RLG00000008024
MYB Family

PHD - plant homeodomain finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0006336
Physical Location & Seq
Forward (+)
24506443 .. 24510078
3636 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008024

Sequence Viewer

Length: 1455 bp
ATGGAGATTGATAATCACGAGGAAAGTGATGGAAGCACACCTAGGACAAACGAAAATGATGTTTCTATTAGGCGAGTTGCACCTGATGAATCTGGTGAAGGTTTGCCTTTTGCTCCTATTAATTGGCCTAATCCTGGTGATACTTGGCGGTGGAAAGTGGGAAAGCGTGTTTCTGGATCTGGATACTTTCTCGATAGGTACCTCTATCTTCCAAAAAGTCTTTGCCATGGTGGTGGGAATCCAACGCGTAGGAAATATGGTTTTGCAAGCAAGCTTGCAGTTGAACGATACATCCAAACATCATTTCCTGGGACAAACCTCGATGCATTTTTTGAATCATTCTCCTGGAAGATCCCAGCCGAAATGTCACTGTTAGCAAATGGTGCTGTGAAGCTGAAGCATGTTCCAGTTGTTCCACCAATTCCACCTTGTGCAGAGATTGAAGAGTCTGATTCTCAGTCTGACGCCTTGTGCTGTAAAGCCAGAAATAAGTTGTGCATTAGTTTGTTGGGAGAAGCAGAAAACCCACCTTTATCATTCATGAAGTGTGATATTTGCTGCACTGAAACTAAGTTCTGTCGAGATTGCTGCTGCATTCTTTGTTCGAAGACTATAAACTTCTCCTATGGAGGCTATGATTACATCAGATGTGAAGCAATGACAGGCGAGGGTATTATATGTGGGCATGCTGCTCACATTGATTGTGCTCTCCGATGCTACATGGCTGGCACTGTAGGAGGAAGCATCAGATTGGATTCTGAGTACTATTGCCGGCGCTGTGATGCAAGGACAGATCTGGTTCCACATGTGACGAGGCTTTTACAGACATGTGAATCCCTTGATTCTCGGGACAACATTGAGAAGATTTTAAATATTGGTATCTGCATCTTGCACAGTTCCGAGAAAACCAGTGCAAAGGAGTTGCTCAAACGTATTGAAGTGGCTGTTGCAAAGCTCAAATATGGGACTTATCTTGAAGATATTTGGAAGCAGGAAGGTAATTCAGCTAATTCCACCGATGTTTGTCATCATCAAAGTACTGACATGGAAGTCACAACTTACCAAGAGCCCTCGAATGGTAAAACATGCTCAGATTTGATGTCTGCATCTTTTGATTATCGCTCTGAATCTCAAAGACTCGCAGAAGACATTGATCAGGTTCTGCATGCACTAAAGACATCACAAGAGTCTGAATTTAAGATGGTGGAGGAAAAGCTTCTTGCACAGAAGAACTATATTTGTAATCTGTATCAGCAACTTGAGAAAGAGAAGTCTGATTTGGCACGTCGCACATCAACCGACCCTGATGCTTTACTCAGTATTGTATTGAGCAGGGTGAAGCAGATTAAAAGAGAAGTCACAAATCTCAAGGAGATGGAGGAAATAGCCTCTGGATTTGGAAAGACTTCTAGAGCTACCCTGAAGAAGCACTTCAATTTGGAAATTGAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3 PHD_Oberon

Protein Analysis

485

Amino Acids

54.36

Weight (kDa)

5.71

Isoelectric Point (pI)

