AT3G22410

Cellular retinaldehyde-binding triple function, C-terminal (InterPro IPR001251), Phosphatidylinositol transfer protein-like, N-terminal (InterPro IPR011074)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012073
Physical Location & Seq
Reverse (-)
7933119 .. 7935925
2807 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G22410.1

Sequence Viewer

Length: 1203 bp
ATGGGGAAGAAAGATGAGAAAGTCGAAGCTGTTCTTCGCTTGGTCAAGAAACAATCTCCACTCACTTTTAAACAAGAGAAGTTCTGTAACAGAGAGTGTGTTGAGAGATTCTTGAAGGTGAAAGGAGATAATGTGAAAAAAGCAGCGAAACAACTCAGTTCATGTCTTTCTTGGAGACAAAATTTCGATATTGAGCGATTGGGAGCAGAGGAGTTCTCGACGGAACTTAGCGACGGTGTAGCTTACATCTCCGGCCACGACAGAGAATCAAGACCCGTTATTATTTTCCGTTTTAAGCATGATTATCAGAAGCTGCATACCCAAAAACAATTTACGCGTTTGGTAGCGTTCACGATTGAGACTGCGATTTCAAGCATGTCCAGAAACACGGAACAGAGCTTTGTTCTTCTCTTTGATGCAAGCTTTTTCAGATCATCCTCTGCATTTGCGAATTTGCTTTTGGCGACCCTAAAAATCATCGCAGATAATTACCCATGCCGACTTTACAAAGCCTTTATCATCGACCCTCCCTCTTTTTTCTCTTACCTTTGGAAGGGTGTTCGTCCTTTTGTGGAGCTCTCAACGGCCACGATGATACTGTCGTCTCTAGACTACGACGAACCGCTAGATATCACCCACGTGTCATCAAATCCTCGATCAACATCTTTAAGATTCGACGCATCGTCGATTAAATCAACGGCCTCGATTGGTTCAGCTTCTTCAAGATTCGCTTTCACAGTCTCTCAGAACTCGTTGAAGCCGTGGTATCTTTCCTTCACCGACACGTCACCTTATAACCCCGCCGTCTCATCCTCCGCCGCTGCTCCTGTTTCTCCTCTCAGTGCACGGTCGTTACCCTTCGCGTCTCCGGCGGTGCGTGGTTTCAAAGACGCGAAACCAGCCGCATGCAGAAAGAGTCTGTTTCCATCGACGCCGTTGCCGGAGAAGACAAAGACGGTTTCGTATCGGAAAACTCCACGTCCTTCGTTCTTTCAGTCGCCGGCGATGTTCTTTCGTCGGGAGAACAATGTCGGTGGAGGAGGCGAGAAGTCACGTGAAGCGTTTGTACCGTATCTGAAGTTTTACCGGAGACCGTACGATGAGACTGCGTATAGGTCTAAGTTACGTGGTCCACGTGGATTTCTGTCGGTCGTGTCTTCTCACAGAAGATCTCGCCACGTGTCTTTATCTCAACGGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO

Protein Analysis

400

Amino Acids

45.28

Weight (kDa)

10.0

Isoelectric Point (pI)

