AT1G05370

Cellular retinaldehyde-binding triple function, C-terminal (InterPro IPR001251), Phosphatidylinositol transfer protein-like, N-terminal (InterPro IPR011074)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012073
Physical Location & Seq
Reverse (-)
1569147 .. 1572469
3323 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G05370.1

Sequence Viewer

Length: 1254 bp
ATGGGAAAGAAAGAGCAGAAGGATCATCATTCAGTAGTAGAGAGCGACGACAAAGTCGAAGCTGTTCTTCATCTCCTTCGTAAACATTCTCCTCTAACTCTTAAACAGGAGAAGTTCTGTAACAGAGCTTGTGTCGGTAGATTCTTGAGAATAAAAGGAGACAATGTGAAGAAAGCAGCTAAACAGTTAAGGTCTTGCCTTTCATGGAGATCTTCTCTTGGCATTGAGAGTTTGATCGCCGATGAGTTCACGGCGGAGCTTGCTGAAGGTCTTGCCTACGTCGCTGGTCTTGACGACGAGTGTAGACCCGTTTTGGTTTTCCGCATTAAACAAGATTATCAGAAGCTACATACGCAGAAACAGTTGACACGTTTGGTGGTATTTACATTAGAGGTTGCTATCTCAACCATGTCCAGAAACGTCGAACAATTTGTCATCCTTTTCGATGCTAGCTTCTTCAAATCAGCATCAGCTTTCATGAACATACTTGTGACTACACTCAAAATAGTCGCAGAGTATTATCCTTGTCGTCTTTTCAAAACCTTCGTCATCGATCCTCCTTCTCTTTTCTCTTACCTTTGGAAGGGTATTCGCACATTCGTGGATCTATCAACGGCTACGATGATTGTATCAATGCAAGATTTTCAAGACTCGTTTGACTACGACGATTTCTCGTCATCATACCCATCACGAGTCTCCTCCCTACGATTCGACACGTCATCACTAAAATCAACGGACAAGATCGGCTCATGCGCATCCTCTAGGTTCGCTTTCACCGTATCTCGCGACGGACTCGACACAGTCAAACCATGGTGTCTCACGTTGACTGACACGTCATCAACCAAACTAGGACACAACACAGGCGCGTACATCTCACCGCTTAACGCGCGTTCTTTCTCTTTCGCGTCACCGGCGGCTAGAAGCGAGCCATTCGGTGGTCCAAGGAGGAGCTTCTTCGCTTCCACTCCGATGCCAGCTAGGACCACCGACCGTCACTCTATCGGAACCCTACGGGACCCGCGGATACCTCGCCCGTCTTTCTTCCAATCTCCGGCGATTTTCTTCCGGCGAGAGTCACACGTCAGCAAAAGTGAGAAACCACGAGATTCGTTCGTTCAGTTTCTCAAGTTTTATCGTAGACCGTACGATGAGATGACTTATAGGTCAAAGATGAGGCCACCGCTCGGTGGTCTTGTATCCATTGTTTCAACTCAGATTAGACGCCGTCACGTGTCTTTATCCCAACGGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO

Protein Analysis

417

Amino Acids

47.5

Weight (kDa)

9.77

Isoelectric Point (pI)