49.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7081 PF23299 26 - 120 8.3e-38 Domain of unknown function (DUF7081)
PHD_Oberon PF07227 161 - 295 3.4e-35 PHD - plant homeodomain finger protein
DUF7615 PF24590 373 - 477 2.1e-38 Domain of unknown function (DUF7615)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1049
Acc65I GGTACC 1 cut(s) 198
AccB1I GGYRCC 1 cut(s) 198
AccII CGCG 1 cut(s) 247
AciI CCGC 1 cut(s) 148
AclWI GGATC 2 cut(s) 184, 346
AcsI RAATTY 1 cut(s) 1193
AcuI CTGAAG 2 cut(s) 416, 1442
AcyI GRCGYC 1 cut(s) 465
AdeI CACNNNGTG 1 cut(s) 431
AfaI GTAC 3 cut(s) 200, 764, 1039
AfiI CCNNNNNNNGG 2 cut(s) 134, 1076
AflIII ACRYGT 3 cut(s) 245, 805, 827
AgsI TTSAA 6 cut(s) 284, 335, 443, 938, 977, 1435
AjiI CACGTC 1 cut(s) 1286
AjnI CCWGG 3 cut(s) 133, 307, 344
AjuI GAANNNNNNNTTGG 4 cut(s) 288, 320, 1262, 1294
AloI GAACNNNNNNTCC 2 cut(s) 276, 308
AluBI AGCT 6 cut(s) 274, 394, 955, 1007, 1216, 1415
AluI AGCT 6 cut(s) 274, 394, 955, 1007, 1216, 1415
Alw21I GWGCWC 1 cut(s) 709
AlwI GGATC 2 cut(s) 184, 346
AlwNI CAGNNNCTG 1 cut(s) 1162
Ama87I CYCGRG 1 cut(s) 846
AoxI GGCC 1 cut(s) 125
ApeKI GCWGC 4 cut(s) 558, 588, 591, 689
ApoI RAATTY 1 cut(s) 1193
AseI ATTAAT 1 cut(s) 120
Asp700I GAANNNNTTC 3 cut(s) 1215, 1405, 1430
Asp718I GGTACC 1 cut(s) 198
AspA2I CCTAGG 1 cut(s) 41
AspLEI GCGC 1 cut(s) 777
AsuHPI GGTGA 3 cut(s) 107, 149, 1348
AsuII TTCGAA 1 cut(s) 605
AvaI CYCGRG 1 cut(s) 846
AvrII CCTAGG 1 cut(s) 41
BanI GGYRCC 1 cut(s) 198
BanII GRGCYC 1 cut(s) 1071
BauI CACGAG 1 cut(s) 17
BbsI GAAGAC 2 cut(s) 614, 1152
Bbv12I GWGCWC 1 cut(s) 709
BbvI GCAGC 4 cut(s) 545, 575, 578, 676
BccI CCATC 3 cut(s) 23, 1195, 1369
BcgI CGANNNNNNTGC 4 cut(s) 570, 604, 1289, 1323
BciT130I CCWGG 3 cut(s) 135, 309, 346
BciVI GTATCC 1 cut(s) 176
BclI TGATCA 1 cut(s) 1153
BfaI CTAG 2 cut(s) 42, 1410
BfmI CTRYAG 1 cut(s) 732
BfoI RGCGCY 1 cut(s) 778
BfuI GTATCC 1 cut(s) 176
BglII AGATCT 1 cut(s) 793
BisI GCNGC 4 cut(s) 559, 589, 592, 690
BlnI CCTAGG 1 cut(s) 41
BlsI GCNGC 4 cut(s) 560, 590, 593, 691
BmcAI AGTACT 2 cut(s) 764, 1039
Bme1390I CCNGG 3 cut(s) 135, 309, 346
