Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010683

Physical Location & Seq

Genomic Coordinates Reverse (-)

14043400 .. 14045695

Gene Structure 2296 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G33120.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCGCAACAATCGTTGATCTACAGTTTCGTCGCTCGTGGTACCGTTATCCTCGTTGAGTTCACAGATTTCAAAGGCAATTTCACATCAATCGCTGCTCAGTGCCTTCAGAAGCTTCCTTCTTCTAACAACAAGTTTACCTACAACTGCGATGGTCACACGTTCAATTACCTCGTCGAAAATGGATTCACCTATTGTGTTGTTGCAGTTGATTCTGCTGGGAGGCAGATTCCTATGGCTTTCTTGGAACGAGTTAAGGAGGATTTCAACAAGAGATATGGTGGTGGAAAGGCTGCAACTGCTCAAGCAAACAGCTTGAATAAAGAATTTGGGTCGAAACTGAAAGAGCATATGCAGTATTGCATGGATCATCCTGATGAGATTAGCAAGCTTGCTAAGGTTAAAGCTCAAGTGTCTGAAGTTAAAGGTGTTATGATGGAAAACATTGAGAAGGTTCTTGACCGTGGTGAGAAGATTGAGCTTTTGGTTGACAAAACAGAAAACCTTCGCTCACAGGCGCAAGATTTTAGAACACAAGGAACTCAAATGAGAAGAAAGATGTGGTTTCAGAACATGAAGATAAAGCTCATTGTCCTTGCAATTATCATTGCCTTGATTCTCATCATCATCCTCTCAATTTGTGGGGGATTCAACTGCGGTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

221

Amino Acids

24.93

Weight (kDa)

9.07

Isoelectric Point (pI)

