Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0010683

Physical Location & Seq

Genomic Coordinates Forward (+)

80202442 .. 80205449

Gene Structure 3008 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00058370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGGCCAGAAGTCGCTGATCTACGCGTTCGTGGCGCGAGGCACTGTGATTCTTGCCGAGTACACCGAATTCAGCGGCAATTTCAACTCCATAGCCTTCCAGTGCCTCCAGAAGCTTCCGGCCACCAACAACAAGTTCACCTACAACTGCGACGGCCACACCTTCAATTACCTCGTCGACAATGGCTACACATACTGTGTGGTGGCAGATGAATCAGTTGGAAGACAAGTGCCTATTGCTTTTCTGGAGCGTGCGAAGGATGATTTTGTTGGGAAATATGGTGGTGGCAAGGCCGCTACAGCTGCTGCCAACAGTCTTAACAAGGAATTTGGGTCAAAATTGAAGGAACATATGCAATACTGTGTTGATCATCCTGAAGAAATAAGCAAGCTTGCTAAGGTTAAGGCCCAGGTTTCAGAAGTTAAAGGTGTTATGATGGAGAACATTGAAAAGGTTTTGGATAGAGGGGAAAAGATAGAGCTTTTGGTTGATAAGACTGAGACTCTTCATCATCAGGCACAGGACTTCCGTAACGTTGGGACTAAAATGAGAAGGAAGATGTGGCTGCAGAATATGAAGGTGAAGCTGATTGTTTTGGGAATTCTGATTGCATTGATCCTCATCATAATCCTCTCTGTTTGCCATGGTTTCAACTGCGGCGGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0097708 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

222

Amino Acids

24.81

Weight (kDa)

8.8

Isoelectric Point (pI)

