Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010683

Physical Location & Seq

Genomic Coordinates Forward (+)

1334533 .. 1336704

Gene Structure 2172 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G04760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGGACAACAATCGTTGATCTACAGCTTCGTCGCTCGCGGTACGGTGATCCTCGCCGAGTATACCGAGTTCAAGGGCAATTTCACCTCCGTCGCCGCTCAGTGTCTCCAGAAACTTCCGTCCTCGAACAACAAATTTACCTACAATTGCGACGGTCACACTTTCAATTATCTCGCTGATAATGGCTTCACCTATTGTGTTGTTGTTATTGAATCTGCTGGGAGGCAGATACCAATGGCTTTCTTGGAGAGAGTCAAGGAGGATTTCAACAAGAGATACGGTGGTGGAAAAGCTTCCACTGCTAAAGCCAACAGCTTGAACAAAGAATTCGGGTCTAAATTGAAGGAGCACATGCAGTACTGTGCGGATCATCCTGAGGAGATTAGCAAACTTTCCAAAGTTAAGGCTCAGGTGACTGAAGTGAAGGGTGTTATGATGGAGAATATTGAGAAGGTCCTTGACCGTGGAGAGAAAATCGAGCTATTAGTAGACAAAACTGAGAACCTTCGCTCACAGGCACAAGATTTTAGAACACAAGGAACAAAGATGAAAAGAAAGTTGTGGTTCGAAAACATGAAGATAAAGCTCATAGTCTTTGGCATCATTGTCGCTTTGATTCTCATCATCATTTTGTCGGTTTGCCATGGCTTCAAGTGTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005886 GO:0005911 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0007049 GO:0008150 GO:0009504 GO:0009506 GO:0009507 GO:0009536 GO:0009832 GO:0009920 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0022402 GO:0022607 GO:0030054 GO:0031201 GO:0031410 GO:0031982 GO:0032506 GO:0032940 GO:0032991 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0048285 GO:0051179 GO:0051234 GO:0051301 GO:0055044 GO:0061024 GO:0061025 GO:0061640 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0090174 GO:0097708 GO:0098796 GO:0140014 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

220

Amino Acids

24.87

Weight (kDa)

9.13

Isoelectric Point (pI)