BmeT110I CYCGRG 1 cut(s) 846
BmgBI CACGTC 1 cut(s) 1286
BmiI GGNNCC 2 cut(s) 200, 801
BmrFI CCNGG 3 cut(s) 135, 309, 346
BmsI GCATC 7 cut(s) 313, 704, 753, 772, 894, 1115, 1297
BpiI GAAGAC 2 cut(s) 614, 1152
Bpu14I TTCGAA 1 cut(s) 605
BpuEI CTTGAG 2 cut(s) 1280, 1352
BsaHI GRCGYC 1 cut(s) 465
BsaJI CCNNGG 3 cut(s) 41, 226, 308
Bsc4I CCNNNNNNNGG 2 cut(s) 134, 1076
Bse118I RCCGGY 1 cut(s) 771
Bse1I ACTGG 2 cut(s) 407, 909
Bse3DI GCAATG 1 cut(s) 663
BseBI CCWGG 3 cut(s) 135, 309, 346
BseDI CCNNGG 3 cut(s) 41, 226, 308
BseGI GGATG 1 cut(s) 291
BseLI CCNNNNNNNGG 2 cut(s) 134, 1076
BseMI GCAATG 1 cut(s) 663
BseMII CTCAG 4 cut(s) 470, 750, 1104, 1330
BseNI ACTGG 2 cut(s) 407, 909
BseXI GCAGC 4 cut(s) 545, 575, 578, 676
BseYI CCCAGC 1 cut(s) 355
BsgI GTGCAG 2 cut(s) 453, 544
Bsh1236I CGCG 1 cut(s) 247
BshFI GGCC 1 cut(s) 127
BshNI GGYRCC 1 cut(s) 198
BsiHKAI GWGCWC 1 cut(s) 709
BsiHKCI CYCGRG 1 cut(s) 846
BsiSI CCGG 1 cut(s) 772
BslFI GGGAC 3 cut(s) 325, 863, 979
BslI CCNNNNNNNGG 2 cut(s) 134, 1076
BsmFI GGGAC 3 cut(s) 325, 863, 979
BsmI GAATGC 1 cut(s) 594
BsnI GGCC 1 cut(s) 127
BsoBI CYCGRG 1 cut(s) 846
Bsp119I TTCGAA 1 cut(s) 605
Bsp1286I GDGCHC 2 cut(s) 709, 1071
Bsp143I GATC 4 cut(s) 176, 351, 793, 1153
Bsp19I CCATGG 1 cut(s) 226
BspACI CCGC 1 cut(s) 148
BspANI GGCC 1 cut(s) 127
BspCNI CTCAG 4 cut(s) 469, 751, 1103, 1329
BspFNI CGCG 1 cut(s) 247
BspHI TCATGA 1 cut(s) 540
BspLI GGNNCC 2 cut(s) 200, 801
BspPI GGATC 2 cut(s) 184, 346
BspT104I TTCGAA 1 cut(s) 605
BspT107I GGYRCC 1 cut(s) 198
BsrDI GCAATG 1 cut(s) 663
BsrFI RCCGGY 1 cut(s) 771
BsrI ACTGG 2 cut(s) 407, 909
BssAI RCCGGY 1 cut(s) 771
BssECI CCNNGG 3 cut(s) 41, 226, 308
BssMI GATC 4 cut(s) 176, 351, 793, 1153
BssNI GRCGYC 1 cut(s) 465
BssSI CACGAG 1 cut(s) 17
BssT1I CCWWGG 2 cut(s) 41, 226
Bst2BI CACGAG 1 cut(s) 17
Bst2UI CCWGG 3 cut(s) 135, 309, 346
Bst4CI ACNGT 3 cut(s) 372, 733, 896
Bst6I CTCTTC 1 cut(s) 438
BstACI GRCGYC 1 cut(s) 465
BstAPI GCANNNNNTGC 1 cut(s) 383
BstBI TTCGAA 1 cut(s) 605
BstC8I GCNNGC 7 cut(s) 268, 272, 276, 687, 727, 773, 1167