58.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO PF00650 77 - 196 1.7e-21 CRAL/TRIO domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012073)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05370 AT3G22410
fragaria_vesca FvH4_4g15420 FvH4_4g15420
malus_domestica MD13G1192100.v1.1 MD16G1192700.v1.1
prunus_persica Prupe.1G012800_v2.0.a1
pyrus_communis pycom13g16480 pycom16g16260
rosa_chinensis RchiOBHm_Chr4g0416361
rosa_laevigata RLG00000007989
rosa_multiflora Rmu_sc0001488.1_g000005
rosa_roxburghii Rroxscaffold_5G00360210
rosa_rugosa Rorug04G0141300
rosa_samantha Rh4AG203700 Rh4BG200900 Rh4CG214900 Rh4DG200600
rosa_wichuraiana Rw4G017200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 795
AccII CGCG 3 cut(s) 337, 863, 893
AciI CCGC 6 cut(s) 623, 801, 816, 819, 872, 903
AcoI YGGCCR 2 cut(s) 253, 585
AcsI RAATTY 2 cut(s) 181, 451
AcuI CTGAAG 1 cut(s) 1097
AcvI CACGTG 4 cut(s) 640, 1055, 1136, 1180
AcyI GRCGYC 1 cut(s) 932
AfaI GTAC 2 cut(s) 1068, 1097
AfiI CCNNNNNNNGG 1 cut(s) 553
AflIII ACRYGT 4 cut(s) 335, 639, 783, 1179
AgsI TTSAA 5 cut(s) 115, 372, 723, 757, 886
AhdI GACNNNNNGTC 1 cut(s) 682
AjiI CACGTC 2 cut(s) 786, 980
AjuI GAANNNNNNNTTGG 2 cut(s) 443, 475
AleI CACNNNNGTG 1 cut(s) 638
AluBI AGCT 7 cut(s) 29, 242, 313, 399, 423, 577, 716
AluI AGCT 7 cut(s) 29, 242, 313, 399, 423, 577, 716
Alw21I GWGCWC 2 cut(s) 579, 847
Alw26I GTCTC 8 cut(s) 169, 353, 609, 745, 811, 870, 1084, 1097
Alw44I GTGCAC 1 cut(s) 843
AlwNI CAGNNNCTG 1 cut(s) 313
AoxI GGCC 3 cut(s) 253, 585, 699
ApaLI GTGCAC 1 cut(s) 843
ApeKI GCWGC 3 cut(s) 143, 313, 821
ApoI RAATTY 2 cut(s) 181, 451
Asp700I GAANNNNTTC 1 cut(s) 30
AspS9I GGNCC 1 cut(s) 1130
AsuHPI GGTGA 4 cut(s) 130, 625, 769, 780
AvaII GGWCC 1 cut(s) 1130
BaeGI GKGCMC 1 cut(s) 847
BaeI ACNNNNGTAYC 2 cut(s) 587, 620
BanII GRGCYC 1 cut(s) 579
BarI GAAGNNNNNNTAC 4 cut(s) 758, 790, 1050, 1082
BbrPI CACGTG 4 cut(s) 640, 1055, 1136, 1180
BbsI GAAGAC 2 cut(s) 953, 1149
Bbv12I GWGCWC 2 cut(s) 579, 847
BbvI GCAGC 3 cut(s) 155, 300, 808
BccI CCATC 1 cut(s) 934
BceAI ACGGC 5 cut(s) 600, 714, 745, 788, 919
BcgI CGANNNNNNTGC 4 cut(s) 919, 953, 1088, 1122
BcoDI GTCTC 8 cut(s) 169, 353, 609, 745, 811, 870, 1084, 1097
BfaI CTAG 2 cut(s) 608, 626
BglII AGATCT 1 cut(s) 1169
BisI GCNGC 5 cut(s) 144, 314, 819, 822, 903
BlsI GCNGC 5 cut(s) 145, 315, 820, 823, 904
Bme18I GGWCC 1 cut(s) 1130
BmeRI GACNNNNNGTC 1 cut(s) 682
BmgBI CACGTC 2 cut(s) 786, 980
BmgT120I GGNCC 1 cut(s) 1130
BmsI GCATC 2 cut(s) 406, 689
BpiI GAAGAC 2 cut(s) 953, 1149
BplI GAGNNNNNCTC 2 cut(s) 200, 232
BsaAI YACGTR 5 cut(s) 640, 1055, 1127, 1136, 1180
BsaBI GATNNNNATC 1 cut(s) 661
BsaHI GRCGYC 1 cut(s) 932
