Rorug04G0137300
MYB Family

PHD - plant homeodomain finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0006336
Physical Location & Seq
Forward (+)
22277609 .. 22280647
3039 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0137300.1

Sequence Viewer

Length: 1056 bp
ATGTGCAATCACGGGGCGAGGTCGGCGAAGAGTAGCAGCAGCAACAGCAGTAGTAGGCAGCAGCAGCAGGAGAAGAAGAAGACGAGGATGCTGGTTAAGTTTAAAGACCTGCCACAGTATATGAAGGACAACGAGTACATACTGGACTATTACCGCTGCGAGTGGCCGTTAAAGGATGTCATCTTCAGCGTCTTTGCCTGGCACAACGAAACCCTCAACATCTGGACGCATTTGTTGGGGTTCTTGATATTCGTGGGACTAGCGGTGATGAGCTCGAAGGATATGGGAGCTCTGCTCGGGAATTTCTCCAGGGCTTCGGTTTCTGGGCCGTCGATGATGAAGATGAACCAGCTTAATGTCTCCGACGCTCTATTTGCTCCGGATTCACATTTGAAGCAAATGTCAGAGTCATTCATTTATGCTAACAAGGATGATGGTTTTAGTACAATTCCAAGCTGGCCTTGGTTTGTGTTCTTAAGTGGTGCTATGGGCTGCTTAGTCTGCAGCTCCCTCTCCCACCTCTTTGCTTGTCACTCCAAACGCTTCAACTATTTCTTTTGGCGTCTGGACTATGCGGGCATTTCCCTTATGATAGTTTGCTCCTTCTTTGCTCCCATATACTATACCTTCCACTGCAATCCATACTCTCGCTTGTTCTATCTCTCTTCAATATCCATTCTTGGCGTCCTTGTCATCGTTACACTCCTTTCGCCGAGTCTCTCTGCACCCCGTTTCCGGACATTCAGGGCCACTCTCTTCCTCACCATGGGCTTCTCAGGTGTTATTCCTGCTGTTCATGCCCTTGTTATCCATTGGGACCATCAACCCATAATTGCTGCTCTGGGGTATGAACTTGCTATGGCTATTTTTTATGCCACGGGAGCTGGGTTCTATGTTAGTAGGATACCAGAACGCTGGAAACCCGGTAAATTTGATATTGCAGGACACAGCCATCAGATCTTCCATGTGTTTGTTGTGTTAGGTGCACTTGCACATAGTGCTGCCACACTAGCAGTCATGGATTTTCGCCGGGGATTGCCAACCTGTGTATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3 PHD_Oberon

Protein Analysis

351

Amino Acids

39.66

Weight (kDa)

9.2

Isoelectric Point (pI)

