AT1G05410
MYB Family

PHD - plant homeodomain finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006336
Physical Location & Seq
Reverse (-)
1585371 .. 1587794
2424 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G05410.2

Sequence Viewer

Length: 1416 bp
ATGGACTCCATGGATATTGATCAAAGTAACATAGGTGAATCGCCTCACCTTCTGCTGAGACCAGTAAGTCCATTGGAATCTGGTGAAGGTTTACCTTATGCTCCTGAGAATTGGCCTAATCCTGGAGATACTTGGCATTGGAAGGTTGGACCGAGAATTAGCGGTAAAGGCTACTTCGTGGATAGATACTTATATCCTCCTAAGTATCTTCCCGGTTTAGATACTGAAATATTGCGGAAAAATAAGGTGTTTAGGAGCAGGCTCTCGCTCCAACGATATATTCGTGTACACTTCCCTGAAGCGGATGTTCAAAAGTTCTTTGCTTCTTTCAGCTGGAGCATACCCTGCAGAGATGGTCAAGGTGTTTTGCCTCAGAAGCAGGTTCAGTTACCAGTGTATAGCTCAGATGAAGATCCAATGCGTGATGATGGATCTGATACTGCGGTCTGTAAGGCTGGTAATGAAAAATGCCGGAGCCTGATGCCACAGTGCGAAGCCGAGACTTTACCTGCTATGCCTTGTGACATTTGCTGCGGTGAACGTAAGTTCTGCGTTGATTGCTGTTGCATCCTTTGCTGCAAGTTAATAAGTTTGGAGCATGGAGGCTATAGCTATATCAAATGTGAAGCTGTGGTTTCCGAGGGTCACATATGTGGACATGTTGCTCATATGAACTGTGCTCTTCGAGCTTATCTGGCTGGAACCATTGGAGGCAGCATGGGATTGGATACTGAATACTACTGCAGGCGATGTGACGCCAAAAAGGACTTGTTTCCACATGTCAACAAGTTTCTAGAAATATGTCAGACTGTAGAATATCAAGGCGACGTGGAGAAGATCCTGAATCTCGGTATTTGTATCTTGCGGGGAGCACAAAGAGACAATGCTAAGGAGCTATTAAATTGTATCGAATCAACAGTCATCAAGCTTAAATGTGGCACGAGCTTGGAAGATCTCTGGAATGATGATACACCAACTATATGGTCAGATTACTCCGACAGTGGAGAAGCTAGAGAAAATGATACATTGCAAAGTTTACAGGACGTGACTCCAATTGGGCCCATACCATTCAACCATGAGGCTGAGATGCACAAACTCGAAGAAGAAATCGGCGAGGTTCTAAGAGCGCTGAGAAAGGCTCAGGAATTTGAGTACCAAATTGCAGAAGGCAAACTTCATGCTCAGAAAGAATGTCTGAGTGATCTGTATAGGCAGCTCGAGAAGGAGAAGTCAGAGCTGTCGAGGCGAGTATCAGGTACAGATGCGAATAGCTTGATGACGAATGTGCTGAAGAGATTGGATCAGATTAGAAAAGAAGTCACAAAGCTTAAAGAAATGGAAGAAGTAGCCAAGGGATTTGGTAGGACACCTAGAGGGGTTCTTGAAGAGTACTTTCATCTAAACATCGAGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3 PHD_Oberon

Protein Analysis

471

Amino Acids

53.37

Weight (kDa)

5.3

Isoelectric Point (pI)

