Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0010683

Physical Location & Seq

Genomic Coordinates Forward (+)

4655997 .. 4657727

Gene Structure 1731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0053600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGATCAAATCCAGCACAACTTCATAACAGTGGAAGGCCTCAAGCTCCACGTAGCCGACATCGGAACAGGTCCCAATGTGGTCTTGTTCCTGCACGGATTCCCAGAAATATGGTACACGTGGCGCCACCAGATGATCGCTGCCGCCAACGCCGGTTTCCGGGCCATCGCGCCTGACTACCGTGGACACGGTCTTTCCGACCAGCCGCCCGAACCCGACAAGGCCTCCTACCGTGACCTCGTCAACGACATCCTTGCTATTCTTGAAGCTCTTGCTATTACCAAGGTTTTCGTTGTCGCAAAAGATTTTGGAGCTTGGCCGGCGTACATACTTGCCCTTCTTTACCCCGATAGGATCTTGGGAGTTGTAACATTGGGAGTGCCATACATACCAGCTTCAAGTCGTCCCAGTTTCACCAAATCCCTCCCTGAAGGTTTCTACATTTCAAGATTTCATGAACCAGGCAGGGCTGAAGCTGATTTTGGGCGCTTTGATGCGACAACAGTTTTTCGGAATATTTACATCCTTTTCTCCAGAAGTGAAATCCCAATAGCTGCAGAAAACCAGGAGATCATGGACTTGGTTGACCCATCTACGCCTCTTCCCCCTTGGTTCTCTGAGGAAGATCTTAAAGCATATGGAGCTGCATATGAGAGAACAGGTTTCCAGACTGCATTGCAGATCACATATAGGTCCAAGTCAGACGACATGGGCATAACAGAACTAATTGTTAAAGTTCCGGTGCTTGTTATAATGGGACGGAAGGATTACTTTAACAAGTTTCCGGGGATAGAGGACTCTATAACCAGTGGAAAGGTGAACGAGTTTACATCTGATTTGGAGCTTGTATATATGCCTGAAGGAACACATTTTGCTCAAGAACAATCTCCTGACCAGTTCAATCAGCTAATGCTCACCTTCCTTAAAAAGCACATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0097708 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

312

Amino Acids

35.13

Weight (kDa)

5.12

Isoelectric Point (pI)

