Rorug04G0137400
MYB Family

PHD - plant homeodomain finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0006336
Physical Location & Seq
Reverse (-)
22280863 .. 22296170
15308 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0137400.1

Sequence Viewer

Length: 5547 bp
ATGGCTCCCAAAACAGGGAAAGCCAAGCCACACAAATCCAAGGGAGACAAGAAGAAGAAAGAAGAGAAAGTTTTGCCTACCGTAATCGAGATTACCATTGAAACACCAGATGACTCGCAAGTGACCCTCAAGGGTATCTCTACGGACAGGATCTTAGATGTGAGAAAGCTGTTGGGGGTCCACGTAGATACATGTCATTTGACCAATTTCTCCCTATCACACGAGGTGCGAGGACCCAGACTGAAAGATACTGTGGACATCCTCTCTCTCAAACCCTGCCACCTCACCATCGTCGAAGAGGACTACACGGAAGAGCAAGCCGTGGCTCACATTCGAAGACTGGTTGACATCGTCGCCTGCACGACGTCGTTTGGGTCGTCGTCTTCTTCACCCAGAACCCCCGGTTCCGCCTCGGTTCCGGCTCCGGTTCGGTCGAGTTCTAAAGAGTCCGGTTTAGACGAGGGCGACGAGCACAATGCCGTTCCGAAGACCAAAGTTTCGAGTCCGATTCCGATCGCCGGCGAGAAAGGCGGCGAGTCGGCAATGTATCCTCCGCCGAGGCTCGGCCAGTTTTACGACTTCTTCTCCTTGTCTCACCTCACTCCTCCACTCCACTACGTTAGAAGATCTAGCCGTCCGTTCCTTGAGGACAAGGCAGAGGAGGACCTGTTTCAAATTGATGTTCGGGTTTGTAGTGGGAAGCCGACGACTATAGTAGCATCCAGAAAAGGGTTCTACCCTGCTGGAAAACGTCCTCTTATTACTCACTCTTTGGTTGCTTTGCTTCAACAGATAAGCCGGCCATTCGATGCTGCATACAATGCTGTCATGAAGGCTTTCACCGAGCACAATAAATTTGGGAACCTTCCTTATGGTTTTCGGGCAAACACATGGGTTGTCCCTCCGGTTGTTGCTGAGAACCCGTCTGTTTTCCCGCCACTTCCTCTAGAAGATGAAAATTGGGGAGGAAATGGGGGTGGGCAGGGAAGAGACGGTAAACACGATAACAGGCCATGGGCGAAAGAGTTTGCCATTCTTGCAGCAATGCCTTGTGCAACAGCAGAGGAGAGGCAAGTTCGAGATCGAAAGGCCTTTCTGCTTCACAGTTTATTTGTCGACGTCTCAGTTCTTAAAGCTGTTGCAGCTATTAAGAGCCTAATTGACACTCATCAGTCTTGCCTAAATGATTCCACTCTTTCACTTCATCATGAGGAAAAAATTGGAGATTTAATCATTAAGATCGTTAGAGATGCACCTGATGCAAGTGTAAAGGTGGATTGCAAGAATGATGGTAGTCGAGTTCTAGGAATGCCACAAGAAGAAGTTGCTCAGAGAAACCTACTGAAAGGCATAACAGCTGATGAGAGTGCAACTGTTCATGATACTTCTACACTAGGTGTTGTGGTTGTTAGGCATTGTGGATTTACTGCTGTTGTGAAAGTTTTAGCTGAGGTGAATTGGGTGGGGAAACCTGTTCCTCAGGACATTGAAATTGAGGACCAGCCTGAAGGAGGTGCAAATGCCTTGAATGTTAACAGCCTGAGAATGCTATTGCAACAGTCATCCCTCCTTCAGTCATCAACTACGGTTCAACGAAGCCAGAGTACAGATTTTGAAAATTTACGTTCTGCTAGGTCCTTAGTAAGGAAAGTACTCGAAGAAAGTTTATTAAGGTTGCAGGGTGGGCCATCTAATCACACCAAGTCGATCAGATGGGAGCTAGGAGCATGTTGGGTGCAACATTTGCAAAATCAGGTTTCAGCGAAAAATGAGCCTAAGAAAAATGAAGAAGCTAAGATAGAACCGGCTGTTAAGGGCCTCGGAAAGCAAGGTGGACTGCTAAAGGAAATAAAGAAGAAAATGGATATCAGGAGCAGTAAAACTGAACAGGGCAAGGAAGTTCTTGGGGGTAACAACCTTGATCTTAATAAGAATTCAGTCACCACCAGTCAGGAGGAGTTAGAAAAGCGAGATGCCGAAAAGGAAATAAATTGGAGAAGGCTACTTCCTGATGCATCCTATTCGCGGCTCAAAGAATCAGATACCGGTCTCCACCTTAAGTCACCTGATGAGTTGATTGAAATGGCACACAAGTATTACGCTGATACTGCACTTCCAAAACTGGTGGCAGATTTTGGCTCCCTTGAACTTTCACCAGTTGATGGAAGGACATTGACAGATTTTATGCATACAAGGGGTTTGCAAATGTGTTCCCTGGGACGCGTGGTTGAACTTGCAGATAAGCTCCCTCATGTACAATCACTCTGTATCCATGAGATGGTTGTGCGAGCATACAAACACATACTGCAAGCTGTTGTAGCAGCAGTTGATAATGTCGCAGACTTGGCTGCATCCATAGCAGCATGTCTAAATATTCTGCTAGGAACCCGATCACCTGAAAATGTGGATGGAGACATTACTTGTGAGGATACGTTAAAATGGAAGTGGGTGGAAACATTCCTTTTGAAGAGGTTTGGATGGCAATGGAAACATGAAAGCGTTGAGGACTTAAGAAAGTTTGCCATTCTTCGTGGATTGTGCCATAAGGTTGGCCTTGAGCTTGTGCCAAGGGACTATGATATGGACACTTCGTCTCCTTTTAGGAAATCAGATATAGTAAGCATGGTCCCTGTGTACAAGCATGTTGCATGTTCATCTGCTGATGGACGTACACTTCTGGAATCTTCCAAGACTTCCTTGGATAAAGGTAAACTGGAGGATGCTGTTAATTATGGCACTAAGGCGTTGTCAAAACTTGTATCAGTATGTGGGCCTTATCATCGAATGACTGCTGGAGCATATAGTCTTCTCGCTGTAGTACTGTATCACACTGGGGATTTTAATCAGGCAACCATCTATCAGCAAAAAGCATTGGATATTAATGAGAGAGAGCTTGGACTTGATCATCCTGATACAATGAAAAGTTACGGGGATTTAGCTGTGTTCTACTACCGACTTCAACATACAGAGTTGGCCTTGAAGTACGTCAATCGTGCGCTGTATCTATTGCACCTAACATGTGGGCCGTCTCATCCAAACACGGCTGCCACCTATATCAATGTAGCAATGATGGAAGAAGGTTTGGGGAACGTCCATGTTGCTCTTAGGTACCTCCATGAAGCTCTCAAGTGCAATCAAAGGCTACTTGGAGCTGATCATATACAGACTGCTGCTAGCTATCATGCCATAGCTATCGCACTTTCTTTGATGGAGGCATACTCGTTAAGTGTTCAGCACGAACAAACTACCTTGCAAATTCTGCAGGCGAAACTCGGGTCAGAGGATCTACGCACACAGGATGCGGCTGCATGGCTTGAGTATTTTGAGTCCAAAGCTTTGGAGCAGCAAGAAGCTGCACGGAATGGTACTCCAAAGCCAGATGCTTCAATCTCCAGCAAAGGTCATTTAAGTGTATCAGATCTTTTGGATTATATAACACCAGATGCTGATATGAAAGCTAGAGAGGCCCAAAGGAAAGCTCGTTTGAAGGTTAAAGGCAAACCAGGTCAGAACGGGGAGGCAGTCTCTGATGAGTACCAGAAGGATGAAAATTTGTTACCAAGTCATCCTGTTGCAGAGAATTTAAGTGATAAAGAGAACAAGTCTGAAGCACAATTAGGAGAACCTAGGAATGAGAAATATGATTCCCATCTACTTGAGCAATCAATAATATTTGCTACACATGATGATCTGGCACAAGATGACAACTCAGATGAAGGCTGGCAAGAGGCTGTTCCTAAAGGCCGGTCACTTATAGGTCGCAAATCTACTGGGTCAAGGAGGCCAAGCCTTGAAAAACTGAATACTAACTTTATCAATACATCCCAGTCATCAAGATATCGAGGCAAGGCCAATAATTTCACATCCCCCAAAACAAGCCCAAATGAGCCTGCTTCTTCAACTGGACCTGCTCCTCCAGTGTCAAAGAAGTTTGTCAAGAGTGCAAGCTTCAGTCCCAAGCAAAACAACTCTAGCACATCAGCTACCGGAGCTGCAGAGAGATTGCCAAACCCAAAGTCAGCACCATCTACCCCAGCTTCTGTTGATCAAGTCGTCAAGTCTGTAAGTCCGATCAGTGTTCAGTCAGCTGGAAAACTCTTTTCCTACAAAGAAGTTGCATTGGCTCCACCTGGGACAATTGTGAAGGCAGTGGCGGAGCAGTTACCAAAGCTGATTGTACAAATTTCTCAGGTGGGCCAGGAGACACCTACAACAGAGGTCAGTGTTGGTGAAGTGACTGCAATTAAAGATGTGAAGGATCAAAAAAATAAGAAATCGACAGGAGAGAAACAGGTTATGGTTTCTGAGAAAAGCCCTTCTGTAGTACGATCAGCAAAACTGAAGGATTCTGTGGCAAAGGAGTCCCTGGAAGTTGTGAAGCATGCTAGTGTTGGAGTACAAGTTGAAGCTGAATCTGAAGCTGTGGAATTAGAAAACACTGCTTTTGAAGGTGCAGAAGTTGAAAATGTAAAAGTTCCTGTTCCTAGTGTTGAGATTTCTGATGCTTCCCAAAGTCCAAATACCACAGCTGCTGAATGTGGACCATCAGACCCCCTAGGGCCAGACAGTTGCCCCAGGACTTCCTCTGATTCAGAACCTCCATCTGCTTTAACTGAGACTAGAACCAACAATCCTTCTAATACAGGGGAGGGAAAGTCACGTGATTTACCCAATGGCGACATAGTTAAACCAGTGCCAACTGGTGGGGAAAAGGTAGATGAACAAGAAACTGGAAAGGAGACGAGCAAAAAACTTTCTGCAGCCGCACCTCCTTTTAATCCATCCCCCATTCCAGTTTTTGGCTCAATTCCGGTTCCAGTTCCAGGTCTCAATGATCATGGAGGGATTTTGCCCCCACCTGTAAATATTCCTCCGATGCTTGCAGTTAATCCTGTCCGTAGATCACCTCATCAGTCAGCGACAGCAAGAGTTCCTTATGGTCCGCGACTTTCTGGTGGCTATAACAGATCTGGAAGTCGGGTTTCGCGTAATAAACATAGCTTTCACAATGGTGAGCACACCGGGGATGGTCCTCCCAGAATAATGAACCCACATGCAGCTGAGTTTGTACCTGGCCAACCTTGGGTTCAAAATGGCTATCCAGTGTCTCCCAATGGTTTCTTGCCTTCCCCAAATGGTTATCCAGTGTCCCCAAATGGATATCCGGTATCACCGAATGGTACTCCGGTGAATCAAAACGGGTCTCCGACATCTCCAGTCAGTTCAGATGAGTCATCACCAGTTGTGATTGCTGATATTGGTGTTGGAGTAAATACTGAAGGTGCAGCAAAGGAGACTGATGATAAGTTATCAGTACAAGTTGAATGTGACAAGCAACCAATTGAAGGAGAGCTGCAGGAAGAACAGTCTTTAGATAATGTAAACGTTCCTCCTGAAACTGAAGAAAAGCCTATTGATACCGATACAGTTCCTGGTGATACTATTGTGGAAAAGGAGACTAGCAATCTAGTAGTTGAGGAAAAACCAAGCAAATGTTGGGGAGATTATAGCGATAATGAAGCTGAGGTCATTGAGGTTAGTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3 PHD_Oberon

Protein Analysis

1848

Amino Acids

201.05

Weight (kDa)

5.97

Isoelectric Point (pI)

49.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CLU_N PF15044 48 - 118 3.4e-09 Mitochondrial function, CLU-N-term
eIF3_p135 PF12807 717 - 860 2.1e-23 Translation initiation factor eIF3 subunit 135
TPR_12 PF13424 901 - 962 2e-06 Tetratricopeptide repeat
TPR_NPHP3 PF24885 901 - 1000 2.8e-07 Nephrocystin-3 TPR domain
TPR_12 PF13424 930 - 1000 1.4e-12 Tetratricopeptide repeat
TPR_10 PF13374 930 - 971 2.1e-09 Tetratricopeptide repeat
TPR_12 PF13424 1014 - 1088 2.1e-10 Tetratricopeptide repeat
TPR_10 PF13374 1014 - 1054 4.2e-07 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 368, 1122
Acc36I ACCTGC 1 cut(s) 3916
Acc65I GGTACC 1 cut(s) 3108
AccB1I GGYRCC 1 cut(s) 3108
AccB7I CCANNNNNTGG 4 cut(s) 2162, 2278, 4703, 4799
AccI GTMKAC 1 cut(s) 1116
AccII CGCG 4 cut(s) 2026, 2223, 4945, 4987
AciI CCGC 9 cut(s) 408, 531, 554, 935, 2026, 3302, 4154, 4764, 4943
AclI AACGTT 1 cut(s) 5385
AclWI GGATC 3 cut(s) 158, 3291, 4266
AcoI YGGCCR 3 cut(s) 565, 800, 5074
AcsI RAATTY 7 cut(s) 854, 1618, 1933, 3255, 3550, 3580, 4182
AcuI CTGAAG 8 cut(s) 1527, 1556, 3627, 3934, 4361, 4437, 5298, 5421
AcvI CACGTG 1 cut(s) 4661
AcyI GRCGYC 2 cut(s) 365, 1119
AdeI CACNNNGTG 2 cut(s) 226, 1397
AflII CTTAAG 2 cut(s) 2057, 2509
AflIII ACRYGT 3 cut(s) 191, 2221, 3017
AgeI ACCGGT 1 cut(s) 2045