44.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7081 PF23299 22 - 89 2e-18 Domain of unknown function (DUF7081)
PHD_Oberon PF07227 126 - 259 3.6e-36 PHD - plant homeodomain finger protein
DUF7615 PF24590 332 - 437 1.4e-40 Domain of unknown function (DUF7615)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 66
Acc36I ACCTGC 2 cut(s) 370, 517
AciI CCGC 6 cut(s) 162, 235, 302, 443, 534, 865
AclWI GGATC 4 cut(s) 407, 439, 832, 1308
AcsI RAATTY 1 cut(s) 1145
AcuI CTGAAG 2 cut(s) 318, 1310
AcyI GRCGYC 1 cut(s) 756
AfaI GTAC 4 cut(s) 288, 1154, 1258, 1391
AfeI AGCGCT 1 cut(s) 1128
AfiI CCNNNNNNNGG 2 cut(s) 122, 301
AflIII ACRYGT 2 cut(s) 658, 778
AgsI TTSAA 3 cut(s) 311, 1072, 1385
AjiI CACGTC 2 cut(s) 829, 1045
AjnI CCWGG 1 cut(s) 121
AjuI GAANNNNNNNTTGG 2 cut(s) 264, 296
AleI CACNNNNGTG 1 cut(s) 651
Alw21I GWGCWC 2 cut(s) 682, 874
Alw26I GTCTC 3 cut(s) 52, 494, 873
AlwI GGATC 4 cut(s) 407, 439, 832, 1308
Ama87I CYCGRG 1 cut(s) 1217
Aor51HI AGCGCT 1 cut(s) 1128
AoxI GGCC 2 cut(s) 113, 1058
ApaI GGGCCC 1 cut(s) 1062
ApeKI GCWGC 4 cut(s) 531, 576, 714, 1213
ApoI RAATTY 1 cut(s) 1145
ArsI GACNNNNNNTTYG 2 cut(s) 903, 935
AspLEI GCGC 1 cut(s) 1129
AspS9I GGNCC 3 cut(s) 149, 1058, 1059
AsuC2I CCSGG 1 cut(s) 213
AsuHPI GGTGA 4 cut(s) 38, 47, 95, 548
AvaI CYCGRG 1 cut(s) 1217
AvaII GGWCC 1 cut(s) 149
BaeGI GKGCMC 1 cut(s) 1062
BaeI ACNNNNGTAYC 2 cut(s) 429, 462
BanII GRGCYC 1 cut(s) 1062
BauI CACGAG 1 cut(s) 940
Bbv12I GWGCWC 2 cut(s) 682, 874
BbvI GCAGC 4 cut(s) 518, 563, 726, 1225
BccI CCATC 2 cut(s) 347, 422
BciT130I CCWGG 1 cut(s) 123
BciVI GTATCC 1 cut(s) 721
BclI TGATCA 1 cut(s) 19
BcnI CCSGG 1 cut(s) 213
BcoDI GTCTC 3 cut(s) 52, 494, 873
BfaI CTAG 3 cut(s) 794, 1011, 1371
BfmI CTRYAG 4 cut(s) 346, 607, 742, 810
BfoI RGCGCY 1 cut(s) 1130
BfuAI ACCTGC 2 cut(s) 370, 517
BfuI GTATCC 1 cut(s) 721
BglII AGATCT 1 cut(s) 952
BisI GCNGC 4 cut(s) 532, 577, 715, 1214
BlsI GCNGC 4 cut(s) 533, 578, 716, 1215
BmcAI AGTACT 1 cut(s) 1391
Bme1390I CCNGG 2 cut(s) 123, 213
Bme18I GGWCC 1 cut(s) 149
BmeT110I CYCGRG 1 cut(s) 1217
BmgBI CACGTC 2 cut(s) 829, 1045
BmgT120I GGNCC 3 cut(s) 149, 1058, 1059
BmiI GGNNCC 3 cut(s) 476, 703, 1060
BmrFI CCNGG 2 cut(s) 123, 213
BmsI GCATC 4 cut(s) 471, 576, 1077, 1252
