
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
PpuMI RGGWCCY 1 cut(s) 153
Psp124BI GAGCTC 1 cut(s) 501
Psp5II RGGWCCY 1 cut(s) 153
PspN4I GGNNCC 3 cut(s) 6, 155, 542
PspPI GGNCC 2 cut(s) 153, 276
PspPPI RGGWCCY 1 cut(s) 153
PsuI RGATCY 2 cut(s) 180, 371
PvuII CAGCTG 1 cut(s) 193
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
RseI CAYNNNNRTG 1 cut(s) 474
SacI GAGCTC 1 cut(s) 501
SaqAI TTAA 1 cut(s) 339
SatI GCNGC 2 cut(s) 51, 544
Sau3AI GATC 5 cut(s) 106, 180, 210, 308, 371
Sau96I GGNCC 2 cut(s) 153, 276
SchI GAGTC 1 cut(s) 88
ScrFI CCNGG 1 cut(s) 55
SduI GDGCHC 3 cut(s) 256, 300, 501
SfcI CTRYAG 2 cut(s) 102, 162
SinI GGWCC 2 cut(s) 153, 276
SmiMI CAYNNNNRTG 1 cut(s) 474
SmlI CTYRAG 2 cut(s) 122, 494
SmoI CTYRAG 2 cut(s) 122, 494
SsiI CCGC 2 cut(s) 465, 544
SstI GAGCTC 1 cut(s) 501
StyD4I CCNGG 1 cut(s) 53
TaaI ACNGT 1 cut(s) 473
TaiI ACGT 1 cut(s) 228
TaqI TCGA 1 cut(s) 213
TauI GCSGC 1 cut(s) 546
TfiI GAWTC 1 cut(s) 117
Tru1I TTAA 1 cut(s) 339
Tru9I TTAA 1 cut(s) 339
TseFI GTSAC 1 cut(s) 467
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 467
TspDTI ATGAA 3 cut(s) 281, 392, 455
VpaK11BI GGWCC 2 cut(s) 153, 276
XceI RCATGY 1 cut(s) 73
XmnI GAANNNNTTC 1 cut(s) 396
Zsp2I ATGCAT 1 cut(s) 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.