AhdI GACNNNNNGTC 1 cut(s) 2590
AjnI CCWGG 9 cut(s) 2214, 3502, 4129, 4197, 4365, 4574, 4822, 5071, 5431
AjuI GAANNNNNNNTTGG 2 cut(s) 5070, 5102
AleI CACNNNNGTG 1 cut(s) 5010
AloI GAACNNNNNNTCC 2 cut(s) 4615, 4647
Alw21I GWGCWC 3 cut(s) 474, 849, 5019
AlwI GGATC 3 cut(s) 158, 3291, 4266
AlwNI CAGNNNCTG 5 cut(s) 3446, 3527, 4040, 4532, 5432
Ama87I CYCGRG 1 cut(s) 3272
ApoI RAATTY 7 cut(s) 854, 1618, 1933, 3255, 3550, 3580, 4182
ArsI GACNNNNNNTTYG 6 cut(s) 481, 513, 3260, 3292, 4001, 4033
AseI ATTAAT 1 cut(s) 2880
AsiGI ACCGGT 1 cut(s) 2045
Asp700I GAANNNNTTC 1 cut(s) 836
Asp718I GGTACC 1 cut(s) 3108
AspA2I CCTAGG 2 cut(s) 3626, 4555
AspLEI GCGC 1 cut(s) 2998
AsuC2I CCSGG 2 cut(s) 402, 5023
AsuII TTCGAA 1 cut(s) 334
AsuNHI GCTAGC 1 cut(s) 3173
AvaI CYCGRG 1 cut(s) 3272
AvrII CCTAGG 2 cut(s) 3626, 4555
AxyI CCTNAGG 1 cut(s) 1479
BaeI ACNNNNGTAYC 4 cut(s) 5172, 5205, 5430, 5463
BalI TGGCCA 1 cut(s) 5076
BanI GGYRCC 1 cut(s) 3108
BarI GAAGNNNNNNTAC 2 cut(s) 1588, 1620
BauI CACGAG 1 cut(s) 221
BbrPI CACGTG 1 cut(s) 4661
BbsI GAAGAC 4 cut(s) 343, 375, 494, 2798
Bbv12I GWGCWC 3 cut(s) 474, 849, 5019
BbvCI CCTCAGC 2 cut(s) 1449, 5523
BceAI ACGGC 5 cut(s) 305, 464, 618, 3010, 3057
BcgI CGANNNNNNTGC 4 cut(s) 458, 492, 2004, 2038
BciT130I CCWGG 9 cut(s) 2216, 3504, 4131, 4199, 4367, 4576, 4824, 5073, 5433
BciVI GTATCC 3 cut(s) 558, 2279, 2422
BclI TGATCA 4 cut(s) 2902, 3154, 4045, 4834
BcnI CCSGG 2 cut(s) 402, 5023
BfmI CTRYAG 7 cut(s) 711, 2814, 3260, 3993, 4320, 4758, 5354
BfrI CTTAAG 2 cut(s) 2057, 2509
BfuAI ACCTGC 1 cut(s) 3916
BfuI GTATCC 3 cut(s) 558, 2279, 2422
BglII AGATCT 3 cut(s) 626, 3418, 4967
BlnI CCTAGG 2 cut(s) 3626, 4555
BmcAI AGTACT 2 cut(s) 1653, 2820
BmeRI GACNNNNNGTC 1 cut(s) 2590
BmeT110I CYCGRG 1 cut(s) 3272
BmrI ACTGGG 3 cut(s) 2841, 3780, 3820
BmtI GCTAGC 1 cut(s) 3177
BmuI ACTGGG 3 cut(s) 2841, 3780, 3820
BpiI GAAGAC 4 cut(s) 343, 375, 494, 2798
BplI GAGNNNNNCTC 4 cut(s) 3203, 3235, 3509, 3541
BpmI CTGGAG 5 cut(s) 2735, 2814, 3376, 3900, 5199
Bpu10I CCTNAGC 2 cut(s) 1449, 5523
Bpu14I TTCGAA 1 cut(s) 334
BpuEI CTTGAG 6 cut(s) 113, 665, 2576, 3110, 3335, 3677
BpuMI CCSGG 2 cut(s) 402, 5023
BsaAI YACGTR 2 cut(s) 184, 4661
BsaBI GATNNNNATC 3 cut(s) 512, 2841, 3648
BsaHI GRCGYC 2 cut(s) 365, 1119
BsaI GGTCTC 3 cut(s) 2054, 4832, 5208
BsaWI WCCGGW 8 cut(s) 424, 449, 904, 2045, 3986, 4810, 5164, 5185
Bse118I RCCGGY 5 cut(s) 518, 798, 1804, 2045, 3744
Bse21I CCTNAGG 1 cut(s) 1479