27.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Longin	PF13774	34 - 111	3.6e-22	Regulated-SNARE-like domain
Synaptobrevin	PF00957	130 - 210	7.6e-29	Synaptobrevin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010683)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04750 AT1G04760 AT1G04760 AT2G32670 AT2G33120 AT2G33120
fragaria_vesca	FvH4_3g12050
malus_domestica	MD05G1255000.v1.1 MD10G1235100.v1.1
prunus_persica	Prupe.4G108800_v2.0.a1
pyrus_communis	pycom05g23320 pycom10g19680
rosa_chinensis	RchiOBHm_Chr5g0019761
rosa_laevigata	RLG00000032466
rosa_multiflora	Rmu_ssc0000062.1_g000027
rosa_roxburghii	Rroxscaffold_1G00058370
rosa_rugosa	Rorug05G0053600
rosa_samantha	Rh5AG144200 Rh5BG142900
rosa_wichuraiana	Rw5G012750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	177
AccII	CGCG	2 cut(s)	26, 37
AciI	CCGC	4 cut(s)	75, 294, 657, 660
AclI	AACGTT	1 cut(s)	534
AclWI	GGATC	1 cut(s)	610
AcoI	YGGCCR	2 cut(s)	120, 154
AcsI	RAATTY	3 cut(s)	68, 326, 600
AcuI	CTGAAG	1 cut(s)	396
AfaI	GTAC	1 cut(s)	62
AflIII	ACRYGT	1 cut(s)	24
AgsI	TTSAA	5 cut(s)	85, 166, 343, 449, 652
AjnI	CCWGG	1 cut(s)	408
AjuI	GAANNNNNNNTTGG	2 cut(s)	119, 151
AluBI	AGCT	5 cut(s)	115, 302, 391, 481, 586
AluI	AGCT	5 cut(s)	115, 302, 391, 481, 586
Alw26I	GTCTC	1 cut(s)	494
AlwI	GGATC	1 cut(s)	610
AlwNI	CAGNNNCTG	1 cut(s)	305
AoxI	GGCC	5 cut(s)	4, 120, 154, 291, 405
ApeKI	GCWGC	3 cut(s)	302, 305, 565
ApoI	RAATTY	3 cut(s)	68, 326, 600
AspLEI	GCGC	1 cut(s)	37
AspS9I	GGNCC	2 cut(s)	4, 406
AsuHPI	GGTGA	2 cut(s)	130, 592
BbsI	GAAGAC	1 cut(s)	229
BbvI	GCAGC	3 cut(s)	289, 292, 552
BccI	CCATC	1 cut(s)	430
BceAI	ACGGC	1 cut(s)	169
BciT130I	CCWGG	1 cut(s)	410
BclI	TGATCA	1 cut(s)	367
BcoDI	GTCTC	1 cut(s)	494
BfmI	CTRYAG	2 cut(s)	297, 566
BisI	GCNGC	6 cut(s)	76, 294, 303, 306, 566, 658
BlsI	GCNGC	6 cut(s)	77, 295, 304, 307, 567, 659
Bme1390I	CCNGG	1 cut(s)	410
BmgT120I	GGNCC	2 cut(s)	4, 406
BmrFI	CCNGG	1 cut(s)	410
BpiI	GAAGAC	1 cut(s)	229
BpmI	CTGGAG	2 cut(s)	92, 266
Bpu10I	CCTNAGC	1 cut(s)	396
BsaBI	GATNNNNATC	1 cut(s)	620
BsaJI	CCNNGG	2 cut(s)	408, 643
Bse1I	ACTGG	1 cut(s)	100
Bse8I	GATNNNNATC	1 cut(s)	620
BseBI	CCWGG	1 cut(s)	410
BseDI	CCNNGG	2 cut(s)	408, 643
BseGI	GGATG	2 cut(s)	265, 370
BseJI	GATNNNNATC	1 cut(s)	620
BseMII	CTCAG	1 cut(s)	489
BseNI	ACTGG	1 cut(s)	100
BseXI	GCAGC	3 cut(s)	289, 292, 552
Bsh1236I	CGCG	2 cut(s)	26, 37
BshFI	GGCC	5 cut(s)	6, 122, 156, 293, 407
BsiSI	CCGG	1 cut(s)	119
BslFI	GGGAC	1 cut(s)	553
BsmAI	GTCTC	1 cut(s)	494
BsmFI	GGGAC	1 cut(s)	553