BstDEI CTNAG 5 cut(s) 456, 570, 759, 1090, 1316
BstDSI CCRYGG 1 cut(s) 226
BstF5I GGATG 1 cut(s) 291
BstFNI CGCG 1 cut(s) 247
BstH2I RGCGCY 1 cut(s) 778
BstHHI GCGC 1 cut(s) 777
BstKTI GATC 4 cut(s) 179, 354, 796, 1156
BstMBI GATC 4 cut(s) 176, 351, 793, 1153
BstMWI GCNNNNNNNGC 1 cut(s) 383
BstNI CCWGG 3 cut(s) 135, 309, 346
BstNSI RCATGY 6 cut(s) 404, 689, 809, 831, 1089, 1169
BstSCI CCNGG 3 cut(s) 133, 307, 344
BstSFI CTRYAG 1 cut(s) 732
BstUI CGCG 1 cut(s) 247
BstV1I GCAGC 4 cut(s) 545, 575, 578, 676
BstV2I GAAGAC 2 cut(s) 614, 1152
BstX2I RGATCY 3 cut(s) 176, 351, 793
BstXI CCANNNNNNTGG 1 cut(s) 233
BstYI RGATCY 3 cut(s) 176, 351, 793
BsuI GTATCC 1 cut(s) 176
BsuRI GGCC 1 cut(s) 127
BtgI CCRYGG 1 cut(s) 226
BtrI CACGTC 1 cut(s) 1286
BtsCI GGATG 1 cut(s) 291
BtsIMutI CAGTG 4 cut(s) 368, 561, 729, 916
Cac8I GCNNGC 7 cut(s) 268, 272, 276, 687, 727, 773, 1167
CaiI CAGNNNCTG 1 cut(s) 1162
CciI TCATGA 1 cut(s) 540
CfoI GCGC 1 cut(s) 777
Cfr10I RCCGGY 1 cut(s) 771
CseI GACGC 1 cut(s) 473
Csp6I GTAC 3 cut(s) 199, 763, 1038
CviQI GTAC 3 cut(s) 199, 763, 1038
DdeI CTNAG 5 cut(s) 456, 570, 759, 1090, 1316
DpnI GATC 4 cut(s) 178, 353, 795, 1155
DpnII GATC 4 cut(s) 176, 351, 793, 1153
DraI TTTAAA 1 cut(s) 870
DraIII CACNNNGTG 1 cut(s) 431
DrdI GACNNNNNNGTC 1 cut(s) 1049
DseDI GACNNNNNNGTC 1 cut(s) 1049
Eam1104I CTCTTC 1 cut(s) 438
EarI CTCTTC 1 cut(s) 438
Eco130I CCWWGG 2 cut(s) 41, 226
Eco24I GRGCYC 1 cut(s) 1071
Eco57I CTGAAG 2 cut(s) 416, 1442
Eco88I CYCGRG 1 cut(s) 846
EcoRII CCWGG 3 cut(s) 133, 307, 344
EcoT14I CCWWGG 2 cut(s) 41, 226
EcoT22I ATGCAT 1 cut(s) 328
EcoT38I GRGCYC 1 cut(s) 1071
ErhI CCWWGG 2 cut(s) 41, 226
FalI AAGNNNNNCTT 2 cut(s) 1415, 1447
FaqI GGGAC 3 cut(s) 325, 863, 979
FbaI TGATCA 1 cut(s) 1153
Fnu4HI GCNGC 4 cut(s) 559, 589, 592, 690
FokI GGATG 1 cut(s) 278
FriOI GRGCYC 1 cut(s) 1071
Fsp4HI GCNGC 4 cut(s) 559, 589, 592, 690
FspBI CTAG 2 cut(s) 42, 1410
GlaI GCGC 1 cut(s) 776
GluI GCNGC 4 cut(s) 559, 589, 592, 690
GsaI CCCAGC 1 cut(s) 359
HaeII RGCGCY 1 cut(s) 778
HaeIII GGCC 1 cut(s) 127
HapII CCGG 1 cut(s) 772
HgaI GACGC 1 cut(s) 473