31.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Longin	PF13774	32 - 119	4.5e-19	Regulated-SNARE-like domain
Synaptobrevin	PF00957	138 - 218	3.5e-30	Synaptobrevin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010683)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04750 AT1G04760 AT1G04760 AT2G32670 AT2G33120 AT2G33120
fragaria_vesca	FvH4_3g12050
malus_domestica	MD05G1255000.v1.1 MD10G1235100.v1.1
prunus_persica	Prupe.4G108800_v2.0.a1
pyrus_communis	pycom05g23320 pycom10g19680
rosa_chinensis	RchiOBHm_Chr5g0019761
rosa_laevigata	RLG00000032466
rosa_multiflora	Rmu_ssc0000062.1_g000027
rosa_roxburghii	Rroxscaffold_1G00058370
rosa_rugosa	Rorug05G0053600
rosa_samantha	Rh5AG144200 Rh5BG142900
rosa_wichuraiana	Rw5G012750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	41
AccB1I	GGYRCC	1 cut(s)	41
AciI	CCGC	1 cut(s)	657
AclWI	GGATC	1 cut(s)	375
AcsI	RAATTY	1 cut(s)	326
AcuI	CTGAAG	2 cut(s)	92, 438
AfaI	GTAC	1 cut(s)	43
AflIII	ACRYGT	1 cut(s)	159
AgsI	TTSAA	5 cut(s)	73, 166, 268, 319, 652
AluBI	AGCT	6 cut(s)	115, 315, 391, 407, 481, 586
AluI	AGCT	6 cut(s)	115, 315, 391, 407, 481, 586
AlwI	GGATC	1 cut(s)	375
ApeKI	GCWGC	2 cut(s)	95, 293
ApoI	RAATTY	1 cut(s)	326
Asp700I	GAANNNNTTC	1 cut(s)	504
Asp718I	GGTACC	1 cut(s)	41
AspLEI	GCGC	2 cut(s)	7, 520
AsuHPI	GGTGA	2 cut(s)	181, 479
BanI	GGYRCC	1 cut(s)	41
BauI	CACGAG	1 cut(s)	36
BbvI	GCAGC	2 cut(s)	82, 280
BccI	CCATC	2 cut(s)	146, 430
BfmI	CTRYAG	1 cut(s)	22
BisI	GCNGC	2 cut(s)	96, 294
BlsI	GCNGC	2 cut(s)	97, 295
BmiI	GGNNCC	1 cut(s)	43
Bpu10I	CCTNAGC	1 cut(s)	396
BpuEI	CTTGAG	2 cut(s)	288, 393
BsaBI	GATNNNNATC	1 cut(s)	620
BsaJI	CCNNGG	1 cut(s)	463
Bse3DI	GCAATG	1 cut(s)	606
Bse8I	GATNNNNATC	1 cut(s)	620
BseDI	CCNNGG	1 cut(s)	463
BseGI	GGATG	2 cut(s)	370, 627
BseJI	GATNNNNATC	1 cut(s)	620
BseMI	GCAATG	1 cut(s)	606
BseMII	CTCAG	1 cut(s)	113
BseXI	GCAGC	2 cut(s)	82, 280
BseYI	CCCAGC	1 cut(s)	218
BshNI	GGYRCC	1 cut(s)	41
Bsp143I	GATC	2 cut(s)	18, 367
BspACI	CCGC	1 cut(s)	657
BspCNI	CTCAG	1 cut(s)	112
BspLI	GGNNCC	1 cut(s)	43
BspPI	GGATC	1 cut(s)	375
BspT107I	GGYRCC	1 cut(s)	41
BsrDI	GCAATG	1 cut(s)	606
BssECI	CCNNGG	1 cut(s)	463
BssMI	GATC	2 cut(s)	18, 367
BssSI	CACGAG	1 cut(s)	36
Bst2BI	CACGAG	1 cut(s)	36
Bst4CI	ACNGT	3 cut(s)	26, 46, 464
BstC8I	GCNNGC	2 cut(s)	389, 393
BstDEI	CTNAG	2 cut(s)	99, 396
BstDSI	CCRYGG	1 cut(s)	463
BstF5I	GGATG	2 cut(s)	370, 627
BstHHI	GCGC	2 cut(s)	7, 520
BstKTI	GATC	2 cut(s)	21, 370
BstMBI	GATC	2 cut(s)	18, 367
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstSFI	CTRYAG	1 cut(s)	22
BstV1I	GCAGC	2 cut(s)	82, 280
BtgI	CCRYGG	1 cut(s)	463
BtgZI	GCGATG	1 cut(s)	165
BtsCI	GGATG	2 cut(s)	370, 627
BtsIMutI	CAGTG	1 cut(s)	107
Cac8I	GCNNGC	2 cut(s)	389, 393
CfoI	GCGC	2 cut(s)	7, 520
Csp6I	GTAC	1 cut(s)	42
CviAII	CATG	2 cut(s)	364, 574
CviJI	RGCY	8 cut(s)	115, 239, 293, 315, 391, 407, 481, 586
CviKI_1	RGCY	8 cut(s)	115, 239, 293, 315, 391, 407, 481, 586
