Rmu_sc0001488.1_g000005

CRAL/TRIO domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001488.1
OG0012073
Physical Location & Seq
Forward (+)
10351 .. 11194
844 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001488.1_g000005.1.cds

Sequence Viewer

Length: 372 bp
atgggcaagaaagatcagcaccagcaaataataagggatctcatgagagacaaccccaaagtcgaagccgttcttcaccttctcagaaaacaagccccgctgacggtaaaacaggagaagttttgtaacagtgcttgtgtgcagaggtttctgaaagcgaaaggggagagtgtgaagaagtcggccaaggcactcagagcttgcctttcctggagaaacactgttgggactgatcacttgatagcagatgagttctctgctgaacttgcagaaggcgttgcctacgtttctggtcatgatgaagaatccaggcctgttgtgattttccggttcaaacaagactaccaaaagttgcattcccagaaactgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO

Protein Analysis

123

Amino Acids

14.06

Weight (kDa)

9.48

Isoelectric Point (pI)

36.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012073)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05370 AT3G22410
fragaria_vesca FvH4_4g15420 FvH4_4g15420
malus_domestica MD13G1192100.v1.1 MD16G1192700.v1.1
prunus_persica Prupe.1G012800_v2.0.a1
pyrus_communis pycom13g16480 pycom16g16260
rosa_chinensis RchiOBHm_Chr4g0416361
rosa_laevigata RLG00000007989
rosa_multiflora Rmu_sc0001488.1_g000005
rosa_roxburghii Rroxscaffold_5G00360210
rosa_rugosa Rorug04G0141300
rosa_samantha Rh4AG203700 Rh4BG200900 Rh4CG214900 Rh4DG200600
rosa_wichuraiana Rw4G017200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 98
AclWI GGATC 1 cut(s) 45
AcoI YGGCCR 1 cut(s) 183
AfiI CCNNNNNNNGG 1 cut(s) 103
AgsI TTSAA 1 cut(s) 334
AjnI CCWGG 2 cut(s) 209, 308
AluBI AGCT 1 cut(s) 200
AluI AGCT 1 cut(s) 200
Alw26I GTCTC 1 cut(s) 42
AlwI GGATC 1 cut(s) 45
AlwNI CAGNNNCTG 1 cut(s) 367
AoxI GGCC 2 cut(s) 183, 311
Asp700I GAANNNNTTC 1 cut(s) 69
AsuHPI GGTGA 1 cut(s) 68
BceAI ACGGC 1 cut(s) 53
BciT130I CCWGG 2 cut(s) 211, 310
BclI TGATCA 1 cut(s) 232
BcoDI GTCTC 1 cut(s) 42
Bme1390I CCNGG 2 cut(s) 211, 310
BmrFI CCNGG 2 cut(s) 211, 310
BpmI CTGGAG 1 cut(s) 232
BsaJI CCNNGG 1 cut(s) 186
BsaWI WCCGGW 1 cut(s) 327
Bsc4I CCNNNNNNNGG 1 cut(s) 103
BseBI CCWGG 2 cut(s) 211, 310
BseDI CCNNGG 1 cut(s) 186
BseLI CCNNNNNNNGG 1 cut(s) 103
BseMII CTCAG 2 cut(s) 97, 208
BsgI GTGCAG 1 cut(s) 161
BshFI GGCC 2 cut(s) 185, 313
BsiSI CCGG 1 cut(s) 328
BslFI GGGAC 1 cut(s) 241
BslI CCNNNNNNNGG 1 cut(s) 103
BsmAI GTCTC 1 cut(s) 42
BsmFI GGGAC 1 cut(s) 241
BsmI GAATGC 1 cut(s) 355
BsnI GGCC 2 cut(s) 185, 313
Bsp143I GATC 3 cut(s) 13, 37, 232
BspACI CCGC 1 cut(s) 98
BspANI GGCC 2 cut(s) 185, 313
BspCNI CTCAG 2 cut(s) 96, 207
BspHI TCATGA 2 cut(s) 42, 295
BspPI GGATC 1 cut(s) 45
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 3 cut(s) 13, 37, 232
BssT1I CCWWGG 1 cut(s) 186
Bst2UI CCWGG 2 cut(s) 211, 310
Bst4CI ACNGT 4 cut(s) 106, 131, 223, 369
BstC8I GCNNGC 1 cut(s) 202
BstDEI CTNAG 2 cut(s) 83, 194
BstKTI GATC 3 cut(s) 16, 40, 235