BsnI	GGCC	5 cut(s)	6, 122, 156, 293, 407
Bsp143I	GATC	3 cut(s)	18, 367, 615
Bsp19I	CCATGG	1 cut(s)	643
BspACI	CCGC	4 cut(s)	75, 294, 657, 660
BspANI	GGCC	5 cut(s)	6, 122, 156, 293, 407
BspCNI	CTCAG	1 cut(s)	490
BspFNI	CGCG	2 cut(s)	26, 37
BspMAI	CTGCAG	1 cut(s)	570
BspPI	GGATC	1 cut(s)	610
BsrI	ACTGG	1 cut(s)	100
BssECI	CCNNGG	2 cut(s)	408, 643
BssMI	GATC	3 cut(s)	18, 367, 615
BssT1I	CCWWGG	1 cut(s)	643
Bst2UI	CCWGG	1 cut(s)	410
Bst4CI	ACNGT	4 cut(s)	46, 197, 314, 362
Bst6I	CTCTTC	1 cut(s)	510
BstC8I	GCNNGC	3 cut(s)	252, 389, 393
BstDEI	CTNAG	2 cut(s)	396, 498
BstDSI	CCRYGG	1 cut(s)	643
BstF5I	GGATG	2 cut(s)	265, 370
BstFNI	CGCG	2 cut(s)	26, 37
BstHHI	GCGC	1 cut(s)	37
BstKTI	GATC	3 cut(s)	21, 370, 618
BstMAI	GTCTC	1 cut(s)	494
BstMBI	GATC	3 cut(s)	18, 367, 615
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 299, 302
BstNI	CCWGG	1 cut(s)	410
BstSCI	CCNGG	1 cut(s)	408
BstSFI	CTRYAG	2 cut(s)	297, 566
BstUI	CGCG	2 cut(s)	26, 37
BstV1I	GCAGC	3 cut(s)	289, 292, 552
BstV2I	GAAGAC	1 cut(s)	229
BsuRI	GGCC	5 cut(s)	6, 122, 156, 293, 407
BtgI	CCRYGG	1 cut(s)	643
BtsCI	GGATG	2 cut(s)	265, 370
BtsIMutI	CAGTG	2 cut(s)	42, 107
Cac8I	GCNNGC	3 cut(s)	252, 389, 393
CaiI	CAGNNNCTG	1 cut(s)	305
CfoI	GCGC	1 cut(s)	37
Cfr13I	GGNCC	2 cut(s)	4, 406
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	1 cut(s)	644
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	2 cut(s)	396, 498
DpnI	GATC	3 cut(s)	20, 369, 617
DpnII	GATC	3 cut(s)	18, 367, 615
EaeI	YGGCCR	2 cut(s)	120, 154
Eam1104I	CTCTTC	1 cut(s)	510
EarI	CTCTTC	1 cut(s)	510
Eco130I	CCWWGG	1 cut(s)	643
Eco57I	CTGAAG	1 cut(s)	396
EcoRI	GAATTC	2 cut(s)	68, 600
EcoRII	CCWGG	1 cut(s)	408
EcoT14I	CCWWGG	1 cut(s)	643
ErhI	CCWWGG	1 cut(s)	643
FaeI	CATG	1 cut(s)	647
FaiI	YATR	9 cut(s)	92, 193, 279, 351, 353, 434, 575, 626, 645
FaqI	GGGAC	1 cut(s)	553
FatI	CATG	1 cut(s)	643
FauNDI	CATATG	1 cut(s)	351
FbaI	TGATCA	1 cut(s)	367
FblI	GTMKAC	1 cut(s)	177
Fnu4HI	GCNGC	6 cut(s)	76, 294, 303, 306, 566, 658
FokI	GGATG	2 cut(s)	272, 357
Fsp4HI	GCNGC	6 cut(s)	76, 294, 303, 306, 566, 658
GlaI	GCGC	1 cut(s)	36
GluI	GCNGC	6 cut(s)	76, 294, 303, 306, 566, 658
GsuI	CTGGAG	2 cut(s)	92, 266
HaeIII	GGCC	5 cut(s)	6, 122, 156, 293, 407
HapII	CCGG	1 cut(s)	119
HhaI	GCGC	1 cut(s)	37
Hin1II	CATG	1 cut(s)	647
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HindIII	AAGCTT	2 cut(s)	113, 389
HinfI	GANTC	3 cut(s)	49, 212, 502
HpaII	CCGG	1 cut(s)	119
HphI	GGTGA	2 cut(s)	130, 592
Hpy166II	GTNNAC	3 cut(s)	63, 138, 178
Hpy188I	TCNGA	2 cut(s)	418, 606