Bse3DI GCAATG 4 cut(s) 549, 1050, 2489, 3072
Bse8I GATNNNNATC 3 cut(s) 512, 2841, 3648
BseBI CCWGG 9 cut(s) 2216, 3504, 4131, 4199, 4367, 4576, 4824, 5073, 5433
BseJI GATNNNNATC 3 cut(s) 512, 2841, 3648
BseMI GCAATG 4 cut(s) 549, 1050, 2489, 3072
BseRI GAGGAG 5 cut(s) 594, 674, 1079, 1970, 3903
BseYI CCCAGC 1 cut(s) 4033
BsgI GTGCAG 5 cut(s) 343, 2094, 3339, 4473, 5304
Bsh1236I CGCG 4 cut(s) 2026, 2223, 4945, 4987
Bsh1285I CGRYCG 2 cut(s) 434, 516
BshNI GGYRCC 1 cut(s) 3108
BshTI ACCGGT 1 cut(s) 2045
BsiEI CGRYCG 2 cut(s) 434, 516
BsiHKAI GWGCWC 3 cut(s) 474, 849, 5019
BsiHKCI CYCGRG 1 cut(s) 3272
BslFI GGGAC 8 cut(s) 884, 2232, 2585, 2612, 3939, 4147, 4348, 5134
BsmBI CGTCTC 5 cut(s) 984, 1126, 2598, 3033, 4733
BsmFI GGGAC 8 cut(s) 884, 2232, 2585, 2612, 3939, 4147, 4348, 5134
BsmI GAATGC 2 cut(s) 1314, 1551
Bso31I GGTCTC 3 cut(s) 2054, 4832, 5208
BsoBI CYCGRG 1 cut(s) 3272
Bsp119I TTCGAA 1 cut(s) 334
Bsp1286I GDGCHC 3 cut(s) 474, 849, 5019
Bsp1407I TGTACA 3 cut(s) 2254, 2634, 4177
Bsp19I CCATGG 1 cut(s) 1013
BspACI CCGC 9 cut(s) 408, 531, 554, 935, 2026, 3302, 4154, 4764, 4943
BspFNI CGCG 4 cut(s) 2026, 2223, 4945, 4987
BspHI TCATGA 3 cut(s) 828, 1207, 1378
BspMAI CTGCAG 4 cut(s) 3264, 3997, 4762, 5358
BspMI ACCTGC 1 cut(s) 3916
BspOI GCTAGC 1 cut(s) 3177
BspPI GGATC 3 cut(s) 158, 3291, 4266
BspQI GCTCTTC 1 cut(s) 306
BspT104I TTCGAA 1 cut(s) 334
BspT107I GGYRCC 1 cut(s) 3108
BspTI CTTAAG 2 cut(s) 2057, 2509
BspTNI GGTCTC 3 cut(s) 2054, 4832, 5208
BsrDI GCAATG 4 cut(s) 549, 1050, 2489, 3072
BsrFI RCCGGY 5 cut(s) 518, 798, 1804, 2045, 3744
BsrGI TGTACA 3 cut(s) 2254, 2634, 4177
BssAI RCCGGY 5 cut(s) 518, 798, 1804, 2045, 3744
BssNI GRCGYC 2 cut(s) 365, 1119
BssSI CACGAG 1 cut(s) 221
BssT1I CCWWGG 7 cut(s) 39, 1013, 2567, 2697, 3626, 4555, 5081
Bst2BI CACGAG 1 cut(s) 221
Bst2UI CCWGG 9 cut(s) 2216, 3504, 4131, 4199, 4367, 4576, 4824, 5073, 5433
Bst6I CTCTTC 5 cut(s) 57, 291, 306, 982, 2462
BstACI GRCGYC 2 cut(s) 365, 1119
BstAFI CTTAAG 2 cut(s) 2057, 2509
BstAPI GCANNNNNTGC 4 cut(s) 821, 1259, 1744, 3259
BstAUI TGTACA 3 cut(s) 2254, 2634, 4177
BstBAI YACGTR 2 cut(s) 184, 4661
BstBI TTCGAA 1 cut(s) 334
BstDSI CCRYGG 2 cut(s) 321, 1013
BstENI CCTNNNNNAGG 2 cut(s) 1509, 1642
BstFNI CGCG 4 cut(s) 2026, 2223, 4945, 4987
BstHHI GCGC 1 cut(s) 2998
BstMCI CGRYCG 2 cut(s) 434, 516
BstNI CCWGG 9 cut(s) 2216, 3504, 4131, 4199, 4367, 4576, 4824, 5073, 5433
