Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010683

Physical Location & Seq

Genomic Coordinates Forward (+)

13857877 .. 13859774

Gene Structure 1898 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G32670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGATCGCAGCGTCGTCCCTATATCTCTCGCTCCCTTTCAATTTCTCCTTGTATTTTGGATCTTTCTTACTTCCGTACACACAAACCCAAACAAACAACAAAAAACTGTTGTCTCTCTCTCTCTTTGGTGGAATTCAAAAAATCGAATTCGTGGTTGCGTTTGGTTTTTCTTCCTTCTTCGGGTCACGAGAACAATGGGACAACAAAATTTGATCTACAGCTTCGTCGCTCGTGGTACGGTGATTCTCGTCGAGTATACAGAATTCAAAGGAAATTTCACTGCCGTCGCTGCACAGTGTCTCCAAAAGCTTCCTTCTTCGAATAACAAGTTTACATACAATTGCGACGGACACACGTTCAATTACCTCGTCGAGAATGGCTTCACGTATTGTGTTGTTGCTGTTGAATCTGTTGGGAGGCAGATTCCTATGGCTTTCTTGGAGAGAGTTAAGGAAGATTTCAACAAGAGATATGGTGGTGGTAAGGCTACCACTGCTCAAGCCAACAGCTTAAACAGAGAGTTTGGGTCGAAACTGAAGGAGCACATGCAGTACTGTGTGGATCATCCTGACGAGATTAGCAAACTTGCCAAAGTTAAGGCTCAGGTTACTGAGGTGAAGGGTGTTATGATGGAGAACATTGAGAAGGTCCTTGACCGTGGTGAGAAAATTGAGCTTCTAGTTGACAAAACTGAGAACCTTCGTTCACAGGCACAAGATTTCAGAACACAAGGAACAAAAATAAGAAGAAAGATGTGGTTTGAAAACATGAAGATTAAGCTCATAGTCCTCGGTATCATCATTACCTTGATTCTCATCATCATCCTCTCTGTTTGCGGGGGATTCAAGTGTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005886 GO:0005911 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0007049 GO:0008150 GO:0009504 GO:0009506 GO:0009507 GO:0009536 GO:0009832 GO:0009920 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0022402 GO:0022607 GO:0030054 GO:0031201 GO:0031410 GO:0031982 GO:0032506 GO:0032940 GO:0032991 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0048285 GO:0051179 GO:0051234 GO:0051301 GO:0055044 GO:0061024 GO:0061025 GO:0061640 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0090174 GO:0097708 GO:0098796 GO:0140014 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

285

Amino Acids

32.69

Weight (kDa)

9.53

Isoelectric Point (pI)

