Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0006336

Physical Location & Seq

Genomic Coordinates Reverse (-)

44019387 .. 44025706

Gene Structure 6320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG210900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGAGATTGATAATCACGAGGAAAGCGATGGAAGCACACCTAGGACAAATGAAAATGATGTTTCTATCAGGCGAGTTGCACCTGATGAATCTGGTGAAGGTTTGCCTTTTGCTCCTATTAATTGGCCTAATCCTGGTGATACTTGGCGATGGAAAGTGGGAAAGCGAGTTTCTGGATCTGGATACTTTCTTGATAGGTACCTCTATCTTCCAAAAAGTCTTTGCCATGGTGGTGGGAATCCAACGCGTAGGAAATATGGTTTTGCAAGCAAGCTTGCAGTTGAACGATACATCCAAACATCATTTCCTGGTACAAACCTCGATGCATTTTTTGAATCATTCTCCTGGAAGATCCCAGCCGAAATGTCACTGTTAGCAAATGGTGCTGTAAAGCTGAAGCATGTTCCAGTTGGTCCACCAATTCCACCTTGTGCAGAGATTGAAGAGTCTGATTCTCAGTCTGACGCCTTGTGCTGTAAAGCCAGAAATAAGTTGTGCATTAGTTTGTTGGGAGAAGCAGAAAACCCACCTTTAGCATTCATGAAGTGTGATATTTGCTGCACTGAAGCTAAGTTCTGTCGAGATTGCTGCTGCATTCTTTGTTCGAAGACTATAAACTTCTCCTATGGAGGCTATGATTACATCAGATGTGAAGCAATGACAGGCGAGGGTACTATATGTGGGCATGCTGCCCACATTGATTGTGCTCTCCGATGCTACATGGCTGGCACTGTAGGAGGAAGCATCGGATTGGATTCTGAGTACTATTGCCGGCGCTGTGATGCAAGGACAGATCTGGTTCCACATGTGTCAAGGCTTTTACAGACATGTGAATCCCTTGATTCTCGGGACAACATTGAGAAGATTTTAAATATTGGTATCTGCATCTTGCGCAGTTCCGAGAAAACCAGTGCAAAGGAGTTGCTCAAACGTATTGAAGTGGCTGTTGCAAAGCTCAAATATGGGACTTATCTTGAAGATATTTGGAAGCAGGAAGGTAATTCAGCTAATTCCACCGGTAAACTCTCCCCCCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_3 PHD_Oberon

Protein Analysis

345

Amino Acids

38.15

Weight (kDa)

6.34

Isoelectric Point (pI)

