Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010683

Physical Location & Seq

Genomic Coordinates Reverse (-)

1331466 .. 1333651

Gene Structure 2186 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G04750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCGCAACAATCGTTGATCTACAGTTTCGTAGCTCGCGGCACGGTGATCCTCGTTGAGTTCACTGATTTCAAAGGTAATTTCACCTCAATCGCTGCTCAGTGCCTCCAGAAGCTTCCGTCTTCGAACAACAAGTTCACCTACAACTGCGACGGTCATACCTTCAATTACCTTGTCGAAGATGGATTCACCTATTGTGTTGTTGCGGTTGATTCTGCTGGGAGGCAAATTCCCATGTCCTTTTTGGAAAGAGTAAAAGAAGATTTTAACAAGCGATATGGTGGTGGAAAGGCTGCAACTGCTCAAGCAAACAGCTTGAATAAGGAGTTTGGCTCTAAACTGAAAGAGCATATGCAGTATTGCATGGATCATCCTGATGAGATTAGCAAGCTTGCTAAGGTGAAGGCGCAAGTGTCAGAAGTTAAGGGTGTAATGATGGAAAACATTGAGAAGGTTCTTGACCGTGGTGAGAAAATTGAGCTTTTGGTGGACAAAACCGAAAATCTTCGCTCACAGGCACAAGATTTCAGAACAACAGGAACGCAGATGAGAAGAAAGATGTGGCTTCAGAACATGAAGATAAAACTCATAGTGCTCGCCATCATTATCGCACTGATTCTCATCATCGTGCTCTCAGTTTGCCATGGGTTTAAGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005886 GO:0005911 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0007049 GO:0008150 GO:0009504 GO:0009506 GO:0009507 GO:0009536 GO:0009832 GO:0009920 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0022402 GO:0022607 GO:0030054 GO:0031201 GO:0031410 GO:0031982 GO:0032506 GO:0032940 GO:0032991 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0048285 GO:0051179 GO:0051234 GO:0051301 GO:0055044 GO:0061024 GO:0061025 GO:0061640 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0090174 GO:0097708 GO:0098796 GO:0140014 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

219

Amino Acids

24.76

Weight (kDa)

8.96

Isoelectric Point (pI)