BstNSI RCATGY 8 cut(s) 195, 1731, 2367, 2645, 2652, 3021, 4385, 5057
BstSFI CTRYAG 7 cut(s) 711, 2814, 3260, 3993, 4320, 4758, 5354
BstUI CGCG 4 cut(s) 2026, 2223, 4945, 4987
BstV2I GAAGAC 4 cut(s) 343, 375, 494, 2798
BstX2I RGATCY 5 cut(s) 150, 626, 3283, 3418, 4967
BstXI CCANNNNNNTGG 2 cut(s) 2549, 3337
BstYI RGATCY 5 cut(s) 150, 626, 3283, 3418, 4967
Bsu36I CCTNAGG 1 cut(s) 1479
BsuI GTATCC 3 cut(s) 558, 2279, 2422
BtgI CCRYGG 2 cut(s) 321, 1013
BtsI GCAGTG 2 cut(s) 4155, 4437
BtsIMutI CAGTG 9 cut(s) 2829, 3924, 4081, 4155, 4228, 4437, 4698, 5109, 5151
BveI ACCTGC 1 cut(s) 3916
CaiI CAGNNNCTG 5 cut(s) 3446, 3527, 4040, 4532, 5432
CciI TCATGA 3 cut(s) 828, 1207, 1378
CfoI GCGC 1 cut(s) 2998
Cfr10I RCCGGY 5 cut(s) 518, 798, 1804, 2045, 3744
CseI GACGC 1 cut(s) 2229
CsiI ACCWGGT 1 cut(s) 3502
CspAI ACCGGT 1 cut(s) 2045
CspCI CAANNNNNGTGG 2 cut(s) 2106, 2141
DraIII CACNNNGTG 2 cut(s) 226, 1397
DriI GACNNNNNGTC 1 cut(s) 2590
EaeI YGGCCR 3 cut(s) 565, 800, 5074
Eam1104I CTCTTC 5 cut(s) 57, 291, 306, 982, 2462
Eam1105I GACNNNNNGTC 1 cut(s) 2590
EarI CTCTTC 5 cut(s) 57, 291, 306, 982, 2462
EciI GGCGGA 3 cut(s) 397, 543, 4169
Eco130I CCWWGG 7 cut(s) 39, 1013, 2567, 2697, 3626, 4555, 5081
Eco147I AGGCCT 1 cut(s) 1091
Eco31I GGTCTC 3 cut(s) 2054, 4832, 5208
Eco32I GATATC 3 cut(s) 1867, 3839, 5162
Eco57I CTGAAG 8 cut(s) 1527, 1556, 3627, 3934, 4361, 4437, 5298, 5421
Eco72I CACGTG 1 cut(s) 4661
Eco81I CCTNAGG 1 cut(s) 1479
Eco88I CYCGRG 1 cut(s) 3272
EcoNI CCTNNNNNAGG 2 cut(s) 1509, 1642
EcoO109I RGGNCCY 4 cut(s) 233, 664, 1635, 1816
EcoRI GAATTC 1 cut(s) 1933
EcoRII CCWGG 9 cut(s) 2214, 3502, 4129, 4197, 4365, 4574, 4822, 5071, 5431
EcoRV GATATC 3 cut(s) 1867, 3839, 5162
EcoT14I CCWWGG 7 cut(s) 39, 1013, 2567, 2697, 3626, 4555, 5081
EcoT22I ATGCAT 2 cut(s) 2017, 2190
ErhI CCWWGG 7 cut(s) 39, 1013, 2567, 2697, 3626, 4555, 5081
Esp3I CGTCTC 5 cut(s) 984, 1126, 2598, 3033, 4733
FalI AAGNNNNNCTT 4 cut(s) 2681, 2713, 4918, 4950
FaqI GGGAC 8 cut(s) 884, 2232, 2585, 2612, 3939, 4147, 4348, 5134
FauI CCCGC 1 cut(s) 942
FbaI TGATCA 4 cut(s) 2902, 3154, 4045, 4834
FblI GTMKAC 1 cut(s) 1116
GlaI GCGC 1 cut(s) 2997
GsaI CCCAGC 1 cut(s) 4037
GsuI CTGGAG 5 cut(s) 2735, 2814, 3376, 3900, 5199
HgaI GACGC 1 cut(s) 2229
HhaI GCGC 1 cut(s) 2998
Hin1I GRCGYC 2 cut(s) 365, 1119
Hin6I GCGC 1 cut(s) 2996
HinP1I GCGC 1 cut(s) 2996
HincII GTYRAC 3 cut(s) 346, 1117, 1534
HindII GTYRAC 3 cut(s) 346, 1117, 1534
HindIII AAGCTT 2 cut(s) 3333, 3946