41.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	26 - 258	1.8e-24	alpha/beta hydrolase fold
Hydrolase_4	PF12146	27 - 126	2.1e-08	Serine aminopeptidase, S33
Abhydrolase_6	PF12697	28 - 302	1.1e-15	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010683)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04750 AT1G04760 AT1G04760 AT2G32670 AT2G33120 AT2G33120
fragaria_vesca	FvH4_3g12050
malus_domestica	MD05G1255000.v1.1 MD10G1235100.v1.1
prunus_persica	Prupe.4G108800_v2.0.a1
pyrus_communis	pycom05g23320 pycom10g19680
rosa_chinensis	RchiOBHm_Chr5g0019761
rosa_laevigata	RLG00000032466
rosa_multiflora	Rmu_ssc0000062.1_g000027
rosa_roxburghii	Rroxscaffold_1G00058370
rosa_rugosa	Rorug05G0053600
rosa_samantha	Rh5AG144200 Rh5BG142900
rosa_wichuraiana	Rw5G012750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	752
AccB1I	GGYRCC	1 cut(s)	123
AccII	CGCG	1 cut(s)	170
AciI	CCGC	2 cut(s)	144, 206
AclWI	GGATC	2 cut(s)	12, 362
AcoI	YGGCCR	1 cut(s)	317
AcuI	CTGAAG	3 cut(s)	450, 492, 879
AcvI	CACGTG	1 cut(s)	120
AcyI	GRCGYC	1 cut(s)	124
AfaI	GTAC	2 cut(s)	116, 326
AfiI	CCNNNNNNNGG	1 cut(s)	159
AflIII	ACRYGT	1 cut(s)	117
AgsI	TTSAA	4 cut(s)	266, 399, 447, 901
AjnI	CCWGG	2 cut(s)	460, 564
AjuI	GAANNNNNNNTTGG	4 cut(s)	140, 172, 465, 497
AluBI	AGCT	9 cut(s)	46, 269, 314, 395, 476, 554, 644, 844, 907
AluI	AGCT	9 cut(s)	46, 269, 314, 395, 476, 554, 644, 844, 907
AlwI	GGATC	2 cut(s)	12, 362
AoxI	GGCC	4 cut(s)	37, 162, 222, 317
ApeKI	GCWGC	3 cut(s)	140, 554, 644
AspLEI	GCGC	3 cut(s)	126, 172, 489
AspS9I	GGNCC	3 cut(s)	71, 162, 693
AsuC2I	CCSGG	2 cut(s)	161, 786
AsuHPI	GGTGA	3 cut(s)	406, 829, 907
AvaII	GGWCC	2 cut(s)	71, 693
BanI	GGYRCC	1 cut(s)	123
BbrPI	CACGTG	1 cut(s)	120
BbvI	GCAGC	3 cut(s)	127, 541, 631
BccI	CCATC	2 cut(s)	173, 598
BcgI	CGANNNNNNTGC	2 cut(s)	236, 270
BciT130I	CCWGG	2 cut(s)	462, 566
BcnI	CCSGG	2 cut(s)	161, 786
BfmI	CTRYAG	1 cut(s)	555
BfoI	RGCGCY	2 cut(s)	127, 490
BglII	AGATCT	1 cut(s)	625
BisI	GCNGC	5 cut(s)	141, 144, 206, 555, 645
BlsI	GCNGC	5 cut(s)	142, 145, 207, 556, 646
Bme1390I	CCNGG	4 cut(s)	161, 462, 566, 786
Bme18I	GGWCC	2 cut(s)	71, 693
BmgT120I	GGNCC	3 cut(s)	71, 162, 693
BmiI	GGNNCC	2 cut(s)	73, 125
BmrFI	CCNGG	4 cut(s)	161, 462, 566, 786
BmrI	ACTGGG	1 cut(s)	402
BmsI	GCATC	1 cut(s)	484
BmuI	ACTGGG	1 cut(s)	402
BpmI	CTGGAG	1 cut(s)	517
BpuEI	CTTGAG	2 cut(s)	26, 861
BpuMI	CCSGG	2 cut(s)	161, 786
BsaAI	YACGTR	2 cut(s)	52, 120
BsaHI	GRCGYC	1 cut(s)	124
BsaJI	CCNNGG	4 cut(s)	181, 282, 608, 785
BsaWI	WCCGGW	1 cut(s)	739
BsaXI	ACNNNNNCTCC	2 cut(s)	209, 239