44.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HlyIII PF03006 65 - 332 2e-63 Haemolysin-III related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 117
AccIII TCCGGA 2 cut(s) 379, 735
AciI CCGC 3 cut(s) 154, 263, 575
AcoI YGGCCR 1 cut(s) 164
AcsI RAATTY 2 cut(s) 301, 929
AcuI CTGAAG 1 cut(s) 169
AcyI GRCGYC 2 cut(s) 562, 684
AdeI CACNNNGTG 1 cut(s) 998
AfaI GTAC 2 cut(s) 137, 445
AfiI CCNNNNNNNGG 2 cut(s) 735, 766
AflII CTTAAG 1 cut(s) 475
AgsI TTSAA 3 cut(s) 394, 547, 669
AjnI CCWGG 2 cut(s) 197, 308
AluBI AGCT 6 cut(s) 273, 290, 352, 456, 507, 884
AluI AGCT 6 cut(s) 273, 290, 352, 456, 507, 884
Alw21I GWGCWC 3 cut(s) 275, 292, 988
Alw26I GTCTC 2 cut(s) 364, 722
Alw44I GTGCAC 1 cut(s) 984
Ama87I CYCGRG 1 cut(s) 296
Aor13HI TCCGGA 2 cut(s) 379, 735
AoxI GGCC 4 cut(s) 164, 326, 458, 747
ApaLI GTGCAC 1 cut(s) 984
ApoI RAATTY 2 cut(s) 301, 929
ArsI GACNNNNNNTTYG 2 cut(s) 356, 388
AspS9I GGNCC 3 cut(s) 326, 747, 817
AsuC2I CCSGG 2 cut(s) 924, 1031
AsuHPI GGTGA 2 cut(s) 277, 754
AvaI CYCGRG 1 cut(s) 296
AvaII GGWCC 1 cut(s) 817
BaeGI GKGCMC 1 cut(s) 988
BanII GRGCYC 2 cut(s) 275, 292
BbsI GAAGAC 1 cut(s) 86
Bbv12I GWGCWC 3 cut(s) 275, 292, 988
BccI CCATC 3 cut(s) 428, 828, 960
BceAI ACGGC 2 cut(s) 151, 313
BciT130I CCWGG 2 cut(s) 199, 310
BciVI GTATCC 1 cut(s) 897
BcnI CCSGG 2 cut(s) 924, 1031
BcoDI GTCTC 2 cut(s) 364, 722
BfaI CTAG 2 cut(s) 260, 1010
BfmI CTRYAG 1 cut(s) 502
BfrI CTTAAG 1 cut(s) 475
BfuAI ACCTGC 1 cut(s) 117
BfuI GTATCC 1 cut(s) 897
BglII AGATCT 1 cut(s) 957
Bme1390I CCNGG 4 cut(s) 199, 310, 924, 1031
Bme18I GGWCC 1 cut(s) 817
BmeT110I CYCGRG 1 cut(s) 296
BmgT120I GGNCC 3 cut(s) 326, 747, 817
BmiI GGNNCC 1 cut(s) 818
BmrFI CCNGG 4 cut(s) 199, 310, 924, 1031
BmsI GCATC 1 cut(s) 78
BpiI GAAGAC 1 cut(s) 86
BplI GAGNNNNNCTC 2 cut(s) 279, 311
BpmI CTGGAG 1 cut(s) 292
BpuMI CCSGG 2 cut(s) 924, 1031
BsaHI GRCGYC 2 cut(s) 562, 684
BsaJI CCNNGG 5 cut(s) 309, 461, 765, 876, 1030
BsaWI WCCGGW 2 cut(s) 379, 735
Bsc4I CCNNNNNNNGG 2 cut(s) 735, 766
Bse1I ACTGG 1 cut(s) 147
BseAI TCCGGA 2 cut(s) 379, 735
BseBI CCWGG 2 cut(s) 199, 310
BseDI CCNNGG 5 cut(s) 309, 461, 765, 876, 1030
BseGI GGATG 3 cut(s) 93, 181, 436
BseLI CCNNNNNNNGG 2 cut(s) 735, 766
BseMII CTCAG 1 cut(s) 789
BseNI ACTGG 1 cut(s) 147
BseSI GKGCMC 1 cut(s) 988
BseYI CCCAGC 1 cut(s) 884
BsgI GTGCAG 1 cut(s) 708
BshFI GGCC 4 cut(s) 166, 328, 460, 749
BsiHKAI GWGCWC 3 cut(s) 275, 292, 988
BsiHKCI CYCGRG 1 cut(s) 296
BsiSI CCGG 4 cut(s) 380, 736, 924, 1030
BslFI GGGAC 2 cut(s) 270, 830
BslI CCNNNNNNNGG 2 cut(s) 735, 766
BsmAI GTCTC 2 cut(s) 364, 722
BsmFI GGGAC 2 cut(s) 270, 830
BsnI GGCC 4 cut(s) 166, 328, 460, 749
BsoBI CYCGRG 1 cut(s) 296
Bsp1286I GDGCHC 3 cut(s) 275, 292, 988
Bsp13I TCCGGA 2 cut(s) 379, 735
Bsp143I GATC 1 cut(s) 957
Bsp19I CCATGG 1 cut(s) 765
BspACI CCGC 3 cut(s) 154, 263, 575
BspANI GGCC 4 cut(s) 166, 328, 460, 749