49.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7081	PF23299	26 - 120	4.6e-38	Domain of unknown function (DUF7081)
PHD_Oberon	PF07227	161 - 295	5.5e-36	PHD - plant homeodomain finger protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006336)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05410 AT1G05410
fragaria_vesca	FvH4_4g16310 FvH4_4g16310 FvH4_4g16310 FvH4_4g16310 FvH4_4g16310 FvH4_4g16310 FvH4_4g16310 FvH4_4g16310
malus_domestica	MD13G1194400.v1.1
prunus_persica	Prupe.1G015300_v2.0.a1 Prupe.1G015300_v2.0.a1 Prupe.1G015300_v2.0.a1 Prupe.1G015300_v2.0.a1
pyrus_communis	pycom13g16680
rosa_chinensis	RchiOBHm_Chr4g0416001
rosa_laevigata	RLG00000008024
rosa_multiflora	Rmu_sc0005415.1_g000007
rosa_roxburghii	Rroxscaffold_5G00359850
rosa_rugosa	Rorug04G0137300 Rorug04G0137400
rosa_samantha	Rh4AG199800 Rh4BG197300 Rh4CG210900 Rh4DG197500
rosa_wichuraiana	Rw4G016940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	893
Acc65I	GGTACC	1 cut(s)	198
AccB1I	GGYRCC	1 cut(s)	198
AccII	CGCG	1 cut(s)	247
AclWI	GGATC	2 cut(s)	184, 346
AcuI	CTGAAG	2 cut(s)	416, 585
AcyI	GRCGYC	1 cut(s)	465
AdeI	CACNNNGTG	1 cut(s)	431
AfaI	GTAC	4 cut(s)	200, 313, 673, 764
AfiI	CCNNNNNNNGG	1 cut(s)	134
AflIII	ACRYGT	3 cut(s)	245, 805, 827
AgeI	ACCGGT	1 cut(s)	1016
AgsI	TTSAA	5 cut(s)	284, 335, 443, 938, 977
AjnI	CCWGG	3 cut(s)	133, 307, 344
AjuI	GAANNNNNNNTTGG	2 cut(s)	288, 320
AloI	GAACNNNNNNTCC	2 cut(s)	276, 308
AluBI	AGCT	5 cut(s)	274, 394, 569, 955, 1007
AluI	AGCT	5 cut(s)	274, 394, 569, 955, 1007
Alw21I	GWGCWC	1 cut(s)	709
AlwI	GGATC	2 cut(s)	184, 346
Ama87I	CYCGRG	1 cut(s)	846
AoxI	GGCC	1 cut(s)	125
ApeKI	GCWGC	4 cut(s)	558, 588, 591, 689
AseI	ATTAAT	1 cut(s)	120
AsiGI	ACCGGT	1 cut(s)	1016
Asp718I	GGTACC	1 cut(s)	198
AspA2I	CCTAGG	1 cut(s)	41
AspLEI	GCGC	2 cut(s)	777, 894
AspS9I	GGNCC	1 cut(s)	413
AsuHPI	GGTGA	2 cut(s)	107, 149
AsuII	TTCGAA	1 cut(s)	605
AvaI	CYCGRG	1 cut(s)	846
AvaII	GGWCC	1 cut(s)	413
AvrII	CCTAGG	1 cut(s)	41
BanI	GGYRCC	1 cut(s)	198
BauI	CACGAG	1 cut(s)	17
BbsI	GAAGAC	1 cut(s)	614
Bbv12I	GWGCWC	1 cut(s)	709
BbvI	GCAGC	4 cut(s)	545, 575, 578, 676
BccI	CCATC	2 cut(s)	23, 144
BcgI	CGANNNNNNTGC	2 cut(s)	570, 604
BciT130I	CCWGG	3 cut(s)	135, 309, 346
BciVI	GTATCC	1 cut(s)	176
BfaI	CTAG	1 cut(s)	42
BfmI	CTRYAG	1 cut(s)	732
BfoI	RGCGCY	1 cut(s)	778
BfuI	GTATCC	1 cut(s)	176
BglII	AGATCT	1 cut(s)	793
BisI	GCNGC	4 cut(s)	559, 589, 592, 690
BlnI	CCTAGG	1 cut(s)	41
BlsI	GCNGC	4 cut(s)	560, 590, 593, 691
BmcAI	AGTACT	1 cut(s)	764
Bme1390I	CCNGG	3 cut(s)	135, 309, 346
Bme18I	GGWCC	1 cut(s)	413
BmeT110I	CYCGRG	1 cut(s)	846
BmgT120I	GGNCC	1 cut(s)	413
BmiI	GGNNCC	2 cut(s)	200, 801
BmrFI	CCNGG	3 cut(s)	135, 309, 346
BmsI	GCATC	5 cut(s)	313, 704, 753, 772, 894
BpiI	GAAGAC	1 cut(s)	614
Bpu14I	TTCGAA	1 cut(s)	605