29.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Longin	PF13774	97 - 176	4.9e-23	Regulated-SNARE-like domain
Synaptobrevin	PF00957	195 - 275	5.6e-30	Synaptobrevin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010683)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04750 AT1G04760 AT1G04760 AT2G32670 AT2G33120 AT2G33120
fragaria_vesca	FvH4_3g12050
malus_domestica	MD05G1255000.v1.1 MD10G1235100.v1.1
prunus_persica	Prupe.4G108800_v2.0.a1
pyrus_communis	pycom05g23320 pycom10g19680
rosa_chinensis	RchiOBHm_Chr5g0019761
rosa_laevigata	RLG00000032466
rosa_multiflora	Rmu_ssc0000062.1_g000027
rosa_roxburghii	Rroxscaffold_1G00058370
rosa_rugosa	Rorug05G0053600
rosa_samantha	Rh5AG144200 Rh5BG142900
rosa_wichuraiana	Rw5G012750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	257
AciI	CCGC	1 cut(s)	837
AclWI	GGATC	3 cut(s)	12, 68, 570
AcsI	RAATTY	5 cut(s)	133, 147, 208, 263, 274
AcuI	CTGAAG	1 cut(s)	557
AfaI	GTAC	4 cut(s)	78, 238, 554, 853
AfiI	CCNNNNNNNGG	1 cut(s)	181
AflIII	ACRYGT	1 cut(s)	354
AgsI	TTSAA	8 cut(s)	41, 138, 268, 361, 407, 463, 764, 847
AluBI	AGCT	5 cut(s)	222, 310, 510, 676, 781
AluI	AGCT	5 cut(s)	222, 310, 510, 676, 781
Alw21I	GWGCWC	1 cut(s)	546
Alw26I	GTCTC	2 cut(s)	118, 305
AlwI	GGATC	3 cut(s)	12, 68, 570
ApeKI	GCWGC	2 cut(s)	9, 290
ApoI	RAATTY	5 cut(s)	133, 147, 208, 263, 274
Asp700I	GAANNNNTTC	1 cut(s)	380
AspS9I	GGNCC	1 cut(s)	649
AsuHPI	GGTGA	3 cut(s)	253, 628, 674
AsuII	TTCGAA	1 cut(s)	320
AvaII	GGWCC	1 cut(s)	649
BauI	CACGAG	2 cut(s)	187, 231
Bbv12I	GWGCWC	1 cut(s)	546
BbvI	GCAGC	2 cut(s)	21, 277
BccI	CCATC	1 cut(s)	625
BceAI	ACGGC	1 cut(s)	269
BcoDI	GTCTC	2 cut(s)	118, 305
BfaI	CTAG	1 cut(s)	680
BfmI	CTRYAG	1 cut(s)	217
BisI	GCNGC	2 cut(s)	10, 291
BlsI	GCNGC	2 cut(s)	11, 292
BmcAI	AGTACT	1 cut(s)	554
Bme18I	GGWCC	1 cut(s)	649
BmgT120I	GGNCC	1 cut(s)	649
Bpu10I	CCTNAGC	1 cut(s)	603
Bpu14I	TTCGAA	1 cut(s)	320
BpuEI	CTTGAG	1 cut(s)	483
BsaAI	YACGTR	1 cut(s)	387
BsaBI	GATNNNNATC	1 cut(s)	815
BsaJI	CCNNGG	2 cut(s)	658, 790
BsaXI	ACNNNNNCTCC	2 cut(s)	285, 315
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
Bse8I	GATNNNNATC	1 cut(s)	815
BseDI	CCNNGG	2 cut(s)	658, 790
BseGI	GGATG	2 cut(s)	565, 822
BseJI	GATNNNNATC	1 cut(s)	815
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMII	CTCAG	3 cut(s)	603, 617, 684
BseXI	GCAGC	2 cut(s)	21, 277
BsgI	GTGCAG	1 cut(s)	276
BsiHKAI	GWGCWC	1 cut(s)	546
BslFI	GGGAC	2 cut(s)	2, 213