HhaI GCGC 1 cut(s) 777
Hin1I GRCGYC 1 cut(s) 465
Hin6I GCGC 1 cut(s) 775
HinP1I GCGC 1 cut(s) 775
HindIII AAGCTT 2 cut(s) 272, 1214
HpaII CCGG 1 cut(s) 772
HphI GGTGA 3 cut(s) 107, 149, 1348
Hpy99I CGWCG 1 cut(s) 1290
HpyAV CCTTC 2 cut(s) 92, 989
HpyCH4III ACNGT 3 cut(s) 372, 733, 896
HpyCH4IV ACGT 2 cut(s) 931, 1285
HpyF10VI GCNNNNNNNGC 1 cut(s) 383
HpyF3I CTNAG 5 cut(s) 456, 570, 759, 1090, 1316
HpySE526I ACGT 2 cut(s) 931, 1285
Hsp92I GRCGYC 1 cut(s) 465
HspAI GCGC 1 cut(s) 775
KpnI GGTACC 1 cut(s) 202
KroI GCCGGC 1 cut(s) 771
KroNI GCCGGC 1 cut(s) 773
Ksp22I TGATCA 1 cut(s) 1153
Kzo9I GATC 4 cut(s) 176, 351, 793, 1153
LmnI GCTCC 1 cut(s) 118
Lsp1109I GCAGC 4 cut(s) 545, 575, 578, 676
LweI GCATC 7 cut(s) 313, 704, 753, 772, 894, 1115, 1297
MaeI CTAG 2 cut(s) 42, 1410
MaeII ACGT 2 cut(s) 931, 1285
MaeIII GTNAC 4 cut(s) 366, 808, 1051, 1357
MalI GATC 4 cut(s) 178, 353, 795, 1155
MboI GATC 4 cut(s) 176, 351, 793, 1153
MboII GAAGA 9 cut(s) 200, 361, 455, 619, 874, 989, 1157, 1240, 1435
MflI RGATCY 3 cut(s) 176, 351, 793
MhlI GDGCHC 2 cut(s) 709, 1071
MluCI AATT 7 cut(s) 121, 420, 1000, 1009, 1193, 1435, 1443
MluI ACGCGT 1 cut(s) 245
MlyI GAGTC 3 cut(s) 455, 1131, 1196
MmeI TCCRAC 1 cut(s) 266
Mph1103I ATGCAT 1 cut(s) 328
MroNI GCCGGC 1 cut(s) 771
MroXI GAANNNNTTC 3 cut(s) 1215, 1405, 1430
MseI TTAA 4 cut(s) 120, 869, 1197, 1347
MslI CAYNNNNRTG 1 cut(s) 231
MspI CCGG 1 cut(s) 772
MspR9I CCNGG 3 cut(s) 135, 309, 346
Mva1269I GAATGC 1 cut(s) 594
MvaI CCWGG 3 cut(s) 135, 309, 346
MvnI CGCG 1 cut(s) 247
MwoI GCNNNNNNNGC 1 cut(s) 383
NaeI GCCGGC 1 cut(s) 773
NcoI CCATGG 1 cut(s) 226
NdeII GATC 4 cut(s) 176, 351, 793, 1153
NgoMIV GCCGGC 1 cut(s) 771
NlaIV GGNNCC 2 cut(s) 200, 801
NmuCI GTSAC 4 cut(s) 366, 808, 1051, 1357
NsiI ATGCAT 1 cut(s) 328
NspI RCATGY 6 cut(s) 404, 689, 809, 831, 1089, 1169
NspV TTCGAA 1 cut(s) 605
PaeI GCATGC 2 cut(s) 689, 1169
PagI TCATGA 1 cut(s) 540
PciI ACATGT 2 cut(s) 805, 827
PctI GAATGC 1 cut(s) 594
PdiI GCCGGC 1 cut(s) 773
PdmI GAANNNNTTC 3 cut(s) 1215, 1405, 1430
PfeI GAWTC 8 cut(s) 89, 238, 335, 452, 755, 833, 842, 1127