BsaI GGTCTC 1 cut(s) 1084
BsaJI CCNNGG 1 cut(s) 761
BsaWI WCCGGW 1 cut(s) 1086
BsaXI ACNNNNNCTCC 2 cut(s) 117, 147
Bsc4I CCNNNNNNNGG 1 cut(s) 553
Bse118I RCCGGY 1 cut(s) 1000
Bse8I GATNNNNATC 1 cut(s) 661
BseDI CCNNGG 1 cut(s) 761
BseGI GGATG 2 cut(s) 434, 809
BseJI GATNNNNATC 1 cut(s) 661
BseLI CCNNNNNNNGG 1 cut(s) 553
BseMII CTCAG 3 cut(s) 169, 758, 853
BseRI GAGGAG 3 cut(s) 224, 825, 1053
BseSI GKGCMC 1 cut(s) 847
BseXI GCAGC 3 cut(s) 155, 300, 808
Bsh1236I CGCG 3 cut(s) 337, 863, 893
Bsh1285I CGRYCG 2 cut(s) 851, 1152
BshFI GGCC 3 cut(s) 255, 587, 701
BsiEI CGRYCG 2 cut(s) 851, 1152
BsiHKAI GWGCWC 2 cut(s) 579, 847
BsiSI CCGG 5 cut(s) 252, 869, 941, 1001, 1087
BsiWI CGTACG 1 cut(s) 1095
BslI CCNNNNNNNGG 1 cut(s) 553
BsmAI GTCTC 8 cut(s) 169, 353, 609, 745, 811, 870, 1084, 1097
BsmBI CGTCTC 3 cut(s) 609, 811, 870
BsnI GGCC 3 cut(s) 255, 587, 701
Bso31I GGTCTC 1 cut(s) 1084
Bsp1286I GDGCHC 2 cut(s) 579, 847
Bsp143I GATC 3 cut(s) 431, 656, 1169
BspACI CCGC 6 cut(s) 623, 801, 816, 819, 872, 903
BspANI GGCC 3 cut(s) 255, 587, 701
BspCNI CTCAG 3 cut(s) 168, 757, 852
BspFNI CGCG 3 cut(s) 337, 863, 893
BspTNI GGTCTC 1 cut(s) 1084
BsrFI RCCGGY 1 cut(s) 1000
BssAI RCCGGY 1 cut(s) 1000
BssECI CCNNGG 1 cut(s) 761
BssMI GATC 3 cut(s) 431, 656, 1169
BssNI GRCGYC 1 cut(s) 932
Bst4CI ACNGT 8 cut(s) 236, 600, 739, 849, 958, 1071, 1095, 1197
BstACI GRCGYC 1 cut(s) 932
BstBAI YACGTR 5 cut(s) 640, 1055, 1127, 1136, 1180
BstC8I GCNNGC 3 cut(s) 421, 907, 1002
BstDEI CTNAG 5 cut(s) 155, 227, 744, 839, 1119
BstDSI CCRYGG 1 cut(s) 761
BstENI CCTNNNNNAGG 1 cut(s) 551
BstF5I GGATG 2 cut(s) 434, 809
BstFNI CGCG 3 cut(s) 337, 863, 893
BstKTI GATC 3 cut(s) 434, 659, 1172
BstMAI GTCTC 8 cut(s) 169, 353, 609, 745, 811, 870, 1084, 1097
BstMBI GATC 3 cut(s) 431, 656, 1169
BstMCI CGRYCG 2 cut(s) 851, 1152
BstMWI GCNNNNNNNGC 2 cut(s) 869, 899
BstNSI RCATGY 2 cut(s) 379, 909
BstSLI GKGCMC 1 cut(s) 847
BstUI CGCG 3 cut(s) 337, 863, 893
BstV1I GCAGC 3 cut(s) 155, 300, 808
BstV2I GAAGAC 2 cut(s) 953, 1149
BstX2I RGATCY 1 cut(s) 1169
BstYI RGATCY 1 cut(s) 1169
BsuRI GGCC 3 cut(s) 255, 587, 701
BtgI CCRYGG 1 cut(s) 761
BtgZI GCGATG 2 cut(s) 463, 1019
BtrI CACGTC 2 cut(s) 786, 980
BtsCI GGATG 2 cut(s) 434, 809
BtsIMutI CAGTG 1 cut(s) 847
Cac8I GCNNGC 3 cut(s) 421, 907, 1002
CaiI CAGNNNCTG 1 cut(s) 313
Cfr10I RCCGGY 1 cut(s) 1000
Cfr13I GGNCC 1 cut(s) 1130
CseI GACGC 4 cut(s) 686, 852, 899, 940
Csp6I GTAC 2 cut(s) 1067, 1096
CspCI CAANNNNNGTGG 2 cut(s) 1015, 1050
CviAII CATG 5 cut(s) 162, 299, 376, 495, 906
CviQI GTAC 2 cut(s) 1067, 1096
DdeI CTNAG 5 cut(s) 155, 227, 744, 839, 1119
DpnI GATC 3 cut(s) 433, 658, 1171