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmAI	GTCTC	2 cut(s)	118, 305
BsmFI	GGGAC	2 cut(s)	2, 213
Bsp119I	TTCGAA	1 cut(s)	320
Bsp1286I	GDGCHC	1 cut(s)	546
Bsp143I	GATC	4 cut(s)	4, 60, 213, 562
BspACI	CCGC	1 cut(s)	837
BspCNI	CTCAG	3 cut(s)	604, 616, 685
BspPI	GGATC	3 cut(s)	12, 68, 570
BspT104I	TTCGAA	1 cut(s)	320
BssECI	CCNNGG	2 cut(s)	658, 790
BssMI	GATC	4 cut(s)	4, 60, 213, 562
BssNAI	GTATAC	1 cut(s)	258
BssSI	CACGAG	2 cut(s)	187, 231
Bst1107I	GTATAC	1 cut(s)	258
Bst2BI	CACGAG	2 cut(s)	187, 231
Bst4CI	ACNGT	5 cut(s)	109, 241, 297, 557, 659
BstBAI	YACGTR	1 cut(s)	387
BstBI	TTCGAA	1 cut(s)	320
BstDEI	CTNAG	3 cut(s)	603, 612, 693
BstDSI	CCRYGG	1 cut(s)	658
BstF5I	GGATG	2 cut(s)	565, 822
BstKTI	GATC	4 cut(s)	7, 63, 216, 565
BstMAI	GTCTC	2 cut(s)	118, 305
BstMBI	GATC	4 cut(s)	4, 60, 213, 562
BstMWI	GCNNNNNNNGC	2 cut(s)	290, 494
BstNSI	RCATGY	1 cut(s)	550
BstSFI	CTRYAG	1 cut(s)	217
BstV1I	GCAGC	2 cut(s)	21, 277
BstX2I	RGATCY	1 cut(s)	60
BstYI	RGATCY	1 cut(s)	60
BstZ17I	GTATAC	1 cut(s)	258
BtgI	CCRYGG	1 cut(s)	658
BtsCI	GGATG	2 cut(s)	565, 822
BtsI	GCAGTG	2 cut(s)	279, 492
BtsIMutI	CAGTG	3 cut(s)	279, 302, 492
Cfr13I	GGNCC	1 cut(s)	649
Csp6I	GTAC	4 cut(s)	77, 237, 553, 852
CviAII	CATG	2 cut(s)	547, 769
CviQI	GTAC	4 cut(s)	77, 237, 553, 852
DdeI	CTNAG	3 cut(s)	603, 612, 693
DpnI	GATC	4 cut(s)	6, 62, 215, 564
DpnII	GATC	4 cut(s)	4, 60, 213, 562
Eco47I	GGWCC	1 cut(s)	649
Eco57I	CTGAAG	1 cut(s)	557
EcoO109I	RGGNCCY	1 cut(s)	649
EcoRI	GAATTC	3 cut(s)	133, 147, 263
FaeI	CATG	2 cut(s)	550, 772
FaiI	YATR	9 cut(s)	23, 258, 337, 431, 474, 548, 629, 770, 785
FaqI	GGGAC	2 cut(s)	2, 213
FatI	CATG	2 cut(s)	546, 768
FauI	CCCGC	1 cut(s)	830
FblI	GTMKAC	1 cut(s)	257
Fnu4HI	GCNGC	2 cut(s)	10, 291
FokI	GGATG	2 cut(s)	552, 809
Fsp4HI	GCNGC	2 cut(s)	10, 291
FspBI	CTAG	1 cut(s)	680
GluI	GCNGC	2 cut(s)	10, 291
Hin1II	CATG	2 cut(s)	550, 772
HincII	GTYRAC	1 cut(s)	685
HindII	GTYRAC	1 cut(s)	685
HindIII	AAGCTT	1 cut(s)	308
HinfI	GANTC	5 cut(s)	244, 407, 424, 811, 843
HphI	GGTGA	3 cut(s)	253, 628, 674
Hpy166II	GTNNAC	6 cut(s)	79, 258, 333, 685, 707, 852
Hpy188I	TCNGA	1 cut(s)	725
Hpy188III	TCNNGA	3 cut(s)	187, 373, 569
Hpy8I	GTNNAC	6 cut(s)	79, 258, 333, 685, 707, 852
Hpy99I	CGWCG	6 cut(s)	17, 230, 254, 290, 350, 374
HpyAV	CCTTC	6 cut(s)	185, 324, 532, 613, 640, 710
HpyCH4III	ACNGT	5 cut(s)	109, 241, 297, 557, 659
HpyCH4IV	ACGT	2 cut(s)	356, 386
HpyCH4V	TGCA	2 cut(s)	293, 550
HpyF10VI	GCNNNNNNNGC	2 cut(s)	290, 494