Bsc4I	CCNNNNNNNGG	1 cut(s)	159
Bse118I	RCCGGY	2 cut(s)	152, 319
Bse1I	ACTGG	3 cut(s)	408, 807, 895
Bse3DI	GCAATG	1 cut(s)	674
BseBI	CCWGG	2 cut(s)	462, 566
BseDI	CCNNGG	4 cut(s)	181, 282, 608, 785
BseGI	GGATG	2 cut(s)	249, 522
BseLI	CCNNNNNNNGG	1 cut(s)	159
BseMI	GCAATG	1 cut(s)	674
BseMII	CTCAG	1 cut(s)	609
BseNI	ACTGG	3 cut(s)	408, 807, 895
BseXI	GCAGC	3 cut(s)	127, 541, 631
BsgI	GTGCAG	1 cut(s)	77
Bsh1236I	CGCG	1 cut(s)	170
BshFI	GGCC	4 cut(s)	39, 164, 224, 319
BshNI	GGYRCC	1 cut(s)	123
BsiSI	CCGG	5 cut(s)	153, 160, 320, 740, 785
BslFI	GGGAC	3 cut(s)	57, 390, 771
BslI	CCNNNNNNNGG	1 cut(s)	159
BsmFI	GGGAC	3 cut(s)	57, 390, 771
BsnI	GGCC	4 cut(s)	39, 164, 224, 319
Bsp143I	GATC	6 cut(s)	4, 135, 354, 570, 625, 681
BspACI	CCGC	2 cut(s)	144, 206
BspANI	GGCC	4 cut(s)	39, 164, 224, 319
BspCNI	CTCAG	1 cut(s)	610
BspFNI	CGCG	1 cut(s)	170
BspHI	TCATGA	1 cut(s)	454
BspLI	GGNNCC	2 cut(s)	73, 125
BspMAI	CTGCAG	1 cut(s)	559
BspPI	GGATC	2 cut(s)	12, 362
BspT107I	GGYRCC	1 cut(s)	123
BsrDI	GCAATG	1 cut(s)	674
BsrFI	RCCGGY	2 cut(s)	152, 319
BsrI	ACTGG	3 cut(s)	408, 807, 895
BssAI	RCCGGY	2 cut(s)	152, 319
BssECI	CCNNGG	4 cut(s)	181, 282, 608, 785
BssMI	GATC	6 cut(s)	4, 135, 354, 570, 625, 681
BssNI	GRCGYC	1 cut(s)	124
BssT1I	CCWWGG	2 cut(s)	282, 608
Bst2UI	CCWGG	2 cut(s)	462, 566
Bst4CI	ACNGT	5 cut(s)	31, 182, 191, 233, 505
Bst6I	CTCTTC	1 cut(s)	606
BstACI	GRCGYC	1 cut(s)	124
BstBAI	YACGTR	2 cut(s)	52, 120
BstC8I	GCNNGC	1 cut(s)	321
BstDEI	CTNAG	1 cut(s)	618
BstDSI	CCRYGG	1 cut(s)	181
BstF5I	GGATG	2 cut(s)	249, 522
BstFNI	CGCG	1 cut(s)	170
BstH2I	RGCGCY	2 cut(s)	127, 490
BstHHI	GCGC	3 cut(s)	126, 172, 489
BstKTI	GATC	6 cut(s)	7, 138, 357, 573, 628, 684
BstMBI	GATC	6 cut(s)	4, 135, 354, 570, 625, 681
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 320, 641
BstNI	CCWGG	2 cut(s)	462, 566
BstSCI	CCNGG	4 cut(s)	159, 460, 564, 784
BstSFI	CTRYAG	1 cut(s)	555
BstUI	CGCG	1 cut(s)	170
BstV1I	GCAGC	3 cut(s)	127, 541, 631
BstX2I	RGATCY	2 cut(s)	354, 625
BstXI	CCANNNNNNTGG	1 cut(s)	111
BstYI	RGATCY	2 cut(s)	354, 625
BsuRI	GGCC	4 cut(s)	39, 164, 224, 319
BtgI	CCRYGG	1 cut(s)	181
BtgZI	GCGATG	1 cut(s)	151
BtsCI	GGATG	2 cut(s)	249, 522
BtsIMutI	CAGTG	2 cut(s)	36, 814
Cac8I	GCNNGC	1 cut(s)	321
CciI	TCATGA	1 cut(s)	454
CfoI	GCGC	3 cut(s)	126, 172, 489
Cfr10I	RCCGGY	2 cut(s)	152, 319
Cfr13I	GGNCC	3 cut(s)	71, 162, 693
Csp6I	GTAC	2 cut(s)	115, 325
CviAII	CATG	3 cut(s)	455, 574, 709
CviQI	GTAC	2 cut(s)	115, 325
DdeI	CTNAG	1 cut(s)	618
DinI	GGCGCC	1 cut(s)	125
DpnI	GATC	6 cut(s)	6, 137, 356, 572, 627, 683
DpnII	GATC	6 cut(s)	4, 135, 354, 570, 625, 681