BspCNI CTCAG 1 cut(s) 788
BspEI TCCGGA 2 cut(s) 379, 735
BspLI GGNNCC 1 cut(s) 818
BspMAI CTGCAG 1 cut(s) 506
BspMI ACCTGC 1 cut(s) 117
BspTI CTTAAG 1 cut(s) 475
BsrI ACTGG 1 cut(s) 147
BssECI CCNNGG 5 cut(s) 309, 461, 765, 876, 1030
BssMI GATC 1 cut(s) 957
BssNI GRCGYC 2 cut(s) 562, 684
BssT1I CCWWGG 2 cut(s) 461, 765
Bst2UI CCWGG 2 cut(s) 199, 310
Bst4CI ACNGT 1 cut(s) 117
Bst6I CTCTTC 3 cut(s) 23, 670, 761
BstACI GRCGYC 2 cut(s) 562, 684
BstAFI CTTAAG 1 cut(s) 475
BstAPI GCANNNNNTGC 1 cut(s) 998
BstC8I GCNNGC 2 cut(s) 458, 577
BstDEI CTNAG 2 cut(s) 496, 775
BstDSI CCRYGG 2 cut(s) 765, 876
BstF5I GGATG 3 cut(s) 93, 181, 436
BstKTI GATC 1 cut(s) 960
BstMAI GTCTC 2 cut(s) 364, 722
BstMBI GATC 1 cut(s) 957
BstMWI GCNNNNNNNGC 9 cut(s) 23, 45, 64, 374, 501, 797, 881, 998, 1010
BstNI CCWGG 2 cut(s) 199, 310
BstSCI CCNGG 4 cut(s) 197, 308, 922, 1029
BstSFI CTRYAG 1 cut(s) 502
BstSLI GKGCMC 1 cut(s) 988
BstV2I GAAGAC 1 cut(s) 86
BstX2I RGATCY 1 cut(s) 957
BstXI CCANNNNNNTGG 1 cut(s) 915
BstYI RGATCY 1 cut(s) 957
BsuI GTATCC 1 cut(s) 897
BsuRI GGCC 4 cut(s) 166, 328, 460, 749
BtgI CCRYGG 2 cut(s) 765, 876
BtsCI GGATG 3 cut(s) 93, 181, 436
BtsI GCAGTG 1 cut(s) 631
BtsIMutI CAGTG 1 cut(s) 631
BveI ACCTGC 1 cut(s) 117
Cac8I GCNNGC 2 cut(s) 458, 577
Cfr13I GGNCC 3 cut(s) 326, 747, 817
CseI GACGC 5 cut(s) 178, 235, 374, 551, 673
Csp6I GTAC 2 cut(s) 136, 444
CviAII CATG 4 cut(s) 766, 797, 965, 1018
CviQI GTAC 2 cut(s) 136, 444
DdeI CTNAG 2 cut(s) 496, 775
DpnI GATC 1 cut(s) 959
DpnII GATC 1 cut(s) 957
DraI TTTAAA 1 cut(s) 103
DraIII CACNNNGTG 1 cut(s) 998
EaeI YGGCCR 1 cut(s) 164
Eam1104I CTCTTC 3 cut(s) 23, 670, 761
EarI CTCTTC 3 cut(s) 23, 670, 761
Ecl136II GAGCTC 2 cut(s) 273, 290
Eco130I CCWWGG 2 cut(s) 461, 765
Eco24I GRGCYC 2 cut(s) 275, 292
Eco47I GGWCC 1 cut(s) 817
Eco53kI GAGCTC 2 cut(s) 273, 290
Eco57I CTGAAG 1 cut(s) 169
Eco88I CYCGRG 1 cut(s) 296
EcoICRI GAGCTC 2 cut(s) 273, 290
EcoRII CCWGG 2 cut(s) 197, 308
EcoT14I CCWWGG 2 cut(s) 461, 765
EcoT38I GRGCYC 2 cut(s) 275, 292
ErhI CCWWGG 2 cut(s) 461, 765
FaeI CATG 4 cut(s) 769, 800, 968, 1021
FalI AAGNNNNNCTT 2 cut(s) 445, 477
FaqI GGGAC 2 cut(s) 270, 830
FatI CATG 4 cut(s) 765, 796, 964, 1017
FauI CCCGC 1 cut(s) 568
FokI GGATG 3 cut(s) 100, 188, 443
FriOI GRGCYC 2 cut(s) 275, 292
FspBI CTAG 2 cut(s) 260, 1010
GsaI CCCAGC 1 cut(s) 888
GsuI CTGGAG 1 cut(s) 292
HaeIII GGCC 4 cut(s) 166, 328, 460, 749
HapII CCGG 4 cut(s) 380, 736, 924, 1030
HgaI GACGC 5 cut(s) 178, 235, 374, 551, 673
Hin1I GRCGYC 2 cut(s) 562, 684
Hin1II CATG 4 cut(s) 769, 800, 968, 1021
HinfI GANTC 3 cut(s) 383, 407, 715
HpaII CCGG 4 cut(s) 380, 736, 924, 1030
HphI GGTGA 2 cut(s) 277, 754
Hpy166II GTNNAC 1 cut(s) 986
Hpy188I TCNGA 3 cut(s) 364, 406, 957
Hpy188III TCNNGA 6 cut(s) 223, 244, 298, 380, 566, 736
Hpy8I GTNNAC 1 cut(s) 986
Hpy99I CGWCG 2 cut(s) 334, 368