HpaI GTTAAC 1 cut(s) 1534
Hpy99I CGWCG 8 cut(s) 296, 356, 367, 370, 382, 470, 709, 1121
Hsp92I GRCGYC 2 cut(s) 365, 1119
HspAI GCGC 1 cut(s) 2996
KpnI GGTACC 1 cut(s) 3112
KroI GCCGGC 2 cut(s) 518, 798
KroNI GCCGGC 2 cut(s) 520, 800
Ksp22I TGATCA 4 cut(s) 2902, 3154, 4045, 4834
KspAI GTTAAC 1 cut(s) 1534
LguI GCTCTTC 1 cut(s) 306
MabI ACCWGGT 1 cut(s) 3502
MfeI CAATTG 2 cut(s) 4137, 5340
MflI RGATCY 5 cut(s) 150, 626, 3283, 3418, 4967
MhlI GDGCHC 3 cut(s) 474, 849, 5019
MlsI TGGCCA 1 cut(s) 5076
MluI ACGCGT 1 cut(s) 2221
MluNI TGGCCA 1 cut(s) 5076
MlyI GAGTC 7 cut(s) 107, 455, 511, 545, 3335, 4370, 5240
MmeI TCCRAC 3 cut(s) 4372, 5231, 5245
Mox20I TGGCCA 1 cut(s) 5076
Mph1103I ATGCAT 2 cut(s) 2017, 2190
MreI CGCCGGCG 1 cut(s) 518
MroNI GCCGGC 2 cut(s) 518, 798
MroXI GAANNNNTTC 1 cut(s) 836
MscI TGGCCA 1 cut(s) 5076
MslI CAYNNNNRTG 3 cut(s) 3408, 4386, 5010
Msp20I TGGCCA 1 cut(s) 5076
MspA1I CMGCKG 4 cut(s) 1358, 4088, 4529, 5060
MspCI CTTAAG 2 cut(s) 2057, 2509
MunI CAATTG 2 cut(s) 4137, 5340
Mva1269I GAATGC 2 cut(s) 1314, 1551
MvaI CCWGG 9 cut(s) 2216, 3504, 4131, 4199, 4367, 4576, 4824, 5073, 5433
MvnI CGCG 4 cut(s) 2026, 2223, 4945, 4987
NaeI GCCGGC 2 cut(s) 520, 800
NciI CCSGG 2 cut(s) 402, 5023
NcoI CCATGG 1 cut(s) 1013
NgoMIV GCCGGC 2 cut(s) 518, 798
NheI GCTAGC 1 cut(s) 3173
NmeAIII GCCGAG 2 cut(s) 543, 582
NmuCI GTSAC 7 cut(s) 121, 1939, 2061, 3747, 4234, 4656, 5327
NsiI ATGCAT 2 cut(s) 2017, 2190
NspI RCATGY 8 cut(s) 195, 1731, 2367, 2645, 2652, 3021, 4385, 5057
NspV TTCGAA 1 cut(s) 334
OliI CACNNNNGTG 1 cut(s) 5010
PaeI GCATGC 1 cut(s) 4385
PagI TCATGA 3 cut(s) 828, 1207, 1378
PasI CCCWGGG 1 cut(s) 2215
PceI AGGCCT 1 cut(s) 1091
PciI ACATGT 2 cut(s) 191, 3017
PciSI GCTCTTC 1 cut(s) 306
PcsI WCGNNNNNNNCGW 4 cut(s) 374, 465, 999, 4984
PctI GAATGC 2 cut(s) 1314, 1551
PdiI GCCGGC 2 cut(s) 520, 800
PdmI GAANNNNTTC 1 cut(s) 836
PfeI GAWTC 9 cut(s) 508, 1187, 2036, 2681, 3644, 4346, 4412, 4589, 5191
PflFI GACNNNGTC 1 cut(s) 350
PflMI CCANNNNNTGG 4 cut(s) 2162, 2278, 4703, 4799
PinAI ACCGGT 1 cut(s) 2045
Ple19I CGATCG 1 cut(s) 516
PleI GAGTC 7 cut(s) 107, 454, 510, 544, 3334, 4369, 5239
PmaCI CACGTG 1 cut(s) 4661
PmlI CACGTG 1 cut(s) 4661
PpsI GAGTC 7 cut(s) 107, 454, 510, 544, 3334, 4369, 5239
Ppu21I YACGTR 2 cut(s) 184, 4661
PpuMI RGGWCCY 3 cut(s) 233, 664, 1635
PscI ACATGT 2 cut(s) 191, 3017
PshBI ATTAAT 1 cut(s) 2880
Psp1406I AACGTT 1 cut(s) 5385
Psp5II RGGWCCY 3 cut(s) 233, 664, 1635