EaeI	YGGCCR	1 cut(s)	317
Eam1104I	CTCTTC	1 cut(s)	606
EarI	CTCTTC	1 cut(s)	606
Eco130I	CCWWGG	2 cut(s)	282, 608
Eco147I	AGGCCT	2 cut(s)	39, 224
Eco47I	GGWCC	2 cut(s)	71, 693
Eco57I	CTGAAG	3 cut(s)	450, 492, 879
Eco72I	CACGTG	1 cut(s)	120
EcoO109I	RGGNCCY	1 cut(s)	71
EcoRII	CCWGG	2 cut(s)	460, 564
EcoT14I	CCWWGG	2 cut(s)	282, 608
EgeI	GGCGCC	1 cut(s)	125
EheI	GGCGCC	1 cut(s)	125
ErhI	CCWWGG	2 cut(s)	282, 608
FaeI	CATG	3 cut(s)	458, 577, 712
FalI	AAGNNNNNCTT	2 cut(s)	755, 787
FaqI	GGGAC	3 cut(s)	57, 390, 771
FatI	CATG	3 cut(s)	454, 573, 708
FauNDI	CATATG	2 cut(s)	637, 649
Fnu4HI	GCNGC	5 cut(s)	141, 144, 206, 555, 645
FokI	GGATG	2 cut(s)	236, 509
Fsp4HI	GCNGC	5 cut(s)	141, 144, 206, 555, 645
GlaI	GCGC	3 cut(s)	125, 171, 488
GluI	GCNGC	5 cut(s)	141, 144, 206, 555, 645
GsuI	CTGGAG	1 cut(s)	517
HaeII	RGCGCY	2 cut(s)	127, 490
HaeIII	GGCC	4 cut(s)	39, 164, 224, 319
HapII	CCGG	5 cut(s)	153, 160, 320, 740, 785
HhaI	GCGC	3 cut(s)	126, 172, 489
Hin1I	GRCGYC	1 cut(s)	124
Hin1II	CATG	3 cut(s)	458, 577, 712
Hin6I	GCGC	3 cut(s)	124, 170, 487
HinP1I	GCGC	3 cut(s)	124, 170, 487
HincII	GTYRAC	2 cut(s)	244, 586
HindII	GTYRAC	2 cut(s)	244, 586
HinfI	GANTC	2 cut(s)	99, 797
HpaII	CCGG	5 cut(s)	153, 160, 320, 740, 785
HphI	GGTGA	3 cut(s)	406, 829, 907
Hpy166II	GTNNAC	6 cut(s)	117, 185, 244, 586, 820, 828
Hpy188I	TCNGA	7 cut(s)	65, 199, 513, 619, 703, 835, 938
Hpy188III	TCNNGA	7 cut(s)	263, 447, 455, 534, 667, 878, 890
Hpy8I	GTNNAC	6 cut(s)	117, 185, 244, 586, 820, 828
HpyAV	CCTTC	6 cut(s)	29, 347, 425, 757, 854, 928
HpyCH4III	ACNGT	5 cut(s)	31, 182, 191, 233, 505
HpyCH4IV	ACGT	2 cut(s)	51, 119
HpyCH4V	TGCA	5 cut(s)	94, 557, 647, 674, 679
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 320, 641
HpyF3I	CTNAG	1 cut(s)	618
HpySE526I	ACGT	2 cut(s)	51, 119
Hsp92I	GRCGYC	1 cut(s)	124
Hsp92II	CATG	3 cut(s)	458, 577, 712
HspAI	GCGC	3 cut(s)	124, 170, 487
KasI	GGCGCC	1 cut(s)	123
KroI	GCCGGC	1 cut(s)	319
KroNI	GCCGGC	1 cut(s)	321
Kzo9I	GATC	6 cut(s)	4, 135, 354, 570, 625, 681
LmnI	GCTCC	4 cut(s)	51, 311, 641, 841
Lsp1109I	GCAGC	3 cut(s)	127, 541, 631
LweI	GCATC	1 cut(s)	484
MaeII	ACGT	2 cut(s)	51, 119
MaeIII	GTNAC	2 cut(s)	233, 367
MalI	GATC	6 cut(s)	6, 137, 356, 572, 627, 683
MboI	GATC	6 cut(s)	4, 135, 354, 570, 625, 681
MboII	GAAGA	2 cut(s)	593, 635
MflI	RGATCY	2 cut(s)	354, 625
MluCI	AATT	1 cut(s)	726
Mly113I	GGCGCC	1 cut(s)	124
MlyI	GAGTC	1 cut(s)	791
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	7 cut(s)	50, 235, 248, 434, 609, 613, 787
MroNI	GCCGGC	1 cut(s)	319
MseI	TTAA	4 cut(s)	630, 732, 774, 924