35.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Longin	PF13774	32 - 111	1.9e-22	Regulated-SNARE-like domain
Synaptobrevin	PF00957	130 - 210	5.3e-30	Synaptobrevin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010683)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04750 AT1G04760 AT1G04760 AT2G32670 AT2G33120 AT2G33120
fragaria_vesca	FvH4_3g12050
malus_domestica	MD05G1255000.v1.1 MD10G1235100.v1.1
prunus_persica	Prupe.4G108800_v2.0.a1
pyrus_communis	pycom05g23320 pycom10g19680
rosa_chinensis	RchiOBHm_Chr5g0019761
rosa_laevigata	RLG00000032466
rosa_multiflora	Rmu_ssc0000062.1_g000027
rosa_roxburghii	Rroxscaffold_1G00058370
rosa_rugosa	Rorug05G0053600
rosa_samantha	Rh5AG144200 Rh5BG142900
rosa_wichuraiana	Rw5G012750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	98
AccI	GTMKAC	2 cut(s)	62, 489
AccII	CGCG	1 cut(s)	39
AciI	CCGC	3 cut(s)	39, 96, 365
AclWI	GGATC	2 cut(s)	43, 375
AcsI	RAATTY	2 cut(s)	134, 326
AcuI	CTGAAG	1 cut(s)	438
AfaI	GTAC	3 cut(s)	43, 359, 658
AgsI	TTSAA	7 cut(s)	73, 166, 212, 268, 319, 343, 652
AluBI	AGCT	5 cut(s)	27, 293, 315, 481, 586
AluI	AGCT	5 cut(s)	27, 293, 315, 481, 586
Alw21I	GWGCWC	1 cut(s)	351
Alw26I	GTCTC	1 cut(s)	110
AlwI	GGATC	2 cut(s)	43, 375
ApoI	RAATTY	2 cut(s)	134, 326
Asp700I	GAANNNNTTC	1 cut(s)	292
AspS9I	GGNCC	1 cut(s)	454
AsuHPI	GGTGA	4 cut(s)	58, 76, 181, 424
AsuII	TTCGAA	1 cut(s)	567
AvaII	GGWCC	1 cut(s)	454
AxyI	CCTNAGG	1 cut(s)	375
BaeI	ACNNNNGTAYC	2 cut(s)	268, 301
Bbv12I	GWGCWC	1 cut(s)	351
BccI	CCATC	1 cut(s)	430
BcgI	CGANNNNNNTGC	2 cut(s)	589, 623
BcoDI	GTCTC	1 cut(s)	110
BfmI	CTRYAG	1 cut(s)	22
BisI	GCNGC	1 cut(s)	96
BlsI	GCNGC	1 cut(s)	97
BmcAI	AGTACT	1 cut(s)	359
Bme18I	GGWCC	1 cut(s)	454
BmgT120I	GGNCC	1 cut(s)	454
BmsI	GCATC	1 cut(s)	609
BpmI	CTGGAG	1 cut(s)	92
Bpu10I	CCTNAGC	1 cut(s)	408
Bpu14I	TTCGAA	1 cut(s)	567
BsaBI	GATNNNNATC	1 cut(s)	620
BsaJI	CCNNGG	2 cut(s)	463, 643
Bse21I	CCTNAGG	1 cut(s)	375
Bse8I	GATNNNNATC	1 cut(s)	620
BseDI	CCNNGG	2 cut(s)	463, 643
BseGI	GGATG	1 cut(s)	370
BseJI	GATNNNNATC	1 cut(s)	620
BseMII	CTCAG	4 cut(s)	113, 366, 422, 489
BseRI	GAGGAG	1 cut(s)	392
BseYI	CCCAGC	1 cut(s)	218
Bsh1236I	CGCG	1 cut(s)	39
BsiHKAI	GWGCWC	1 cut(s)	351
BslFI	GGGAC	1 cut(s)	18
BsmAI	GTCTC	1 cut(s)	110
BsmFI	GGGAC	1 cut(s)	18
Bsp119I	TTCGAA	1 cut(s)	567
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp143I	GATC	3 cut(s)	18, 48, 367
Bsp19I	CCATGG	1 cut(s)	643
BspACI	CCGC	3 cut(s)	39, 96, 365
BspCNI	CTCAG	4 cut(s)	112, 367, 421, 490
BspFNI	CGCG	1 cut(s)	39
BspPI	GGATC	2 cut(s)	43, 375
BspT104I	TTCGAA	1 cut(s)	567
BsrBI	CCGCTC	1 cut(s)	98
BssECI	CCNNGG	2 cut(s)	463, 643
BssMI	GATC	3 cut(s)	18, 48, 367
BssNAI	GTATAC	1 cut(s)	63
BssT1I	CCWWGG	1 cut(s)	643
Bst1107I	GTATAC	1 cut(s)	63
Bst4CI	ACNGT	5 cut(s)	46, 155, 281, 362, 464
BstBI	TTCGAA	1 cut(s)	567
BstC8I	GCNNGC	1 cut(s)	37
BstDEI	CTNAG	4 cut(s)	99, 375, 408, 498
BstDSI	CCRYGG	2 cut(s)	463, 643
BstF5I	GGATG	1 cut(s)	370
BstFNI	CGCG	1 cut(s)	39
BstKTI	GATC	3 cut(s)	21, 51, 370
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	3 cut(s)	18, 48, 367
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstNSI	RCATGY	1 cut(s)	355
BstSFI	CTRYAG	1 cut(s)	22
BstUI	CGCG	1 cut(s)	39
BstZ17I	GTATAC	1 cut(s)	63
Bsu36I	CCTNAGG	1 cut(s)	375
BtgI	CCRYGG	2 cut(s)	463, 643
BtsCI	GGATG	1 cut(s)	370
BtsI	GCAGTG	1 cut(s)	297
BtsIMutI	CAGTG	2 cut(s)	107, 297
Cac8I	GCNNGC	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	454
Csp6I	GTAC	3 cut(s)	42, 358, 657