56.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO PF00650 89 - 214 9.3e-22 CRAL/TRIO domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012073)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05370 AT3G22410
fragaria_vesca FvH4_4g15420 FvH4_4g15420
malus_domestica MD13G1192100.v1.1 MD16G1192700.v1.1
prunus_persica Prupe.1G012800_v2.0.a1
pyrus_communis pycom13g16480 pycom16g16260
rosa_chinensis RchiOBHm_Chr4g0416361
rosa_laevigata RLG00000007989
rosa_multiflora Rmu_sc0001488.1_g000005
rosa_roxburghii Rroxscaffold_5G00360210
rosa_rugosa Rorug04G0141300
rosa_samantha Rh4AG203700 Rh4BG200900 Rh4CG214900 Rh4DG200600
rosa_wichuraiana Rw4G017200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 53, 832, 1162
Acc16I TGCGCA 1 cut(s) 754
AccB7I CCANNNNNTGG 1 cut(s) 935
AccBSI CCGCTC 1 cut(s) 1183
AccI GTMKAC 2 cut(s) 304, 1138
AccII CGCG 6 cut(s) 786, 866, 887, 889, 905, 1021
AciI CCGC 7 cut(s) 254, 322, 878, 914, 1019, 1021, 1181
AclWI GGATC 3 cut(s) 30, 548, 612
AcuI CTGAAG 1 cut(s) 285
AcvI CACGTG 1 cut(s) 1231
AcyI GRCGYC 1 cut(s) 1222
AfaI GTAC 2 cut(s) 869, 1145
AfiI CCNNNNNNNGG 5 cut(s) 583, 935, 1051, 1184, 1187
AflIII ACRYGT 5 cut(s) 368, 714, 831, 1078, 1230
AgsI TTSAA 4 cut(s) 460, 538, 647, 1209
AjiI CACGTC 3 cut(s) 717, 834, 1081
AleI CACNNNNGTG 1 cut(s) 599
AluBI AGCT 9 cut(s) 62, 128, 179, 259, 346, 453, 473, 951, 977
AluI AGCT 9 cut(s) 62, 128, 179, 259, 346, 453, 473, 951, 977
Alw26I GTCTC 3 cut(s) 153, 700, 821
AlwI GGATC 3 cut(s) 30, 548, 612
AoxI GGCC 1 cut(s) 1175
ApeKI GCWGC 1 cut(s) 176
ArsI GACNNNNNNTTYG 4 cut(s) 417, 449, 531, 563
Asp700I GAANNNNTTC 1 cut(s) 63
AspLEI GCGC 3 cut(s) 755, 866, 889
AspS9I GGNCC 3 cut(s) 938, 981, 1015
AsuHPI GGTGA 3 cut(s) 766, 867, 900
AsuNHI GCTAGC 1 cut(s) 449
AvaII GGWCC 3 cut(s) 938, 981, 1015
BauI CACGAG 2 cut(s) 690, 1101
BbrPI CACGTG 1 cut(s) 1231
BbvI GCAGC 1 cut(s) 188
BccI CCATC 1 cut(s) 694
BceAI ACGGC 3 cut(s) 267, 630, 1209
BciVI GTATCC 2 cut(s) 1017, 1207
BcoDI GTCTC 3 cut(s) 153, 700, 821
BfaI CTAG 5 cut(s) 450, 762, 848, 918, 978
BfuI GTATCC 2 cut(s) 1017, 1207
BglII AGATCT 1 cut(s) 209
BisI GCNGC 2 cut(s) 177, 915
BlsI GCNGC 2 cut(s) 178, 916
Bme18I GGWCC 3 cut(s) 938, 981, 1015