35.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Longin	PF13774	32 - 111	3.2e-23	Regulated-SNARE-like domain
Synaptobrevin	PF00957	130 - 210	7.2e-30	Synaptobrevin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010683)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04750 AT1G04760 AT1G04760 AT2G32670 AT2G33120 AT2G33120
fragaria_vesca	FvH4_3g12050
malus_domestica	MD05G1255000.v1.1 MD10G1235100.v1.1
prunus_persica	Prupe.4G108800_v2.0.a1
pyrus_communis	pycom05g23320 pycom10g19680
rosa_chinensis	RchiOBHm_Chr5g0019761
rosa_laevigata	RLG00000032466
rosa_multiflora	Rmu_ssc0000062.1_g000027
rosa_roxburghii	Rroxscaffold_1G00058370
rosa_rugosa	Rorug05G0053600
rosa_samantha	Rh5AG144200 Rh5BG142900
rosa_wichuraiana	Rw5G012750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	39
AciI	CCGC	2 cut(s)	39, 206
AclWI	GGATC	2 cut(s)	43, 375
AcsI	RAATTY	1 cut(s)	228
AcuI	CTGAAG	1 cut(s)	551
AgsI	TTSAA	3 cut(s)	73, 166, 319
AluBI	AGCT	5 cut(s)	35, 115, 315, 391, 481
AluI	AGCT	5 cut(s)	35, 115, 315, 391, 481
Alw21I	GWGCWC	2 cut(s)	597, 633
AlwI	GGATC	2 cut(s)	43, 375
ApeKI	GCWGC	2 cut(s)	95, 293
ApoI	RAATTY	1 cut(s)	228
Asp700I	GAANNNNTTC	1 cut(s)	504
AspLEI	GCGC	2 cut(s)	7, 409
AsuHPI	GGTGA	6 cut(s)	58, 76, 130, 181, 412, 479
AsuII	TTCGAA	1 cut(s)	125
BbsI	GAAGAC	1 cut(s)	114
Bbv12I	GWGCWC	2 cut(s)	597, 633
BbvI	GCAGC	2 cut(s)	82, 280
BccI	CCATC	3 cut(s)	176, 430, 608
BfmI	CTRYAG	1 cut(s)	22
BisI	GCNGC	3 cut(s)	40, 96, 294
BlsI	GCNGC	3 cut(s)	41, 97, 295
BpiI	GAAGAC	1 cut(s)	114
BplI	GAGNNNNNCTC	2 cut(s)	317, 349
BpmI	CTGGAG	1 cut(s)	92
Bpu10I	CCTNAGC	1 cut(s)	396
Bpu14I	TTCGAA	1 cut(s)	125
BpuEI	CTTGAG	1 cut(s)	288
BsaBI	GATNNNNATC	1 cut(s)	620
BsaJI	CCNNGG	2 cut(s)	463, 643
Bse8I	GATNNNNATC	1 cut(s)	620
BseDI	CCNNGG	2 cut(s)	463, 643
BseGI	GGATG	1 cut(s)	370
BseJI	GATNNNNATC	1 cut(s)	620
BseMII	CTCAG	2 cut(s)	113, 648
BseXI	GCAGC	2 cut(s)	82, 280
BseYI	CCCAGC	1 cut(s)	218
Bsh1236I	CGCG	1 cut(s)	39
BsiHKAI	GWGCWC	2 cut(s)	597, 633
Bsp119I	TTCGAA	1 cut(s)	125
Bsp1286I	GDGCHC	2 cut(s)	597, 633
Bsp143I	GATC	3 cut(s)	18, 48, 367
Bsp19I	CCATGG	1 cut(s)	643
BspACI	CCGC	2 cut(s)	39, 206
BspCNI	CTCAG	2 cut(s)	112, 647
BspFNI	CGCG	1 cut(s)	39
BspPI	GGATC	2 cut(s)	43, 375
BspT104I	TTCGAA	1 cut(s)	125
BssECI	CCNNGG	2 cut(s)	463, 643
BssMI	GATC	3 cut(s)	18, 48, 367
BssT1I	CCWWGG	1 cut(s)	643
Bst4CI	ACNGT	4 cut(s)	26, 46, 155, 464
BstBI	TTCGAA	1 cut(s)	125
BstC8I	GCNNGC	4 cut(s)	37, 389, 393, 597
BstDEI	CTNAG	3 cut(s)	99, 396, 634
BstDSI	CCRYGG	2 cut(s)	463, 643
BstF5I	GGATG	1 cut(s)	370
BstFNI	CGCG	1 cut(s)	39
BstHHI	GCGC	2 cut(s)	7, 409
BstKTI	GATC	3 cut(s)	21, 51, 370
BstMBI	GATC	3 cut(s)	18, 48, 367
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstSFI	CTRYAG	1 cut(s)	22
BstUI	CGCG	1 cut(s)	39
BstV1I	GCAGC	2 cut(s)	82, 280
BstV2I	GAAGAC	1 cut(s)	114
BtgI	CCRYGG	2 cut(s)	463, 643
BtsCI	GGATG	1 cut(s)	370
BtsIMutI	CAGTG	3 cut(s)	63, 107, 611
Cac8I	GCNNGC	4 cut(s)	37, 389, 393, 597
CfoI	GCGC	2 cut(s)	7, 409
CviAII	CATG	4 cut(s)	235, 364, 574, 644