DpnII GATC 3 cut(s) 431, 656, 1169
DraI TTTAAA 1 cut(s) 70
DriI GACNNNNNGTC 1 cut(s) 682
EaeI YGGCCR 2 cut(s) 253, 585
Eam1105I GACNNNNNGTC 1 cut(s) 682
EciI GGCGGA 1 cut(s) 805
Ecl136II GAGCTC 1 cut(s) 577
Eco24I GRGCYC 1 cut(s) 579
Eco31I GGTCTC 1 cut(s) 1084
Eco32I GATATC 1 cut(s) 631
Eco47I GGWCC 1 cut(s) 1130
Eco53kI GAGCTC 1 cut(s) 577
Eco57I CTGAAG 1 cut(s) 1097
Eco72I CACGTG 4 cut(s) 640, 1055, 1136, 1180
EcoICRI GAGCTC 1 cut(s) 577
EcoNI CCTNNNNNAGG 1 cut(s) 551
EcoRV GATATC 1 cut(s) 631
EcoT38I GRGCYC 1 cut(s) 579
Esp3I CGTCTC 3 cut(s) 609, 811, 870
FaeI CATG 5 cut(s) 165, 302, 379, 498, 909
FaiI YATR 8 cut(s) 163, 300, 318, 377, 496, 795, 907, 1113
FalI AAGNNNNNCTT 4 cut(s) 18, 50, 715, 747
FatI CATG 5 cut(s) 161, 298, 375, 494, 905
FauI CCCGC 1 cut(s) 808
Fnu4HI GCNGC 5 cut(s) 144, 314, 819, 822, 903
FokI GGATG 2 cut(s) 421, 796
FriOI GRGCYC 1 cut(s) 579
Fsp4HI GCNGC 5 cut(s) 144, 314, 819, 822, 903
FspBI CTAG 2 cut(s) 608, 626
GluI GCNGC 5 cut(s) 144, 314, 819, 822, 903
HaeIII GGCC 3 cut(s) 255, 587, 701
HapII CCGG 5 cut(s) 252, 869, 941, 1001, 1087
HgaI GACGC 4 cut(s) 686, 852, 899, 940
Hin1I GRCGYC 1 cut(s) 932
Hin1II CATG 5 cut(s) 165, 302, 379, 498, 909
HindIII AAGCTT 1 cut(s) 421
HinfI GANTC 5 cut(s) 108, 266, 672, 726, 916
HpaII CCGG 5 cut(s) 252, 869, 941, 1001, 1087
HphI GGTGA 4 cut(s) 130, 625, 769, 780
Hpy166II GTNNAC 3 cut(s) 351, 845, 1133
Hpy188I TCNGA 6 cut(s) 309, 431, 747, 969, 1077, 1202
Hpy188III TCNNGA 9 cut(s) 46, 112, 217, 270, 352, 381, 608, 723, 1019
Hpy8I GTNNAC 3 cut(s) 351, 845, 1133
Hpy99I CGWCG 7 cut(s) 223, 236, 620, 680, 688, 934, 1020
HpyAV CCTTC 5 cut(s) 109, 547, 784, 868, 993
HpyCH4III ACNGT 8 cut(s) 236, 600, 739, 849, 958, 1071, 1095, 1197
HpyCH4IV ACGT 7 cut(s) 639, 785, 979, 1054, 1126, 1135, 1179
HpyCH4V TGCA 5 cut(s) 316, 419, 443, 845, 909
HpyF10VI GCNNNNNNNGC 2 cut(s) 869, 899
HpyF3I CTNAG 5 cut(s) 155, 227, 744, 839, 1119
HpySE526I ACGT 7 cut(s) 639, 785, 979, 1054, 1126, 1135, 1179
Hsp92I GRCGYC 1 cut(s) 932
Hsp92II CATG 5 cut(s) 165, 302, 379, 498, 909
KroI GCCGGC 1 cut(s) 1000
KroNI GCCGGC 1 cut(s) 1002
Kzo9I GATC 3 cut(s) 431, 656, 1169
LmnI GCTCC 3 cut(s) 203, 574, 829
LpnPI CCDG 8 cut(s) 265, 394, 840, 882, 912, 954, 1014, 1100
Lsp1109I GCAGC 3 cut(s) 155, 300, 808
LweI GCATC 2 cut(s) 406, 689
MaeI CTAG 2 cut(s) 608, 626
MaeII ACGT 7 cut(s) 639, 785, 979, 1054, 1126, 1135, 1179
MaeIII GTNAC 5 cut(s) 86, 786, 852, 1050, 1122
MalI GATC 3 cut(s) 433, 658, 1171
MboI GATC 3 cut(s) 431, 656, 1169
MboII GAAGA 7 cut(s) 19, 26, 398, 711, 958, 1149, 1179
MflI RGATCY 1 cut(s) 1169
MhlI GDGCHC 2 cut(s) 579, 847
MluCI AATT 4 cut(s) 181, 329, 451, 487