BmgBI CACGTC 3 cut(s) 717, 834, 1081
BmgT120I GGNCC 3 cut(s) 938, 981, 1015
BmiI GGNNCC 3 cut(s) 1006, 1016, 1017
BmsI GCATC 4 cut(s) 436, 476, 764, 960
BmtI GCTAGC 1 cut(s) 453
BplI GAGNNNNNCTC 2 cut(s) 199, 231
BpuEI CTTGAG 2 cut(s) 166, 1109
Bsa29I ATCGAT 1 cut(s) 552
BsaAI YACGTR 1 cut(s) 1231
BsaHI GRCGYC 1 cut(s) 1222
BsaJI CCNNGG 3 cut(s) 809, 941, 1019
BsaXI ACNNNNNCTCC 2 cut(s) 150, 180
Bsc4I CCNNNNNNNGG 5 cut(s) 583, 935, 1051, 1184, 1187
Bse118I RCCGGY 1 cut(s) 910
BseCI ATCGAT 1 cut(s) 552
BseDI CCNNGG 3 cut(s) 809, 941, 1019
BseGI GGATG 2 cut(s) 435, 755
BseLI CCNNNNNNNGG 5 cut(s) 583, 935, 1051, 1184, 1187
BseMII CTCAG 1 cut(s) 1226
BseRI GAGGAG 3 cut(s) 81, 688, 961
BseXI GCAGC 1 cut(s) 188
Bsh1236I CGCG 6 cut(s) 786, 866, 887, 889, 905, 1021
Bsh1285I CGRYCG 1 cut(s) 991
BshFI GGCC 1 cut(s) 1177
BshVI ATCGAT 1 cut(s) 552
BsiEI CGRYCG 1 cut(s) 991
BsiSI CCGG 3 cut(s) 911, 1052, 1066
BsiWI CGTACG 1 cut(s) 1143
BslFI GGGAC 1 cut(s) 1028
BslI CCNNNNNNNGG 5 cut(s) 583, 935, 1051, 1184, 1187
BsmAI GTCTC 3 cut(s) 153, 700, 821
BsmFI GGGAC 1 cut(s) 1028
BsnI GGCC 1 cut(s) 1177
Bsp143I GATC 6 cut(s) 22, 209, 234, 553, 604, 741
Bsp19I CCATGG 1 cut(s) 809
Bsp68I TCGCGA 1 cut(s) 786
BspACI CCGC 7 cut(s) 254, 322, 878, 914, 1019, 1021, 1181
BspANI GGCC 1 cut(s) 1177
BspCNI CTCAG 1 cut(s) 1225
BspDI ATCGAT 1 cut(s) 552
BspFNI CGCG 6 cut(s) 786, 866, 887, 889, 905, 1021
BspHI TCATGA 1 cut(s) 477
BspLI GGNNCC 3 cut(s) 1006, 1016, 1017
BspOI GCTAGC 1 cut(s) 453
BspPI GGATC 3 cut(s) 30, 548, 612
BsrBI CCGCTC 1 cut(s) 1183
BsrFI RCCGGY 1 cut(s) 910
BssAI RCCGGY 1 cut(s) 910
BssECI CCNNGG 3 cut(s) 809, 941, 1019
BssMI GATC 6 cut(s) 22, 209, 234, 553, 604, 741
BssNI GRCGYC 1 cut(s) 1222
BssSI CACGAG 2 cut(s) 690, 1101
BssT1I CCWWGG 2 cut(s) 809, 941
Bst2BI CACGAG 2 cut(s) 690, 1101
Bst4CI ACNGT 7 cut(s) 186, 363, 778, 802, 992, 1143, 1248
BstACI GRCGYC 1 cut(s) 1222
BstBAI YACGTR 1 cut(s) 1231
BstC8I GCNNGC 4 cut(s) 261, 451, 926, 975
BstDEI CTNAG 1 cut(s) 1212
BstDSI CCRYGG 2 cut(s) 809, 1019
BstENI CCTNNNNNAGG 1 cut(s) 581
BstF5I GGATG 2 cut(s) 435, 755
BstFNI CGCG 6 cut(s) 786, 866, 887, 889, 905, 1021
BstHHI GCGC 3 cut(s) 755, 866, 889
BstKTI GATC 6 cut(s) 25, 212, 237, 556, 607, 744