CviQI	GTAC	1 cut(s)	42
DdeI	CTNAG	2 cut(s)	99, 396
DpnI	GATC	2 cut(s)	20, 369
DpnII	GATC	2 cut(s)	18, 367
Eco57I	CTGAAG	2 cut(s)	92, 438
FaeI	CATG	2 cut(s)	367, 577
FaiI	YATR	7 cut(s)	236, 279, 351, 353, 365, 434, 575
FatI	CATG	2 cut(s)	363, 573
FauNDI	CATATG	1 cut(s)	351
Fnu4HI	GCNGC	2 cut(s)	96, 294
FokI	GGATG	2 cut(s)	357, 614
Fsp4HI	GCNGC	2 cut(s)	96, 294
GlaI	GCGC	2 cut(s)	6, 519
GluI	GCNGC	2 cut(s)	96, 294
GsaI	CCCAGC	1 cut(s)	222
HhaI	GCGC	2 cut(s)	7, 520
Hin1II	CATG	2 cut(s)	367, 577
Hin6I	GCGC	2 cut(s)	5, 518
HinP1I	GCGC	2 cut(s)	5, 518
HincII	GTYRAC	1 cut(s)	490
HindII	GTYRAC	1 cut(s)	490
HindIII	AAGCTT	2 cut(s)	113, 389
HinfI	GANTC	5 cut(s)	186, 212, 229, 616, 648
HphI	GGTGA	2 cut(s)	181, 479
Hpy166II	GTNNAC	3 cut(s)	63, 138, 490
Hpy188I	TCNGA	3 cut(s)	111, 418, 570
Hpy188III	TCNNGA	2 cut(s)	374, 458
Hpy8I	GTNNAC	3 cut(s)	63, 138, 490
Hpy99I	CGWCG	2 cut(s)	35, 179
HpyAV	CCTTC	4 cut(s)	116, 129, 445, 515
HpyCH4III	ACNGT	3 cut(s)	26, 46, 464
HpyCH4IV	ACGT	1 cut(s)	161
HpyCH4V	TGCA	5 cut(s)	206, 296, 355, 363, 599
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
HpyF3I	CTNAG	2 cut(s)	99, 396
HpySE526I	ACGT	1 cut(s)	161
Hsp92II	CATG	2 cut(s)	367, 577
HspAI	GCGC	2 cut(s)	5, 518
KpnI	GGTACC	1 cut(s)	45
Kzo9I	GATC	2 cut(s)	18, 367
LpnPI	CCDG	3 cut(s)	204, 387, 500
Lsp1109I	GCAGC	2 cut(s)	82, 280
MaeII	ACGT	1 cut(s)	161
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	2 cut(s)	20, 369
MboI	GATC	2 cut(s)	18, 367
MboII	GAAGA	4 cut(s)	114, 484, 564, 589
MluCI	AATT	5 cut(s)	79, 166, 326, 600, 636
MnlI	CCTC	5 cut(s)	62, 182, 216, 253, 641
MroXI	GAANNNNTTC	1 cut(s)	504
MseI	TTAA	3 cut(s)	255, 402, 423
MslI	CAYNNNNRTG	1 cut(s)	375
MwoI	GCNNNNNNNGC	1 cut(s)	299
NdeI	CATATG	1 cut(s)	351
NdeII	GATC	2 cut(s)	18, 367
NlaIII	CATG	2 cut(s)	367, 577
NlaIV	GGNNCC	1 cut(s)	43
NmuCI	GTSAC	1 cut(s)	155
PdmI	GAANNNNTTC	1 cut(s)	504
PfeI	GAWTC	5 cut(s)	186, 212, 229, 616, 648
PkrI	GCNGC	2 cut(s)	97, 295
PspFI	CCCAGC	1 cut(s)	218
PspN4I	GGNNCC	1 cut(s)	43
RsaI	GTAC	1 cut(s)	43
RsaNI	GTAC	1 cut(s)	42
RseI	CAYNNNNRTG	1 cut(s)	375
SaqAI	TTAA	3 cut(s)	255, 402, 423
SatI	GCNGC	2 cut(s)	96, 294
Sau3AI	GATC	2 cut(s)	18, 367
SfcI	CTRYAG	1 cut(s)	22
SmiMI	CAYNNNNRTG	1 cut(s)	375
SmlI	CTYRAG	2 cut(s)	303, 408
SmoI	CTYRAG	2 cut(s)	303, 408
Sse9I	AATT	5 cut(s)	79, 166, 326, 600, 636
SsiI	CCGC	1 cut(s)	657
TaaI	ACNGT	3 cut(s)	26, 46, 464
TaiI	ACGT	1 cut(s)	164
TaqI	TCGA	2 cut(s)	177, 335
TasI	AATT	5 cut(s)	79, 166, 326, 600, 636
TfiI	GAWTC	5 cut(s)	186, 212, 229, 616, 648
Tru1I	TTAA	3 cut(s)	255, 402, 423
Tru9I	TTAA	3 cut(s)	255, 402, 423
TscAI	CASTG	1 cut(s)	107
TseFI	GTSAC	1 cut(s)	155
TseI	GCWGC	2 cut(s)	95, 293
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	1 cut(s)	590
TspRI	CASTG	1 cut(s)	107
XapI	RAATTY	1 cut(s)	326
XmnI	GAANNNNTTC	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.