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 3 cut(s) 13, 37, 232
BstMWI GCNNNNNNNGC 2 cut(s) 197, 266
BstNI CCWGG 2 cut(s) 211, 310
BstSCI CCNGG 2 cut(s) 209, 308
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
BsuRI GGCC 2 cut(s) 185, 313
BtsIMutI CAGTG 2 cut(s) 136, 219
Cac8I GCNNGC 1 cut(s) 202
CaiI CAGNNNCTG 1 cut(s) 367
CciI TCATGA 2 cut(s) 42, 295
CviAII CATG 2 cut(s) 43, 296
CviJI RGCY 5 cut(s) 68, 95, 185, 200, 313
CviKI_1 RGCY 5 cut(s) 68, 95, 185, 200, 313
DdeI CTNAG 2 cut(s) 83, 194
DpnI GATC 3 cut(s) 15, 39, 234
DpnII GATC 3 cut(s) 13, 37, 232
EaeI YGGCCR 1 cut(s) 183
Eco130I CCWWGG 1 cut(s) 186
Eco147I AGGCCT 1 cut(s) 313
EcoRII CCWGG 2 cut(s) 209, 308
EcoT14I CCWWGG 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 2 cut(s) 46, 299
FaiI YATR 2 cut(s) 44, 297
FalI AAGNNNNNCTT 2 cut(s) 57, 89
FaqI GGGAC 1 cut(s) 241
FatI CATG 2 cut(s) 42, 295
FauI CCCGC 1 cut(s) 105
FbaI TGATCA 1 cut(s) 232
GsuI CTGGAG 1 cut(s) 232
HaeIII GGCC 2 cut(s) 185, 313
HapII CCGG 1 cut(s) 328
Hin1II CATG 2 cut(s) 46, 299
HinfI GANTC 1 cut(s) 305
HpaII CCGG 1 cut(s) 328
HphI GGTGA 1 cut(s) 68
Hpy188I TCNGA 3 cut(s) 86, 153, 197
Hpy188III TCNNGA 2 cut(s) 43, 296
HpyAV CCTTC 2 cut(s) 89, 266
HpyCH4III ACNGT 4 cut(s) 106, 131, 223, 369
HpyCH4IV ACGT 1 cut(s) 285
HpyCH4V TGCA 3 cut(s) 142, 269, 355
HpyF10VI GCNNNNNNNGC 2 cut(s) 197, 266
HpyF3I CTNAG 2 cut(s) 83, 194
HpySE526I ACGT 1 cut(s) 285
Hsp92II CATG 2 cut(s) 46, 299
Ksp22I TGATCA 1 cut(s) 232
Kzo9I GATC 3 cut(s) 13, 37, 232
LpnPI CCDG 9 cut(s) 35, 98, 196, 223, 276, 295, 322, 327, 341
MaeII ACGT 1 cut(s) 285
MaeIII GTNAC 1 cut(s) 125
MalI GATC 3 cut(s) 15, 39, 234
MboI GATC 3 cut(s) 13, 37, 232
MboII GAAGA 3 cut(s) 65, 187, 314
MflI RGATCY 1 cut(s) 37
MnlI CCTC 1 cut(s) 138
MroXI GAANNNNTTC 1 cut(s) 69
MspA1I CMGCKG 1 cut(s) 100
MspI CCGG 1 cut(s) 328
MspR9I CCNGG 2 cut(s) 211, 310
Mva1269I GAATGC 1 cut(s) 355
MvaI CCWGG 2 cut(s) 211, 310
MwoI GCNNNNNNNGC 2 cut(s) 197, 266
NdeII GATC 3 cut(s) 13, 37, 232
NlaIII CATG 2 cut(s) 46, 299
PagI TCATGA 2 cut(s) 42, 295
PceI AGGCCT 1 cut(s) 313
PctI GAATGC 1 cut(s) 355
PdmI GAANNNNTTC 1 cut(s) 69
PfeI GAWTC 1 cut(s) 305
PfoI TCCNGGA 1 cut(s) 209
Psp6I CCWGG 2 cut(s) 209, 308
PspGI CCWGG 2 cut(s) 209, 308
PstNI CAGNNNCTG 1 cut(s) 367
PsuI RGATCY 1 cut(s) 37
Sau3AI GATC 3 cut(s) 13, 37, 232
ScrFI CCNGG 2 cut(s) 211, 310
SetI ASST 4 cut(s) 81, 149, 202, 288
SseBI AGGCCT 1 cut(s) 313
SsiI CCGC 1 cut(s) 98
StuI AGGCCT 1 cut(s) 313
StyD4I CCNGG 2 cut(s) 209, 308
StyI CCWWGG 1 cut(s) 186
TaaI ACNGT 4 cut(s) 106, 131, 223, 369
TaiI ACGT 1 cut(s) 288
TaqI TCGA 1 cut(s) 63
TfiI GAWTC 1 cut(s) 305
TscAI CASTG 2 cut(s) 136, 226
TspDTI ATGAA 1 cut(s) 315
TspRI CASTG 2 cut(s) 136, 226
XmnI GAANNNNTTC 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.