Psp6I CCWGG 9 cut(s) 2214, 3502, 4129, 4197, 4365, 4574, 4822, 5071, 5431
PspCI CACGTG 1 cut(s) 4661
PspFI CCCAGC 1 cut(s) 4033
PspGI CCWGG 9 cut(s) 2214, 3502, 4129, 4197, 4365, 4574, 4822, 5071, 5431
PspPPI RGGWCCY 3 cut(s) 233, 664, 1635
PstI CTGCAG 4 cut(s) 3264, 3997, 4762, 5358
PstNI CAGNNNCTG 5 cut(s) 3446, 3527, 4040, 4532, 5432
PsuI RGATCY 5 cut(s) 150, 626, 3283, 3418, 4967
PsyI GACNNNGTC 1 cut(s) 350
PvuI CGATCG 1 cut(s) 516
PvuII CAGCTG 4 cut(s) 1358, 4088, 4529, 5060
RseI CAYNNNNRTG 3 cut(s) 3408, 4386, 5010
SalI GTCGAC 1 cut(s) 1115
SapI GCTCTTC 1 cut(s) 306
ScaI AGTACT 2 cut(s) 1653, 2820
SchI GAGTC 7 cut(s) 107, 455, 511, 545, 3335, 4370, 5240
SduI GDGCHC 3 cut(s) 474, 849, 5019
SexAI ACCWGGT 1 cut(s) 3502
SfcI CTRYAG 7 cut(s) 711, 2814, 3260, 3993, 4320, 4758, 5354
SfuI TTCGAA 1 cut(s) 334
SgrAI CRCCGGYG 1 cut(s) 518
SmiMI CAYNNNNRTG 3 cut(s) 3408, 4386, 5010
SmlI CTYRAG 8 cut(s) 128, 644, 2057, 2509, 2555, 3125, 3314, 3656
SmoI CTYRAG 8 cut(s) 128, 644, 2057, 2509, 2555, 3125, 3314, 3656
SphI GCATGC 1 cut(s) 4385
SseBI AGGCCT 1 cut(s) 1091
SsiI CCGC 9 cut(s) 408, 531, 554, 935, 2026, 3302, 4154, 4764, 4943
SspI AATATT 3 cut(s) 2374, 3672, 4867
StuI AGGCCT 1 cut(s) 1091
StyI CCWWGG 7 cut(s) 39, 1013, 2567, 2697, 3626, 4555, 5081
TaqII GACCGA 1 cut(s) 420
TatI WGTACW 8 cut(s) 1604, 1651, 2254, 2634, 2818, 4177, 4396, 5314
TauI GCSGC 4 cut(s) 534, 2029, 3305, 4766
TfiI GAWTC 9 cut(s) 508, 1187, 2036, 2681, 3644, 4346, 4412, 4589, 5191
TscAI CASTG 9 cut(s) 2836, 3924, 4081, 4155, 4228, 4444, 4698, 5109, 5151
TseFI GTSAC 7 cut(s) 121, 1939, 2061, 3747, 4234, 4656, 5327
Tsp45I GTSAC 7 cut(s) 121, 1939, 2061, 3747, 4234, 4656, 5327
TspGWI ACGGA 5 cut(s) 158, 323, 627, 3373, 4886
TspRI CASTG 9 cut(s) 2836, 3924, 4081, 4155, 4228, 4444, 4698, 5109, 5151
Tth111I GACNNNGTC 1 cut(s) 350
Van91I CCANNNNNTGG 4 cut(s) 2162, 2278, 4703, 4799
Vha464I CTTAAG 2 cut(s) 2057, 2509
VspI ATTAAT 1 cut(s) 2880
XagI CCTNNNNNAGG 2 cut(s) 1509, 1642
XapI RAATTY 7 cut(s) 854, 1618, 1933, 3255, 3550, 3580, 4182
XbaI TCTAGA 1 cut(s) 946
XceI RCATGY 8 cut(s) 195, 1731, 2367, 2645, 2652, 3021, 4385, 5057
XcmI CCANNNNNNNNNTGG 2 cut(s) 2695, 5493
XmaJI CCTAGG 2 cut(s) 3626, 4555
XmiI GTMKAC 1 cut(s) 1116
XmnI GAANNNNTTC 1 cut(s) 836
ZraI GACGTC 2 cut(s) 366, 1120
ZrmI AGTACT 2 cut(s) 1653, 2820
Zsp2I ATGCAT 2 cut(s) 2017, 2190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.