BplI GAGNNNNNCTC 2 cut(s) 1123, 1155
BpmI CTGGAG 2 cut(s) 144, 355
Bpu10I CCTNAGC 2 cut(s) 888, 1140
BpuMI CCSGG 1 cut(s) 213
BsaBI GATNNNNATC 2 cut(s) 18, 411
BsaHI GRCGYC 1 cut(s) 756
BsaI GGTCTC 1 cut(s) 52
BsaJI CCNNGG 3 cut(s) 9, 639, 1350
Bsc4I CCNNNNNNNGG 2 cut(s) 122, 301
Bse1I ACTGG 2 cut(s) 62, 392
Bse3DI GCAATG 1 cut(s) 1025
Bse8I GATNNNNATC 2 cut(s) 18, 411
BseBI CCWGG 1 cut(s) 123
BseDI CCNNGG 3 cut(s) 9, 639, 1350
BseGI GGATG 2 cut(s) 310, 567
BseJI GATNNNNATC 2 cut(s) 18, 411
BseLI CCNNNNNNNGG 2 cut(s) 122, 301
BseMI GCAATG 1 cut(s) 1025
BseMII CTCAG 9 cut(s) 47, 96, 386, 417, 1074, 1121, 1154, 1187, 1196
BseNI ACTGG 2 cut(s) 62, 392
BseSI GKGCMC 1 cut(s) 1062
BseXI GCAGC 4 cut(s) 518, 563, 726, 1225
BshFI GGCC 2 cut(s) 115, 1060
BsiHKAI GWGCWC 2 cut(s) 682, 874
BsiHKCI CYCGRG 1 cut(s) 1217
BsiSI CCGG 2 cut(s) 213, 472
BslI CCNNNNNNNGG 2 cut(s) 122, 301
BsmAI GTCTC 3 cut(s) 52, 494, 873
BsnI GGCC 2 cut(s) 115, 1060
Bso31I GGTCTC 1 cut(s) 52
BsoBI CYCGRG 1 cut(s) 1217
Bsp120I GGGCCC 1 cut(s) 1058
Bsp1286I GDGCHC 3 cut(s) 682, 874, 1062
Bsp1407I TGTACA 1 cut(s) 286
Bsp143I GATC 7 cut(s) 19, 412, 431, 837, 952, 1201, 1300
Bsp19I CCATGG 1 cut(s) 9
BspACI CCGC 6 cut(s) 162, 235, 302, 443, 534, 865
BspANI GGCC 2 cut(s) 115, 1060
BspCNI CTCAG 9 cut(s) 48, 97, 385, 416, 1075, 1122, 1153, 1188, 1195
BspLI GGNNCC 3 cut(s) 476, 703, 1060
BspMAI CTGCAG 2 cut(s) 350, 746
BspMI ACCTGC 2 cut(s) 370, 517
BspPI GGATC 4 cut(s) 407, 439, 832, 1308
BspQI GCTCTTC 1 cut(s) 687
BspTNI GGTCTC 1 cut(s) 52
BsrDI GCAATG 1 cut(s) 1025
BsrGI TGTACA 1 cut(s) 286
BsrI ACTGG 2 cut(s) 62, 392
BssECI CCNNGG 3 cut(s) 9, 639, 1350
BssMI GATC 7 cut(s) 19, 412, 431, 837, 952, 1201, 1300
BssNI GRCGYC 1 cut(s) 756
BssSI CACGAG 1 cut(s) 940
BssT1I CCWWGG 2 cut(s) 9, 1350
Bst2BI CACGAG 1 cut(s) 940
Bst2UI CCWGG 1 cut(s) 123
Bst4CI ACNGT 5 cut(s) 489, 677, 811, 919, 1001
Bst6I CTCTTC 3 cut(s) 687, 1286, 1380
BstACI GRCGYC 1 cut(s) 756
BstAPI GCANNNNNTGC 2 cut(s) 345, 573
BstAUI TGTACA 1 cut(s) 286
BstC8I GCNNGC 2 cut(s) 260, 746
BstDSI CCRYGG 1 cut(s) 9
BstF5I GGATG 2 cut(s) 310, 567
BstH2I RGCGCY 1 cut(s) 1130
BstHHI GCGC 1 cut(s) 1129
BstKTI GATC 7 cut(s) 22, 415, 434, 840, 955, 1204, 1303
BstMAI GTCTC 3 cut(s) 52, 494, 873