BstMAI GTCTC 3 cut(s) 153, 700, 821
BstMBI GATC 6 cut(s) 22, 209, 234, 553, 604, 741
BstMCI CGRYCG 1 cut(s) 991
BstMWI GCNNNNNNNGC 5 cut(s) 260, 281, 352, 886, 911
BstUI CGCG 6 cut(s) 786, 866, 887, 889, 905, 1021
BstV1I GCAGC 1 cut(s) 188
BstX2I RGATCY 2 cut(s) 209, 604
BstYI RGATCY 2 cut(s) 209, 604
Bsu15I ATCGAT 1 cut(s) 552
BsuI GTATCC 2 cut(s) 1017, 1207
BsuRI GGCC 1 cut(s) 1177
BsuTUI ATCGAT 1 cut(s) 552
BtgI CCRYGG 2 cut(s) 809, 1019
BtrI CACGTC 3 cut(s) 717, 834, 1081
BtsCI GGATG 2 cut(s) 435, 755
BtuMI TCGCGA 1 cut(s) 786
Cac8I GCNNGC 4 cut(s) 261, 451, 926, 975
CciI TCATGA 1 cut(s) 477
CfoI GCGC 3 cut(s) 755, 866, 889
Cfr10I RCCGGY 1 cut(s) 910
Cfr13I GGNCC 3 cut(s) 938, 981, 1015
Cfr42I CCGCGG 1 cut(s) 1022
ClaI ATCGAT 1 cut(s) 552
CseI GACGC 2 cut(s) 894, 1230
Csp6I GTAC 2 cut(s) 868, 1144
CviAII CATG 5 cut(s) 204, 409, 478, 750, 810
CviQI GTAC 2 cut(s) 868, 1144
DdeI CTNAG 1 cut(s) 1212
DpnI GATC 6 cut(s) 24, 211, 236, 555, 606, 743
DpnII GATC 6 cut(s) 22, 209, 234, 553, 604, 741
DrdI GACNNNNNNGTC 3 cut(s) 53, 832, 1162
DseDI GACNNNNNNGTC 3 cut(s) 53, 832, 1162
EciI GGCGGA 1 cut(s) 269
Eco130I CCWWGG 2 cut(s) 809, 941
Eco47I GGWCC 3 cut(s) 938, 981, 1015
Eco57I CTGAAG 1 cut(s) 285
Eco72I CACGTG 1 cut(s) 1231
EcoNI CCTNNNNNAGG 1 cut(s) 581
EcoO109I RGGNCCY 1 cut(s) 1015
EcoT14I CCWWGG 2 cut(s) 809, 941
ErhI CCWWGG 2 cut(s) 809, 941
FaeI CATG 5 cut(s) 207, 412, 481, 753, 813
FaiI YATR 9 cut(s) 205, 351, 410, 479, 485, 682, 751, 811, 1161
FalI AAGNNNNNCTT 2 cut(s) 51, 83
FaqI GGGAC 1 cut(s) 1028
FatI CATG 5 cut(s) 203, 408, 477, 749, 809
FauI CCCGC 1 cut(s) 1026
FblI GTMKAC 2 cut(s) 304, 1138
Fnu4HI GCNGC 2 cut(s) 177, 915
FokI GGATG 2 cut(s) 422, 742
Fsp4HI GCNGC 2 cut(s) 177, 915
FspAI RTGCGCAY 1 cut(s) 754
FspBI CTAG 5 cut(s) 450, 762, 848, 918, 978
FspI TGCGCA 1 cut(s) 754
GlaI GCGC 3 cut(s) 754, 865, 888
GluI GCNGC 2 cut(s) 177, 915
HaeIII GGCC 1 cut(s) 1177
HapII CCGG 3 cut(s) 911, 1052, 1066
HgaI GACGC 2 cut(s) 894, 1230
HhaI GCGC 3 cut(s) 755, 866, 889
Hin1I GRCGYC 1 cut(s) 1222
Hin1II CATG 5 cut(s) 207, 412, 481, 753, 813
Hin6I GCGC 3 cut(s) 753, 864, 887
HinP1I GCGC 3 cut(s) 753, 864, 887
HincII GTYRAC 2 cut(s) 366, 825
HindII GTYRAC 2 cut(s) 366, 825