CviAII	CATG	3 cut(s)	352, 574, 644
CviQI	GTAC	3 cut(s)	42, 358, 657
DdeI	CTNAG	4 cut(s)	99, 375, 408, 498
DpnI	GATC	3 cut(s)	20, 50, 369
DpnII	GATC	3 cut(s)	18, 48, 367
Eco130I	CCWWGG	1 cut(s)	643
Eco47I	GGWCC	1 cut(s)	454
Eco57I	CTGAAG	1 cut(s)	438
Eco81I	CCTNAGG	1 cut(s)	375
EcoO109I	RGGNCCY	1 cut(s)	454
EcoRI	GAATTC	1 cut(s)	326
EcoT14I	CCWWGG	1 cut(s)	643
ErhI	CCWWGG	1 cut(s)	643
FaeI	CATG	3 cut(s)	355, 577, 647
FaiI	YATR	6 cut(s)	63, 353, 434, 575, 590, 645
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	3 cut(s)	351, 573, 643
FblI	GTMKAC	2 cut(s)	62, 489
Fnu4HI	GCNGC	1 cut(s)	96
FokI	GGATG	1 cut(s)	357
Fsp4HI	GCNGC	1 cut(s)	96
GluI	GCNGC	1 cut(s)	96
GsaI	CCCAGC	1 cut(s)	222
GsuI	CTGGAG	1 cut(s)	92
Hin1II	CATG	3 cut(s)	355, 577, 647
HindIII	AAGCTT	1 cut(s)	291
HinfI	GANTC	3 cut(s)	212, 252, 616
HphI	GGTGA	4 cut(s)	58, 76, 181, 424
Hpy166II	GTNNAC	3 cut(s)	63, 490, 657
Hpy188III	TCNNGA	2 cut(s)	109, 374
Hpy8I	GTNNAC	3 cut(s)	63, 490, 657
Hpy99I	CGWCG	3 cut(s)	35, 95, 155
HpyAV	CCTTC	4 cut(s)	337, 418, 445, 515
HpyCH4III	ACNGT	5 cut(s)	46, 155, 281, 362, 464
HpyCH4V	TGCA	1 cut(s)	355
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
HpyF3I	CTNAG	4 cut(s)	99, 375, 408, 498
Hsp92II	CATG	3 cut(s)	355, 577, 647
Kzo9I	GATC	3 cut(s)	18, 48, 367
LmnI	GCTCC	1 cut(s)	346
LpnPI	CCDG	5 cut(s)	122, 204, 387, 395, 500
LweI	GCATC	1 cut(s)	609
MaeIII	GTNAC	2 cut(s)	155, 412
MalI	GATC	3 cut(s)	20, 50, 369
MbiI	CCGCTC	1 cut(s)	98
MboI	GATC	3 cut(s)	18, 48, 367
MboII	GAAGA	1 cut(s)	589
MfeI	CAATTG	1 cut(s)	145
MhlI	GDGCHC	1 cut(s)	351
MluCI	AATT	6 cut(s)	79, 134, 145, 166, 326, 338
MlyI	GAGTC	1 cut(s)	261
MnlI	CCTC	6 cut(s)	62, 97, 133, 216, 253, 370
MroXI	GAANNNNTTC	1 cut(s)	292
MseI	TTAA	2 cut(s)	402, 661
MunI	CAATTG	1 cut(s)	145
MvnI	CGCG	1 cut(s)	39
MwoI	GCNNNNNNNGC	1 cut(s)	299
NcoI	CCATGG	1 cut(s)	643
NdeII	GATC	3 cut(s)	18, 48, 367
NlaIII	CATG	3 cut(s)	355, 577, 647
NmeAIII	GCCGAG	1 cut(s)	82
NmuCI	GTSAC	2 cut(s)	155, 412
NspI	RCATGY	1 cut(s)	355
NspV	TTCGAA	1 cut(s)	567
PdmI	GAANNNNTTC	1 cut(s)	292
PfeI	GAWTC	2 cut(s)	212, 616
PkrI	GCNGC	1 cut(s)	97
PleI	GAGTC	1 cut(s)	260
PpsI	GAGTC	1 cut(s)	260
PpuMI	RGGWCCY	1 cut(s)	454
Psp5II	RGGWCCY	1 cut(s)	454
PspFI	CCCAGC	1 cut(s)	218
PspPI	GGNCC	1 cut(s)	454
PspPPI	RGGWCCY	1 cut(s)	454
PsrI	GAACNNNNNNTAC	2 cut(s)	53, 85
RsaI	GTAC	3 cut(s)	43, 359, 658
RsaNI	GTAC	3 cut(s)	42, 358, 657
SaqAI	TTAA	2 cut(s)	402, 661
SatI	GCNGC	1 cut(s)	96
Sau3AI	GATC	3 cut(s)	18, 48, 367
Sau96I	GGNCC	1 cut(s)	454
ScaI	AGTACT	1 cut(s)	359
SchI	GAGTC	1 cut(s)	261
SduI	GDGCHC	1 cut(s)	351
SfaNI	GCATC	1 cut(s)	609
SfcI	CTRYAG	1 cut(s)	22
SfuI	TTCGAA	1 cut(s)	567
SinI	GGWCC	1 cut(s)	454
Sse9I	AATT	6 cut(s)	79, 134, 145, 166, 326, 338
SsiI	CCGC	3 cut(s)	39, 96, 365
SspI	AATATT	1 cut(s)	445
StyI	CCWWGG	1 cut(s)	643
TaaI	ACNGT	5 cut(s)	46, 155, 281, 362, 464
TaqI	TCGA	3 cut(s)	125, 477, 567
TasI	AATT	6 cut(s)	79, 134, 145, 166, 326, 338
TatI	WGTACW	2 cut(s)	357, 656
TauI	GCSGC	1 cut(s)	98
TfiI	GAWTC	2 cut(s)	212, 616
Tru1I	TTAA	2 cut(s)	402, 661
Tru9I	TTAA	2 cut(s)	402, 661
TscAI	CASTG	2 cut(s)	107, 304
TseFI	GTSAC	2 cut(s)	155, 412
Tsp45I	GTSAC	2 cut(s)	155, 412
TspDTI	ATGAA	2 cut(s)	563, 590
TspGWI	ACGGA	2 cut(s)	79, 108
TspRI	CASTG	2 cut(s)	107, 304
VpaK11BI	GGWCC	1 cut(s)	454
XapI	RAATTY	2 cut(s)	134, 326
XceI	RCATGY	1 cut(s)	355
XmiI	GTMKAC	2 cut(s)	62, 489
XmnI	GAANNNNTTC	1 cut(s)	292
ZrmI	AGTACT	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.