BstMBI GATC 7 cut(s) 19, 412, 431, 837, 952, 1201, 1300
BstMWI GCNNNNNNNGC 8 cut(s) 168, 345, 376, 558, 573, 686, 695, 1243
BstNI CCWGG 1 cut(s) 123
BstNSI RCATGY 2 cut(s) 662, 782
BstSCI CCNGG 2 cut(s) 121, 211
BstSFI CTRYAG 4 cut(s) 346, 607, 742, 810
BstSLI GKGCMC 1 cut(s) 1062
BstV1I GCAGC 4 cut(s) 518, 563, 726, 1225
BstX2I RGATCY 4 cut(s) 412, 431, 837, 952
BstXI CCANNNNNNTGG 1 cut(s) 981
BstYI RGATCY 4 cut(s) 412, 431, 837, 952
BsuI GTATCC 1 cut(s) 721
BsuRI GGCC 2 cut(s) 115, 1060
BtgI CCRYGG 1 cut(s) 9
BtgZI GCGATG 1 cut(s) 763
BtrI CACGTC 2 cut(s) 829, 1045
BtsCI GGATG 2 cut(s) 310, 567
BtsIMutI CAGTG 3 cut(s) 399, 494, 1006
BveI ACCTGC 2 cut(s) 370, 517
Cac8I GCNNGC 2 cut(s) 260, 746
CfoI GCGC 1 cut(s) 1129
Cfr13I GGNCC 3 cut(s) 149, 1058, 1059
CseI GACGC 1 cut(s) 764
Csp6I GTAC 4 cut(s) 287, 1153, 1257, 1390
CviAII CATG 7 cut(s) 10, 599, 659, 718, 779, 1076, 1178
CviQI GTAC 4 cut(s) 287, 1153, 1257, 1390
DpnI GATC 7 cut(s) 21, 414, 433, 839, 954, 1203, 1302
DpnII GATC 7 cut(s) 19, 412, 431, 837, 952, 1201, 1300
DrdI GACNNNNNNGTC 1 cut(s) 66
DseDI GACNNNNNNGTC 1 cut(s) 66
Eam1104I CTCTTC 3 cut(s) 687, 1286, 1380
EarI CTCTTC 3 cut(s) 687, 1286, 1380
Eco130I CCWWGG 2 cut(s) 9, 1350
Eco24I GRGCYC 1 cut(s) 1062
Eco31I GGTCTC 1 cut(s) 52
Eco47I GGWCC 1 cut(s) 149
Eco47III AGCGCT 1 cut(s) 1128
Eco57I CTGAAG 2 cut(s) 318, 1310
Eco88I CYCGRG 1 cut(s) 1217
EcoRII CCWGG 1 cut(s) 121
EcoT14I CCWWGG 2 cut(s) 9, 1350
EcoT38I GRGCYC 1 cut(s) 1062
ErhI CCWWGG 2 cut(s) 9, 1350
FaeI CATG 7 cut(s) 13, 602, 662, 721, 782, 1079, 1181
FalI AAGNNNNNCTT 2 cut(s) 1158, 1190
FatI CATG 7 cut(s) 9, 598, 658, 717, 778, 1075, 1177
FauI CCCGC 1 cut(s) 858
FauNDI CATATG 2 cut(s) 650, 669
FbaI TGATCA 1 cut(s) 19
Fnu4HI GCNGC 4 cut(s) 532, 577, 715, 1214
FokI GGATG 2 cut(s) 317, 554
FriOI GRGCYC 1 cut(s) 1062
Fsp4HI GCNGC 4 cut(s) 532, 577, 715, 1214
FspBI CTAG 3 cut(s) 794, 1011, 1371
GlaI GCGC 1 cut(s) 1128
GluI GCNGC 4 cut(s) 532, 577, 715, 1214
GsuI CTGGAG 2 cut(s) 144, 355
HaeII RGCGCY 1 cut(s) 1130
HaeIII GGCC 2 cut(s) 115, 1060
HapII CCGG 2 cut(s) 213, 472
HgaI GACGC 1 cut(s) 764
HhaI GCGC 1 cut(s) 1129
Hin1I GRCGYC 1 cut(s) 756
Hin1II CATG 7 cut(s) 13, 602, 662, 721, 782, 1079, 1181
Hin6I GCGC 1 cut(s) 1127