HinfI GANTC 7 cut(s) 141, 650, 693, 708, 792, 1073, 1106
HpaII CCGG 3 cut(s) 911, 1052, 1066
HphI GGTGA 3 cut(s) 766, 867, 900
Hpy166II GTNNAC 6 cut(s) 83, 249, 305, 366, 825, 1139
Hpy188I TCNGA 4 cut(s) 342, 969, 1004, 1215
Hpy188III TCNNGA 7 cut(s) 145, 290, 414, 478, 647, 690, 785
Hpy8I GTNNAC 6 cut(s) 83, 249, 305, 366, 825, 1139
Hpy99I CGWCG 6 cut(s) 50, 284, 299, 425, 668, 791
HpyAV CCTTC 6 cut(s) 13, 86, 260, 553, 570, 577
HpyCH4III ACNGT 7 cut(s) 186, 363, 778, 802, 992, 1143, 1248
HpyCH4IV ACGT 8 cut(s) 279, 370, 420, 716, 821, 833, 1080, 1230
HpyCH4V TGCA 1 cut(s) 637
HpyF10VI GCNNNNNNNGC 5 cut(s) 260, 281, 352, 886, 911
HpyF3I CTNAG 1 cut(s) 1212
HpySE526I ACGT 8 cut(s) 279, 370, 420, 716, 821, 833, 1080, 1230
Hsp92I GRCGYC 1 cut(s) 1222
Hsp92II CATG 5 cut(s) 207, 412, 481, 753, 813
HspAI GCGC 3 cut(s) 753, 864, 887
KflI GGGWCCC 1 cut(s) 1015
KspI CCGCGG 1 cut(s) 1022
Kzo9I GATC 6 cut(s) 22, 209, 234, 553, 604, 741
LmnI GCTCC 2 cut(s) 256, 948
LpnPI CCDG 8 cut(s) 92, 270, 427, 846, 924, 987, 1065, 1079
Lsp1109I GCAGC 1 cut(s) 188
LweI GCATC 4 cut(s) 436, 476, 764, 960
MaeI CTAG 5 cut(s) 450, 762, 848, 918, 978
MaeII ACGT 8 cut(s) 279, 370, 420, 716, 821, 833, 1080, 1230
MaeIII GTNAC 6 cut(s) 119, 490, 906, 992, 1074, 1226
MalI GATC 6 cut(s) 24, 211, 236, 555, 606, 743
MbiI CCGCTC 1 cut(s) 1183
MboI GATC 6 cut(s) 22, 209, 234, 553, 604, 741
MboII GAAGA 7 cut(s) 59, 181, 204, 448, 946, 1033, 1054
MflI RGATCY 2 cut(s) 209, 604
MluCI AATT 1 cut(s) 428
MlyI GAGTC 4 cut(s) 644, 702, 786, 1082
MnlI CCTC 8 cut(s) 102, 385, 567, 709, 769, 939, 1038, 1167
MroXI GAANNNNTTC 1 cut(s) 63
MseI TTAA 4 cut(s) 102, 188, 327, 882
MslI CAYNNNNRTG 3 cut(s) 488, 599, 968
MspA1I CMGCKG 1 cut(s) 1021
MspI CCGG 3 cut(s) 911, 1052, 1066
MvnI CGCG 6 cut(s) 786, 866, 887, 889, 905, 1021
MwoI GCNNNNNNNGC 5 cut(s) 260, 281, 352, 886, 911
NcoI CCATGG 1 cut(s) 809
NdeII GATC 6 cut(s) 22, 209, 234, 553, 604, 741
NheI GCTAGC 1 cut(s) 449
NlaIII CATG 5 cut(s) 207, 412, 481, 753, 813
NlaIV GGNNCC 3 cut(s) 1006, 1016, 1017
NmuCI GTSAC 5 cut(s) 490, 906, 992, 1074, 1226
NruI TCGCGA 1 cut(s) 786
NsbI TGCGCA 1 cut(s) 754
OliI CACNNNNGTG 1 cut(s) 599
PagI TCATGA 1 cut(s) 477
PcsI WCGNNNNNNNCGW 2 cut(s) 54, 774