MslI	CAYNNNNRTG	1 cut(s)	29
MspI	CCGG	5 cut(s)	153, 160, 320, 740, 785
MspR9I	CCNGG	4 cut(s)	161, 462, 566, 786
MvaI	CCWGG	2 cut(s)	462, 566
MvnI	CGCG	1 cut(s)	170
MwoI	GCNNNNNNNGC	3 cut(s)	149, 320, 641
NaeI	GCCGGC	1 cut(s)	321
NarI	GGCGCC	1 cut(s)	124
NciI	CCSGG	2 cut(s)	161, 786
NdeI	CATATG	2 cut(s)	637, 649
NdeII	GATC	6 cut(s)	4, 135, 354, 570, 625, 681
NgoMIV	GCCGGC	1 cut(s)	319
NlaIII	CATG	3 cut(s)	458, 577, 712
NlaIV	GGNNCC	2 cut(s)	73, 125
NmuCI	GTSAC	1 cut(s)	233
PagI	TCATGA	1 cut(s)	454
PceI	AGGCCT	2 cut(s)	39, 224
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PdiI	GCCGGC	1 cut(s)	321
PfeI	GAWTC	1 cut(s)	99
PflFI	GACNNNGTC	2 cut(s)	189, 239
PkrI	GCNGC	5 cut(s)	142, 145, 207, 556, 646
PleI	GAGTC	1 cut(s)	791
PluTI	GGCGCC	1 cut(s)	127
PmaCI	CACGTG	1 cut(s)	120
PmlI	CACGTG	1 cut(s)	120
PpsI	GAGTC	1 cut(s)	791
Ppu21I	YACGTR	2 cut(s)	52, 120
PpuMI	RGGWCCY	1 cut(s)	71
PsiI	TTATAA	1 cut(s)	752
Psp5II	RGGWCCY	1 cut(s)	71
Psp6I	CCWGG	2 cut(s)	460, 564
PspCI	CACGTG	1 cut(s)	120
PspGI	CCWGG	2 cut(s)	460, 564
PspN4I	GGNNCC	2 cut(s)	73, 125
PspPI	GGNCC	3 cut(s)	71, 162, 693
PspPPI	RGGWCCY	1 cut(s)	71
PstI	CTGCAG	1 cut(s)	559
PsuI	RGATCY	2 cut(s)	354, 625
PsyI	GACNNNGTC	2 cut(s)	189, 239
RsaI	GTAC	2 cut(s)	116, 326
RsaNI	GTAC	2 cut(s)	115, 325
RseI	CAYNNNNRTG	1 cut(s)	29
SaqAI	TTAA	4 cut(s)	630, 732, 774, 924
SatI	GCNGC	5 cut(s)	141, 144, 206, 555, 645
Sau3AI	GATC	6 cut(s)	4, 135, 354, 570, 625, 681
Sau96I	GGNCC	3 cut(s)	71, 162, 693
SchI	GAGTC	1 cut(s)	791
ScrFI	CCNGG	4 cut(s)	161, 462, 566, 786
SfaNI	GCATC	1 cut(s)	484
SfcI	CTRYAG	1 cut(s)	555
SfoI	GGCGCC	1 cut(s)	125
SinI	GGWCC	2 cut(s)	71, 693
SmiMI	CAYNNNNRTG	1 cut(s)	29
SmlI	CTYRAG	2 cut(s)	41, 876
SmoI	CTYRAG	2 cut(s)	41, 876
Sse9I	AATT	1 cut(s)	726
SseBI	AGGCCT	2 cut(s)	39, 224
SsiI	CCGC	2 cut(s)	144, 206
SspDI	GGCGCC	1 cut(s)	123
SspI	AATATT	1 cut(s)	517
StuI	AGGCCT	2 cut(s)	39, 224
StyD4I	CCNGG	4 cut(s)	159, 460, 564, 784
StyI	CCWWGG	2 cut(s)	282, 608
TaaI	ACNGT	5 cut(s)	31, 182, 191, 233, 505
TaiI	ACGT	2 cut(s)	54, 122
TasI	AATT	1 cut(s)	726
TauI	GCSGC	2 cut(s)	146, 208
TfiI	GAWTC	1 cut(s)	99
Tru1I	TTAA	4 cut(s)	630, 732, 774, 924
Tru9I	TTAA	4 cut(s)	630, 732, 774, 924
TscAI	CASTG	2 cut(s)	36, 814
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	3 cut(s)	140, 554, 644
Tsp45I	GTSAC	1 cut(s)	233
TspDTI	ATGAA	3 cut(s)	13, 443, 471
TspGWI	ACGGA	2 cut(s)	111, 775
TspRI	CASTG	2 cut(s)	36, 814
Tth111I	GACNNNGTC	2 cut(s)	189, 239
VpaK11BI	GGWCC	2 cut(s)	71, 693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.