HinP1I GCGC 1 cut(s) 1127
HincII GTYRAC 1 cut(s) 784
HindII GTYRAC 1 cut(s) 784
HindIII AAGCTT 2 cut(s) 926, 1325
HinfI GANTC 6 cut(s) 5, 38, 77, 844, 911, 1048
HpaII CCGG 2 cut(s) 213, 472
HphI GGTGA 4 cut(s) 38, 47, 95, 548
Hpy166II GTNNAC 7 cut(s) 92, 287, 289, 539, 656, 784, 1037
Hpy188III TCNNGA 7 cut(s) 104, 794, 841, 958, 1142, 1219, 1382
Hpy8I GTNNAC 7 cut(s) 92, 287, 289, 539, 656, 784, 1037
Hpy99I CGWCG 1 cut(s) 830
HpyAV CCTTC 5 cut(s) 59, 80, 136, 1160, 1216
HpyCH4III ACNGT 5 cut(s) 489, 677, 811, 919, 1001
HpyCH4IV ACGT 3 cut(s) 541, 828, 1044
HpyCH4V TGCA 7 cut(s) 348, 567, 579, 744, 1030, 1090, 1163
HpyF10VI GCNNNNNNNGC 8 cut(s) 168, 345, 376, 558, 573, 686, 695, 1243
HpySE526I ACGT 3 cut(s) 541, 828, 1044
Hsp92I GRCGYC 1 cut(s) 756
Hsp92II CATG 7 cut(s) 13, 602, 662, 721, 782, 1079, 1181
HspAI GCGC 1 cut(s) 1127
Ksp22I TGATCA 1 cut(s) 19
Kzo9I GATC 7 cut(s) 19, 412, 431, 837, 952, 1201, 1300
LguI GCTCTTC 1 cut(s) 687
LmnI GCTCC 8 cut(s) 106, 255, 273, 336, 474, 595, 869, 892
Lsp1109I GCAGC 4 cut(s) 518, 563, 726, 1225
LweI GCATC 4 cut(s) 471, 576, 1077, 1252
MaeI CTAG 3 cut(s) 794, 1011, 1371
MaeII ACGT 3 cut(s) 541, 828, 1044
MaeIII GTNAC 7 cut(s) 26, 387, 521, 644, 752, 1045, 1318
MalI GATC 7 cut(s) 21, 414, 433, 839, 954, 1203, 1302
MboI GATC 7 cut(s) 19, 412, 431, 837, 952, 1201, 1300
MfeI CAATTG 1 cut(s) 1053
MflI RGATCY 4 cut(s) 412, 431, 837, 952
MhlI GDGCHC 3 cut(s) 682, 874, 1062
MluCI AATT 6 cut(s) 109, 156, 901, 1053, 1145, 1158
MlyI GAGTC 1 cut(s) 1042
MmeI TCCRAC 3 cut(s) 127, 295, 1020
MseI TTAA 4 cut(s) 584, 899, 930, 1329
MslI CAYNNNNRTG 1 cut(s) 651
MspA1I CMGCKG 1 cut(s) 333
MspI CCGG 2 cut(s) 213, 472
MspR9I CCNGG 2 cut(s) 123, 213
MunI CAATTG 1 cut(s) 1053
MvaI CCWGG 1 cut(s) 123
MwoI GCNNNNNNNGC 8 cut(s) 168, 345, 376, 558, 573, 686, 695, 1243
NciI CCSGG 1 cut(s) 213
NcoI CCATGG 1 cut(s) 9
NdeI CATATG 2 cut(s) 650, 669
NdeII GATC 7 cut(s) 19, 412, 431, 837, 952, 1201, 1300
NlaIII CATG 7 cut(s) 13, 602, 662, 721, 782, 1079, 1181
NlaIV GGNNCC 3 cut(s) 476, 703, 1060
NmeAIII GCCGAG 1 cut(s) 523
NmuCI GTSAC 5 cut(s) 521, 644, 752, 1045, 1318
NspI RCATGY 2 cut(s) 662, 782
OliI CACNNNNGTG 1 cut(s) 651
PaeR7I CTCGAG 1 cut(s) 1217
PciI ACATGT 2 cut(s) 658, 778