Hpy188III	TCNNGA	3 cut(s)	109, 245, 374
Hpy8I	GTNNAC	3 cut(s)	63, 138, 178
Hpy99I	CGWCG	2 cut(s)	155, 179
HpyAV	CCTTC	6 cut(s)	106, 172, 250, 337, 546, 571
HpyCH4III	ACNGT	4 cut(s)	46, 197, 314, 362
HpyCH4IV	ACGT	1 cut(s)	534
HpyCH4V	TGCA	3 cut(s)	355, 568, 611
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 299, 302
HpyF3I	CTNAG	2 cut(s)	396, 498
HpySE526I	ACGT	1 cut(s)	534
Hsp92II	CATG	1 cut(s)	647
HspAI	GCGC	1 cut(s)	35
Ksp22I	TGATCA	1 cut(s)	367
Kzo9I	GATC	3 cut(s)	18, 367, 615
LmnI	GCTCC	1 cut(s)	247
Lsp1109I	GCAGC	3 cut(s)	289, 292, 552
MaeII	ACGT	1 cut(s)	534
MaeIII	GTNAC	1 cut(s)	530
MalI	GATC	3 cut(s)	20, 369, 617
MboI	GATC	3 cut(s)	18, 367, 615
MboII	GAAGA	4 cut(s)	234, 389, 497, 568
MluCI	AATT	6 cut(s)	68, 79, 166, 326, 338, 600
MluI	ACGCGT	1 cut(s)	24
MlyI	GAGTC	1 cut(s)	496
MmeI	TCCRAC	1 cut(s)	199
MnlI	CCTC	6 cut(s)	32, 116, 182, 458, 629, 641
MseI	TTAA	3 cut(s)	318, 402, 423
MspA1I	CMGCKG	2 cut(s)	75, 302
MspI	CCGG	1 cut(s)	119
MspR9I	CCNGG	1 cut(s)	410
MvaI	CCWGG	1 cut(s)	410
MvnI	CGCG	2 cut(s)	26, 37
MwoI	GCNNNNNNNGC	3 cut(s)	32, 299, 302
NcoI	CCATGG	1 cut(s)	643
NdeI	CATATG	1 cut(s)	351
NdeII	GATC	3 cut(s)	18, 367, 615
NlaIII	CATG	1 cut(s)	647
NmeAIII	GCCGAG	1 cut(s)	82
PfeI	GAWTC	2 cut(s)	49, 212
PkrI	GCNGC	6 cut(s)	77, 295, 304, 307, 567, 659
PleI	GAGTC	1 cut(s)	496
PpsI	GAGTC	1 cut(s)	496
Psp1406I	AACGTT	1 cut(s)	534
Psp6I	CCWGG	1 cut(s)	408
PspGI	CCWGG	1 cut(s)	408
PspPI	GGNCC	2 cut(s)	4, 406
PstI	CTGCAG	1 cut(s)	570
PstNI	CAGNNNCTG	1 cut(s)	305
PvuII	CAGCTG	1 cut(s)	302
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SalI	GTCGAC	1 cut(s)	176
SaqAI	TTAA	3 cut(s)	318, 402, 423
SatI	GCNGC	6 cut(s)	76, 294, 303, 306, 566, 658
Sau3AI	GATC	3 cut(s)	18, 367, 615
Sau96I	GGNCC	2 cut(s)	4, 406
SchI	GAGTC	1 cut(s)	496
ScrFI	CCNGG	1 cut(s)	410
SfcI	CTRYAG	2 cut(s)	297, 566
Sse9I	AATT	6 cut(s)	68, 79, 166, 326, 338, 600
SsiI	CCGC	4 cut(s)	75, 294, 657, 660
StyD4I	CCNGG	1 cut(s)	408
StyI	CCWWGG	1 cut(s)	643
TaaI	ACNGT	4 cut(s)	46, 197, 314, 362
TaiI	ACGT	1 cut(s)	537
TaqI	TCGA	1 cut(s)	177
TasI	AATT	6 cut(s)	68, 79, 166, 326, 338, 600
TatI	WGTACW	1 cut(s)	60
TauI	GCSGC	3 cut(s)	78, 296, 660
TfiI	GAWTC	2 cut(s)	49, 212
Tru1I	TTAA	3 cut(s)	318, 402, 423
Tru9I	TTAA	3 cut(s)	318, 402, 423
TscAI	CASTG	2 cut(s)	49, 107
TseI	GCWGC	3 cut(s)	302, 305, 565
TspDTI	ATGAA	3 cut(s)	225, 497, 590
TspGWI	ACGGA	1 cut(s)	518
TspRI	CASTG	2 cut(s)	49, 107
XapI	RAATTY	3 cut(s)	68, 326, 600
XmiI	GTMKAC	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.