CviJI	RGCY	8 cut(s)	35, 115, 293, 315, 333, 391, 481, 565
CviKI_1	RGCY	8 cut(s)	35, 115, 293, 315, 333, 391, 481, 565
DdeI	CTNAG	3 cut(s)	99, 396, 634
DpnI	GATC	3 cut(s)	20, 50, 369
DpnII	GATC	3 cut(s)	18, 48, 367
Eco130I	CCWWGG	1 cut(s)	643
Eco57I	CTGAAG	1 cut(s)	551
EcoT14I	CCWWGG	1 cut(s)	643
ErhI	CCWWGG	1 cut(s)	643
FaeI	CATG	4 cut(s)	238, 367, 577, 647
FaiI	YATR	9 cut(s)	159, 236, 279, 351, 353, 365, 575, 590, 645
FatI	CATG	4 cut(s)	234, 363, 573, 643
FauNDI	CATATG	1 cut(s)	351
Fnu4HI	GCNGC	3 cut(s)	40, 96, 294
FokI	GGATG	1 cut(s)	357
Fsp4HI	GCNGC	3 cut(s)	40, 96, 294
GlaI	GCGC	2 cut(s)	6, 408
GluI	GCNGC	3 cut(s)	40, 96, 294
GsaI	CCCAGC	1 cut(s)	222
GsuI	CTGGAG	1 cut(s)	92
HhaI	GCGC	2 cut(s)	7, 409
Hin1II	CATG	4 cut(s)	238, 367, 577, 647
Hin6I	GCGC	2 cut(s)	5, 407
HinP1I	GCGC	2 cut(s)	5, 407
HindIII	AAGCTT	2 cut(s)	113, 389
HinfI	GANTC	3 cut(s)	186, 212, 616
HphI	GGTGA	6 cut(s)	58, 76, 130, 181, 412, 479
Hpy166II	GTNNAC	3 cut(s)	63, 138, 490
Hpy188I	TCNGA	3 cut(s)	418, 530, 570
Hpy188III	TCNNGA	3 cut(s)	109, 374, 458
Hpy8I	GTNNAC	3 cut(s)	63, 138, 490
Hpy99I	CGWCG	1 cut(s)	155
HpyAV	CCTTC	3 cut(s)	172, 397, 445
HpyCH4III	ACNGT	4 cut(s)	26, 46, 155, 464
HpyCH4V	TGCA	3 cut(s)	296, 355, 363
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
HpyF3I	CTNAG	3 cut(s)	99, 396, 634
Hsp92II	CATG	4 cut(s)	238, 367, 577, 647
HspAI	GCGC	2 cut(s)	5, 407
Kzo9I	GATC	3 cut(s)	18, 48, 367
LpnPI	CCDG	5 cut(s)	122, 204, 387, 500, 522
Lsp1109I	GCAGC	2 cut(s)	82, 280
MalI	GATC	3 cut(s)	20, 50, 369
MboI	GATC	3 cut(s)	18, 48, 367
MboII	GAAGA	6 cut(s)	114, 191, 272, 497, 564, 589
MhlI	GDGCHC	2 cut(s)	597, 633
MluCI	AATT	4 cut(s)	79, 166, 228, 474
MnlI	CCTC	4 cut(s)	62, 97, 116, 216
MroXI	GAANNNNTTC	1 cut(s)	504
MseI	TTAA	4 cut(s)	267, 423, 651, 658
MslI	CAYNNNNRTG	2 cut(s)	375, 626
MvnI	CGCG	1 cut(s)	39
MwoI	GCNNNNNNNGC	1 cut(s)	299
NcoI	CCATGG	1 cut(s)	643
NdeI	CATATG	1 cut(s)	351
NdeII	GATC	3 cut(s)	18, 48, 367
NlaIII	CATG	4 cut(s)	238, 367, 577, 647
NspV	TTCGAA	1 cut(s)	125
PdmI	GAANNNNTTC	1 cut(s)	504
PfeI	GAWTC	3 cut(s)	186, 212, 616
PkrI	GCNGC	3 cut(s)	41, 97, 295
PspFI	CCCAGC	1 cut(s)	218
RseI	CAYNNNNRTG	2 cut(s)	375, 626
SaqAI	TTAA	4 cut(s)	267, 423, 651, 658
SatI	GCNGC	3 cut(s)	40, 96, 294
Sau3AI	GATC	3 cut(s)	18, 48, 367
SduI	GDGCHC	2 cut(s)	597, 633
SfcI	CTRYAG	1 cut(s)	22
SfuI	TTCGAA	1 cut(s)	125
SmiMI	CAYNNNNRTG	2 cut(s)	375, 626
SmlI	CTYRAG	1 cut(s)	303
SmoI	CTYRAG	1 cut(s)	303
Sse9I	AATT	4 cut(s)	79, 166, 228, 474
SsiI	CCGC	2 cut(s)	39, 206
StyI	CCWWGG	1 cut(s)	643
TaaI	ACNGT	4 cut(s)	26, 46, 155, 464
TaqI	TCGA	2 cut(s)	125, 177
TasI	AATT	4 cut(s)	79, 166, 228, 474
TauI	GCSGC	1 cut(s)	42
TfiI	GAWTC	3 cut(s)	186, 212, 616
Tru1I	TTAA	4 cut(s)	267, 423, 651, 658
Tru9I	TTAA	4 cut(s)	267, 423, 651, 658
TscAI	CASTG	3 cut(s)	70, 107, 618
TseI	GCWGC	2 cut(s)	95, 293
TspDTI	ATGAA	1 cut(s)	590
TspGWI	ACGGA	1 cut(s)	108
TspRI	CASTG	3 cut(s)	70, 107, 618
XapI	RAATTY	1 cut(s)	228
XcmI	CCANNNNNNNNNTGG	1 cut(s)	241
XmnI	GAANNNNTTC	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.