PciSI GCTCTTC 1 cut(s) 687
PcsI WCGNNNNNNNCGW 1 cut(s) 280
PfeI GAWTC 4 cut(s) 38, 77, 844, 911
PfoI TCCNGGA 1 cut(s) 121
PkrI GCNGC 4 cut(s) 533, 578, 716, 1215
PleI GAGTC 1 cut(s) 1042
PpsI GAGTC 1 cut(s) 1042
PscI ACATGT 2 cut(s) 658, 778
Psp6I CCWGG 1 cut(s) 121
PspGI CCWGG 1 cut(s) 121
PspN4I GGNNCC 3 cut(s) 476, 703, 1060
PspOMI GGGCCC 1 cut(s) 1058
PspPI GGNCC 3 cut(s) 149, 1058, 1059
PstI CTGCAG 2 cut(s) 350, 746
PsuI RGATCY 4 cut(s) 412, 431, 837, 952
PvuII CAGCTG 1 cut(s) 333
RsaI GTAC 4 cut(s) 288, 1154, 1258, 1391
RsaNI GTAC 4 cut(s) 287, 1153, 1257, 1390
RseI CAYNNNNRTG 1 cut(s) 651
SapI GCTCTTC 1 cut(s) 687
SaqAI TTAA 4 cut(s) 584, 899, 930, 1329
SatI GCNGC 4 cut(s) 532, 577, 715, 1214
Sau3AI GATC 7 cut(s) 19, 412, 431, 837, 952, 1201, 1300
Sau96I GGNCC 3 cut(s) 149, 1058, 1059
ScaI AGTACT 1 cut(s) 1391
SchI GAGTC 1 cut(s) 1042
ScrFI CCNGG 2 cut(s) 123, 213
SduI GDGCHC 3 cut(s) 682, 874, 1062
SfaNI GCATC 4 cut(s) 471, 576, 1077, 1252
SfcI CTRYAG 4 cut(s) 346, 607, 742, 810
Sfr274I CTCGAG 1 cut(s) 1217
SinI GGWCC 1 cut(s) 149
SlaI CTCGAG 1 cut(s) 1217
SmiMI CAYNNNNRTG 1 cut(s) 651
SmlI CTYRAG 1 cut(s) 1217
SmoI CTYRAG 1 cut(s) 1217
Sse9I AATT 6 cut(s) 109, 156, 901, 1053, 1145, 1158
SsiI CCGC 6 cut(s) 162, 235, 302, 443, 534, 865
SspI AATATT 1 cut(s) 231
SspMI CTAG 3 cut(s) 794, 1011, 1371
StyD4I CCNGG 2 cut(s) 121, 211
StyI CCWWGG 2 cut(s) 9, 1350
TaaI ACNGT 5 cut(s) 489, 677, 811, 919, 1001
TaiI ACGT 3 cut(s) 544, 831, 1047
TaqI TCGA 6 cut(s) 685, 909, 1098, 1218, 1241, 1407
TaqII GACCGA 1 cut(s) 166
TasI AATT 6 cut(s) 109, 156, 901, 1053, 1145, 1158
TatI WGTACW 2 cut(s) 286, 1389
TfiI GAWTC 4 cut(s) 38, 77, 844, 911
Tru1I TTAA 4 cut(s) 584, 899, 930, 1329
Tru9I TTAA 4 cut(s) 584, 899, 930, 1329
TscAI CASTG 3 cut(s) 399, 494, 1006
TseFI GTSAC 5 cut(s) 521, 644, 752, 1045, 1318
TseI GCWGC 4 cut(s) 531, 576, 714, 1213
Tsp45I GTSAC 5 cut(s) 521, 644, 752, 1045, 1318
TspDTI ATGAA 5 cut(s) 423, 477, 686, 1166, 1385
TspRI CASTG 3 cut(s) 399, 494, 1006
VpaK11BI GGWCC 1 cut(s) 149
XapI RAATTY 1 cut(s) 1145
XbaI TCTAGA 1 cut(s) 793
XceI RCATGY 2 cut(s) 662, 782
XhoI CTCGAG 1 cut(s) 1217
XspI CTAG 3 cut(s) 794, 1011, 1371
ZrmI AGTACT 1 cut(s) 1391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.