PfoI TCCNGGA 1 cut(s) 344
PkrI GCNGC 4 cut(s) 560, 590, 593, 691
PleI GAGTC 3 cut(s) 454, 1131, 1195
PpsI GAGTC 3 cut(s) 454, 1131, 1195
PscI ACATGT 2 cut(s) 805, 827
PshBI ATTAAT 1 cut(s) 120
Psp6I CCWGG 3 cut(s) 133, 307, 344
PspFI CCCAGC 1 cut(s) 355
PspGI CCWGG 3 cut(s) 133, 307, 344
PspN4I GGNNCC 2 cut(s) 200, 801
PstNI CAGNNNCTG 1 cut(s) 1162
PsuI RGATCY 3 cut(s) 176, 351, 793
RsaI GTAC 3 cut(s) 200, 764, 1039
RsaNI GTAC 3 cut(s) 199, 763, 1038
RseI CAYNNNNRTG 1 cut(s) 231
SaqAI TTAA 4 cut(s) 120, 869, 1197, 1347
SatI GCNGC 4 cut(s) 559, 589, 592, 690
Sau3AI GATC 4 cut(s) 176, 351, 793, 1153
ScaI AGTACT 2 cut(s) 764, 1039
SchI GAGTC 3 cut(s) 455, 1131, 1196
ScrFI CCNGG 3 cut(s) 135, 309, 346
SduI GDGCHC 2 cut(s) 709, 1071
SfaNI GCATC 7 cut(s) 313, 704, 753, 772, 894, 1115, 1297
SfcI CTRYAG 1 cut(s) 732
SfuI TTCGAA 1 cut(s) 605
SmiMI CAYNNNNRTG 1 cut(s) 231
SmlI CTYRAG 2 cut(s) 1259, 1367
SmoI CTYRAG 2 cut(s) 1259, 1367
SphI GCATGC 2 cut(s) 689, 1169
Sse9I AATT 7 cut(s) 121, 420, 1000, 1009, 1193, 1435, 1443
SsiI CCGC 1 cut(s) 148
SspI AATATT 1 cut(s) 874
SspMI CTAG 2 cut(s) 42, 1410
StyD4I CCNGG 3 cut(s) 133, 307, 344
StyI CCWWGG 2 cut(s) 41, 226
TaaI ACNGT 3 cut(s) 372, 733, 896
TaiI ACGT 2 cut(s) 934, 1288
TaqI TCGA 5 cut(s) 192, 321, 580, 605, 1073
TasI AATT 7 cut(s) 121, 420, 1000, 1009, 1193, 1435, 1443
TatI WGTACW 2 cut(s) 762, 1037
TfiI GAWTC 8 cut(s) 89, 238, 335, 452, 755, 833, 842, 1127
Tru1I TTAA 4 cut(s) 120, 869, 1197, 1347
Tru9I TTAA 4 cut(s) 120, 869, 1197, 1347
TscAI CASTG 4 cut(s) 375, 568, 736, 916
TseFI GTSAC 4 cut(s) 366, 808, 1051, 1357
TseI GCWGC 4 cut(s) 558, 588, 591, 689
Tsp45I GTSAC 4 cut(s) 366, 808, 1051, 1357
TspDTI ATGAA 3 cut(s) 102, 529, 557
TspRI CASTG 4 cut(s) 375, 568, 736, 916
VspI ATTAAT 1 cut(s) 120
XapI RAATTY 1 cut(s) 1193
XbaI TCTAGA 1 cut(s) 1409
XceI RCATGY 6 cut(s) 404, 689, 809, 831, 1089, 1169
XmaJI CCTAGG 1 cut(s) 41
XmnI GAANNNNTTC 3 cut(s) 1215, 1405, 1430
XspI CTAG 2 cut(s) 42, 1410
ZrmI AGTACT 2 cut(s) 764, 1039
Zsp2I ATGCAT 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.