MluI ACGCGT 1 cut(s) 335
MlyI GAGTC 1 cut(s) 925
MreI CGCCGGCG 1 cut(s) 1000
MroNI GCCGGC 1 cut(s) 1000
MroXI GAANNNNTTC 1 cut(s) 30
MseI TTAA 4 cut(s) 69, 294, 668, 690
MslI CAYNNNNRTG 1 cut(s) 638
MspA1I CMGCKG 1 cut(s) 821
MspI CCGG 5 cut(s) 252, 869, 941, 1001, 1087
MvnI CGCG 3 cut(s) 337, 863, 893
MwoI GCNNNNNNNGC 2 cut(s) 869, 899
NaeI GCCGGC 1 cut(s) 1002
NdeII GATC 3 cut(s) 431, 656, 1169
NgoMIV GCCGGC 1 cut(s) 1000
NlaIII CATG 5 cut(s) 165, 302, 379, 498, 909
NmuCI GTSAC 2 cut(s) 786, 1050
NspI RCATGY 2 cut(s) 379, 909
OliI CACNNNNGTG 1 cut(s) 638
PaeI GCATGC 1 cut(s) 909
PcsI WCGNNNNNNNCGW 2 cut(s) 758, 1132
PdiI GCCGGC 1 cut(s) 1002
PdmI GAANNNNTTC 1 cut(s) 30
PfeI GAWTC 4 cut(s) 108, 266, 672, 726
Pfl23II CGTACG 1 cut(s) 1095
PkrI GCNGC 5 cut(s) 145, 315, 820, 823, 904
PleI GAGTC 1 cut(s) 924
PmaCI CACGTG 4 cut(s) 640, 1055, 1136, 1180
PmlI CACGTG 4 cut(s) 640, 1055, 1136, 1180
PpsI GAGTC 1 cut(s) 924
Ppu21I YACGTR 5 cut(s) 640, 1055, 1127, 1136, 1180
PsiI TTATAA 1 cut(s) 795
Psp124BI GAGCTC 1 cut(s) 579
PspCI CACGTG 4 cut(s) 640, 1055, 1136, 1180
PspLI CGTACG 1 cut(s) 1095
PspPI GGNCC 1 cut(s) 1130
PstNI CAGNNNCTG 1 cut(s) 313
PsuI RGATCY 1 cut(s) 1169
RsaI GTAC 2 cut(s) 1068, 1097
RsaNI GTAC 2 cut(s) 1067, 1096
RseI CAYNNNNRTG 1 cut(s) 638
SacI GAGCTC 1 cut(s) 579
SaqAI TTAA 4 cut(s) 69, 294, 668, 690
SatI GCNGC 5 cut(s) 144, 314, 819, 822, 903
Sau3AI GATC 3 cut(s) 431, 656, 1169
Sau96I GGNCC 1 cut(s) 1130
SchI GAGTC 1 cut(s) 925
SduI GDGCHC 2 cut(s) 579, 847
SfaNI GCATC 2 cut(s) 406, 689
SgrAI CRCCGGYG 1 cut(s) 1000
SinI GGWCC 1 cut(s) 1130
SmiMI CAYNNNNRTG 1 cut(s) 638
SphI GCATGC 1 cut(s) 909
Sse9I AATT 4 cut(s) 181, 329, 451, 487
SsiI CCGC 6 cut(s) 623, 801, 816, 819, 872, 903
SspMI CTAG 2 cut(s) 608, 626
SstI GAGCTC 1 cut(s) 579
TaaI ACNGT 8 cut(s) 236, 600, 739, 849, 958, 1071, 1095, 1197
TaiI ACGT 7 cut(s) 642, 788, 982, 1057, 1129, 1138, 1182
TaqI TCGA 9 cut(s) 24, 186, 218, 522, 655, 675, 686, 704, 929
TaqII GACCGA 1 cut(s) 1138
TasI AATT 4 cut(s) 181, 329, 451, 487
TauI GCSGC 2 cut(s) 821, 905
TfiI GAWTC 4 cut(s) 108, 266, 672, 726
Tru1I TTAA 4 cut(s) 69, 294, 668, 690
Tru9I TTAA 4 cut(s) 69, 294, 668, 690
TscAI CASTG 1 cut(s) 847
TseFI GTSAC 2 cut(s) 786, 1050
TseI GCWGC 3 cut(s) 143, 313, 821
Tsp45I GTSAC 2 cut(s) 786, 1050
TspDTI ATGAA 1 cut(s) 150
TspGWI ACGGA 3 cut(s) 236, 278, 404
TspRI CASTG 1 cut(s) 847
VneI GTGCAC 1 cut(s) 843
VpaK11BI GGWCC 1 cut(s) 1130
XagI CCTNNNNNAGG 1 cut(s) 551
XapI RAATTY 2 cut(s) 181, 451
XbaI TCTAGA 1 cut(s) 607
XceI RCATGY 2 cut(s) 379, 909
XmnI GAANNNNTTC 1 cut(s) 30
XspI CTAG 2 cut(s) 608, 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.