PdmI GAANNNNTTC 1 cut(s) 63
PfeI GAWTC 3 cut(s) 141, 708, 1106
Pfl23II CGTACG 1 cut(s) 1143
PflFI GACNNNGTC 3 cut(s) 53, 800, 1224
PflMI CCANNNNNTGG 1 cut(s) 935
PkrI GCNGC 2 cut(s) 178, 916
PleI GAGTC 4 cut(s) 644, 701, 786, 1081
PmaCI CACGTG 1 cut(s) 1231
PmlI CACGTG 1 cut(s) 1231
PpsI GAGTC 4 cut(s) 644, 701, 786, 1081
Ppu21I YACGTR 1 cut(s) 1231
PpuMI RGGWCCY 1 cut(s) 1015
Psp5II RGGWCCY 1 cut(s) 1015
PspCI CACGTG 1 cut(s) 1231
PspLI CGTACG 1 cut(s) 1143
PspN4I GGNNCC 3 cut(s) 1006, 1016, 1017
PspPI GGNCC 3 cut(s) 938, 981, 1015
PspPPI RGGWCCY 1 cut(s) 1015
PsuI RGATCY 2 cut(s) 209, 604
PsyI GACNNNGTC 3 cut(s) 53, 800, 1224
RruI TCGCGA 1 cut(s) 786
RsaI GTAC 2 cut(s) 869, 1145
RsaNI GTAC 2 cut(s) 868, 1144
RseI CAYNNNNRTG 3 cut(s) 488, 599, 968
SacII CCGCGG 1 cut(s) 1022
SaqAI TTAA 4 cut(s) 102, 188, 327, 882
SatI GCNGC 2 cut(s) 177, 915
Sau3AI GATC 6 cut(s) 22, 209, 234, 553, 604, 741
Sau96I GGNCC 3 cut(s) 938, 981, 1015
SchI GAGTC 4 cut(s) 644, 702, 786, 1082
SfaNI GCATC 4 cut(s) 436, 476, 764, 960
Sfr303I CCGCGG 1 cut(s) 1022
SgrAI CRCCGGYG 1 cut(s) 910
SgrBI CCGCGG 1 cut(s) 1022
SinI GGWCC 3 cut(s) 938, 981, 1015
SmiMI CAYNNNNRTG 3 cut(s) 488, 599, 968
SmlI CTYRAG 2 cut(s) 145, 1124
SmoI CTYRAG 2 cut(s) 145, 1124
Sse9I AATT 1 cut(s) 428
SsiI CCGC 7 cut(s) 254, 322, 878, 914, 1019, 1021, 1181
SspMI CTAG 5 cut(s) 450, 762, 848, 918, 978
StyI CCWWGG 2 cut(s) 809, 941
TaaI ACNGT 7 cut(s) 186, 363, 778, 802, 992, 1143, 1248
TaiI ACGT 8 cut(s) 282, 373, 423, 719, 824, 836, 1083, 1233
TaqI TCGA 6 cut(s) 57, 423, 444, 552, 711, 795
TasI AATT 1 cut(s) 428
TauI GCSGC 1 cut(s) 917
TfiI GAWTC 3 cut(s) 141, 708, 1106
Tru1I TTAA 4 cut(s) 102, 188, 327, 882
Tru9I TTAA 4 cut(s) 102, 188, 327, 882
TseFI GTSAC 5 cut(s) 490, 906, 992, 1074, 1226
TseI GCWGC 1 cut(s) 176
Tsp45I GTSAC 5 cut(s) 490, 906, 992, 1074, 1226
TspDTI ATGAA 4 cut(s) 59, 192, 466, 494
TspGWI ACGGA 2 cut(s) 749, 804
Tth111I GACNNNGTC 3 cut(s) 53, 800, 1224
Van91I CCANNNNNTGG 1 cut(s) 935
VpaK11BI GGWCC 3 cut(s) 938, 981, 1015
XagI CCTNNNNNAGG 1 cut(s) 581
XmiI GTMKAC 2 cut(s) 304, 1138
XmnI GAANNNNTTC 1 cut(s) 63
XspI CTAG 5 cut(s) 450, 762, 848, 918, 978
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.