HpyF3I	CTNAG	3 cut(s)	603, 612, 693
HpySE526I	ACGT	2 cut(s)	356, 386
Hsp92II	CATG	2 cut(s)	550, 772
Kzo9I	GATC	4 cut(s)	4, 60, 213, 562
LmnI	GCTCC	2 cut(s)	37, 541
LpnPI	CCDG	3 cut(s)	582, 590, 695
Lsp1109I	GCAGC	2 cut(s)	21, 277
MaeI	CTAG	1 cut(s)	680
MaeII	ACGT	2 cut(s)	356, 386
MaeIII	GTNAC	2 cut(s)	184, 607
MalI	GATC	4 cut(s)	6, 62, 215, 564
MboI	GATC	4 cut(s)	4, 60, 213, 562
MboII	GAAGA	6 cut(s)	163, 170, 309, 467, 759, 784
MfeI	CAATTG	1 cut(s)	340
MflI	RGATCY	1 cut(s)	60
MhlI	GDGCHC	1 cut(s)	546
MluCI	AATT	9 cut(s)	41, 133, 147, 208, 263, 274, 340, 361, 669
MnlI	CCTC	5 cut(s)	377, 411, 607, 800, 836
MroXI	GAANNNNTTC	1 cut(s)	380
MseI	TTAA	4 cut(s)	450, 512, 597, 777
MunI	CAATTG	1 cut(s)	340
MwoI	GCNNNNNNNGC	2 cut(s)	290, 494
NdeII	GATC	4 cut(s)	4, 60, 213, 562
NlaIII	CATG	2 cut(s)	550, 772
NmuCI	GTSAC	1 cut(s)	184
NspI	RCATGY	1 cut(s)	550
NspV	TTCGAA	1 cut(s)	320
PdmI	GAANNNNTTC	1 cut(s)	380
PfeI	GAWTC	5 cut(s)	244, 407, 424, 811, 843
PkrI	GCNGC	2 cut(s)	11, 292
Ppu21I	YACGTR	1 cut(s)	387
PpuMI	RGGWCCY	1 cut(s)	649
Psp5II	RGGWCCY	1 cut(s)	649
PspPI	GGNCC	1 cut(s)	649
PspPPI	RGGWCCY	1 cut(s)	649
PsuI	RGATCY	1 cut(s)	60
RsaI	GTAC	4 cut(s)	78, 238, 554, 853
RsaNI	GTAC	4 cut(s)	77, 237, 553, 852
SaqAI	TTAA	4 cut(s)	450, 512, 597, 777
SatI	GCNGC	2 cut(s)	10, 291
Sau3AI	GATC	4 cut(s)	4, 60, 213, 562
Sau96I	GGNCC	1 cut(s)	649
ScaI	AGTACT	1 cut(s)	554
SduI	GDGCHC	1 cut(s)	546
SfcI	CTRYAG	1 cut(s)	217
SfuI	TTCGAA	1 cut(s)	320
SinI	GGWCC	1 cut(s)	649
SmlI	CTYRAG	1 cut(s)	498
SmoI	CTYRAG	1 cut(s)	498
Sse9I	AATT	9 cut(s)	41, 133, 147, 208, 263, 274, 340, 361, 669
SsiI	CCGC	1 cut(s)	837
SspMI	CTAG	1 cut(s)	680
TaaI	ACNGT	5 cut(s)	109, 241, 297, 557, 659
TaiI	ACGT	2 cut(s)	359, 389
TaqI	TCGA	5 cut(s)	145, 252, 320, 372, 530
TasI	AATT	9 cut(s)	41, 133, 147, 208, 263, 274, 340, 361, 669
TatI	WGTACW	1 cut(s)	552
TfiI	GAWTC	5 cut(s)	244, 407, 424, 811, 843
Tru1I	TTAA	4 cut(s)	450, 512, 597, 777
Tru9I	TTAA	4 cut(s)	450, 512, 597, 777
TscAI	CASTG	3 cut(s)	286, 302, 499
TseFI	GTSAC	1 cut(s)	184
TseI	GCWGC	2 cut(s)	9, 290
Tsp45I	GTSAC	1 cut(s)	184
TspDTI	ATGAA	1 cut(s)	785
TspGWI	ACGGA	2 cut(s)	64, 363
TspRI	CASTG	3 cut(s)	286, 302, 499
VpaK11BI	GGWCC	1 cut(s)	649
XapI	RAATTY	5 cut(s)	133, 147, 208, 263, 274
XceI	RCATGY	1 cut(s)	550
XmiI	GTMKAC	1 cut(s)	257
XmnI	GAANNNNTTC	1 cut(s)	380
XspI	CTAG	1 cut(s)	680
ZrmI	AGTACT	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.