HpyAV CCTTC 4 cut(s) 118, 271, 613, 637
HpyCH4III ACNGT 1 cut(s) 117
HpyCH4V TGCA 7 cut(s) 6, 504, 636, 725, 941, 986, 992
HpyF10VI GCNNNNNNNGC 9 cut(s) 23, 45, 64, 374, 501, 797, 881, 998, 1010
HpyF3I CTNAG 2 cut(s) 496, 775
Hsp92I GRCGYC 2 cut(s) 562, 684
Hsp92II CATG 4 cut(s) 769, 800, 968, 1021
Kpn2I TCCGGA 2 cut(s) 379, 735
Kzo9I GATC 1 cut(s) 957
LmnI GCTCC 6 cut(s) 287, 382, 512, 605, 616, 881
LweI GCATC 1 cut(s) 78
MaeI CTAG 2 cut(s) 260, 1010
MaeIII GTNAC 2 cut(s) 530, 697
MalI GATC 1 cut(s) 959
MboI GATC 1 cut(s) 957
MboII GAAGA 9 cut(s) 40, 85, 88, 91, 175, 352, 657, 748, 952
MflI RGATCY 1 cut(s) 957
MhlI GDGCHC 3 cut(s) 275, 292, 988
MluCI AATT 4 cut(s) 301, 447, 831, 929
MlyI GAGTC 2 cut(s) 416, 724
MmeI TCCRAC 1 cut(s) 387
MnlI CCTC 6 cut(s) 12, 78, 224, 521, 530, 770
MroI TCCGGA 2 cut(s) 379, 735
MseI TTAA 5 cut(s) 96, 102, 170, 354, 476
MspA1I CMGCKG 1 cut(s) 156
MspCI CTTAAG 1 cut(s) 475
MspI CCGG 4 cut(s) 380, 736, 924, 1030
MspR9I CCNGG 4 cut(s) 199, 310, 924, 1031
MvaI CCWGG 2 cut(s) 199, 310
MwoI GCNNNNNNNGC 9 cut(s) 23, 45, 64, 374, 501, 797, 881, 998, 1010
NciI CCSGG 2 cut(s) 924, 1031
NcoI CCATGG 1 cut(s) 765
NdeII GATC 1 cut(s) 957
NlaIII CATG 4 cut(s) 769, 800, 968, 1021
NlaIV GGNNCC 1 cut(s) 818
NmeAIII GCCGAG 1 cut(s) 738
NmuCI GTSAC 1 cut(s) 530
PfeI GAWTC 1 cut(s) 383
PleI GAGTC 2 cut(s) 415, 723
PpsI GAGTC 2 cut(s) 415, 723
Psp124BI GAGCTC 2 cut(s) 275, 292
Psp6I CCWGG 2 cut(s) 197, 308
PspFI CCCAGC 1 cut(s) 884
PspGI CCWGG 2 cut(s) 197, 308
PspN4I GGNNCC 1 cut(s) 818
PspPI GGNCC 3 cut(s) 326, 747, 817
PstI CTGCAG 1 cut(s) 506
PsuI RGATCY 1 cut(s) 957
RsaI GTAC 2 cut(s) 137, 445
RsaNI GTAC 2 cut(s) 136, 444
SacI GAGCTC 2 cut(s) 275, 292
SaqAI TTAA 5 cut(s) 96, 102, 170, 354, 476
Sau3AI GATC 1 cut(s) 957
Sau96I GGNCC 3 cut(s) 326, 747, 817
SchI GAGTC 2 cut(s) 416, 724
ScrFI CCNGG 4 cut(s) 199, 310, 924, 1031
SduI GDGCHC 3 cut(s) 275, 292, 988
SfaNI GCATC 1 cut(s) 78
SfcI CTRYAG 1 cut(s) 502
SinI GGWCC 1 cut(s) 817
SmlI CTYRAG 1 cut(s) 475
SmoI CTYRAG 1 cut(s) 475
Sse9I AATT 4 cut(s) 301, 447, 831, 929
SsiI CCGC 3 cut(s) 154, 263, 575
SspMI CTAG 2 cut(s) 260, 1010
SstI GAGCTC 2 cut(s) 275, 292
StyD4I CCNGG 4 cut(s) 197, 308, 922, 1029
StyI CCWWGG 2 cut(s) 461, 765
TaaI ACNGT 1 cut(s) 117
TaqI TCGA 2 cut(s) 275, 332
TasI AATT 4 cut(s) 301, 447, 831, 929
TatI WGTACW 2 cut(s) 135, 443
TfiI GAWTC 1 cut(s) 383
Tru1I TTAA 5 cut(s) 96, 102, 170, 354, 476
Tru9I TTAA 5 cut(s) 96, 102, 170, 354, 476
TscAI CASTG 1 cut(s) 638
TseFI GTSAC 1 cut(s) 530
Tsp45I GTSAC 1 cut(s) 530
TspDTI ATGAA 6 cut(s) 137, 353, 359, 403, 785, 864
TspRI CASTG 1 cut(s) 638
Vha464I CTTAAG 1 cut(s) 475
VneI GTGCAC 1 cut(s) 984
VpaK11BI GGWCC 1 cut(s) 817
XapI RAATTY 2 cut(s) 301, 929
XcmI CCANNNNNNNNNTGG 1 cut(s) 459
XspI CTAG 2 cut(s) 260, 1010
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.