BsaHI	GRCGYC	1 cut(s)	465
BsaJI	CCNNGG	2 cut(s)	41, 226
BsaWI	WCCGGW	1 cut(s)	1016
Bsc4I	CCNNNNNNNGG	1 cut(s)	134
Bse118I	RCCGGY	2 cut(s)	771, 1016
Bse1I	ACTGG	2 cut(s)	407, 909
Bse3DI	GCAATG	1 cut(s)	663
BseBI	CCWGG	3 cut(s)	135, 309, 346
BseDI	CCNNGG	2 cut(s)	41, 226
BseGI	GGATG	1 cut(s)	291
BseLI	CCNNNNNNNGG	1 cut(s)	134
BseMI	GCAATG	1 cut(s)	663
BseMII	CTCAG	2 cut(s)	470, 750
BseNI	ACTGG	2 cut(s)	407, 909
BseXI	GCAGC	4 cut(s)	545, 575, 578, 676
BseYI	CCCAGC	1 cut(s)	355
BsgI	GTGCAG	2 cut(s)	453, 544
Bsh1236I	CGCG	1 cut(s)	247
BshFI	GGCC	1 cut(s)	127
BshNI	GGYRCC	1 cut(s)	198
BshTI	ACCGGT	1 cut(s)	1016
BsiHKAI	GWGCWC	1 cut(s)	709
BsiHKCI	CYCGRG	1 cut(s)	846
BsiSI	CCGG	2 cut(s)	772, 1017
BslFI	GGGAC	2 cut(s)	863, 979
BslI	CCNNNNNNNGG	1 cut(s)	134
BsmFI	GGGAC	2 cut(s)	863, 979
BsmI	GAATGC	2 cut(s)	536, 594
BsnI	GGCC	1 cut(s)	127
BsoBI	CYCGRG	1 cut(s)	846
Bsp119I	TTCGAA	1 cut(s)	605
Bsp1286I	GDGCHC	1 cut(s)	709
Bsp143I	GATC	3 cut(s)	176, 351, 793
Bsp19I	CCATGG	1 cut(s)	226
BspANI	GGCC	1 cut(s)	127
BspCNI	CTCAG	2 cut(s)	469, 751
BspFNI	CGCG	1 cut(s)	247
BspHI	TCATGA	1 cut(s)	540
BspLI	GGNNCC	2 cut(s)	200, 801
BspPI	GGATC	2 cut(s)	184, 346
BspT104I	TTCGAA	1 cut(s)	605
BspT107I	GGYRCC	1 cut(s)	198
BsrDI	GCAATG	1 cut(s)	663
BsrFI	RCCGGY	2 cut(s)	771, 1016
BsrI	ACTGG	2 cut(s)	407, 909
BssAI	RCCGGY	2 cut(s)	771, 1016
BssECI	CCNNGG	2 cut(s)	41, 226
BssMI	GATC	3 cut(s)	176, 351, 793
BssNI	GRCGYC	1 cut(s)	465
BssSI	CACGAG	1 cut(s)	17
BssT1I	CCWWGG	2 cut(s)	41, 226
Bst2BI	CACGAG	1 cut(s)	17
Bst2UI	CCWGG	3 cut(s)	135, 309, 346
Bst4CI	ACNGT	2 cut(s)	372, 733
Bst6I	CTCTTC	1 cut(s)	438
BstACI	GRCGYC	1 cut(s)	465
BstAPI	GCANNNNNTGC	1 cut(s)	383
BstBI	TTCGAA	1 cut(s)	605
BstC8I	GCNNGC	6 cut(s)	268, 272, 276, 687, 727, 773
BstDEI	CTNAG	3 cut(s)	456, 570, 759
BstDSI	CCRYGG	1 cut(s)	226
BstF5I	GGATG	1 cut(s)	291
BstFNI	CGCG	1 cut(s)	247
BstH2I	RGCGCY	1 cut(s)	778
BstHHI	GCGC	2 cut(s)	777, 894
BstKTI	GATC	3 cut(s)	179, 354, 796
BstMBI	GATC	3 cut(s)	176, 351, 793
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 383, 891
BstNI	CCWGG	3 cut(s)	135, 309, 346
BstNSI	RCATGY	4 cut(s)	404, 689, 809, 831
BstSCI	CCNGG	3 cut(s)	133, 307, 344
BstSFI	CTRYAG	1 cut(s)	732
BstUI	CGCG	1 cut(s)	247
BstV1I	GCAGC	4 cut(s)	545, 575, 578, 676
BstV2I	GAAGAC	1 cut(s)	614
BstX2I	RGATCY	3 cut(s)	176, 351, 793
BstXI	CCANNNNNNTGG	1 cut(s)	233
BstYI	RGATCY	3 cut(s)	176, 351, 793
BsuI	GTATCC	1 cut(s)	176
BsuRI	GGCC	1 cut(s)	127
BtgI	CCRYGG	1 cut(s)	226
BtgZI	GCGATG	2 cut(s)	42, 163
BtsCI	GGATG	1 cut(s)	291
BtsIMutI	CAGTG	4 cut(s)	368, 561, 729, 916
Cac8I	GCNNGC	6 cut(s)	268, 272, 276, 687, 727, 773
CciI	TCATGA	1 cut(s)	540
CfoI	GCGC	2 cut(s)	777, 894
Cfr10I	RCCGGY	2 cut(s)	771, 1016
Cfr13I	GGNCC	1 cut(s)	413
CseI	GACGC	1 cut(s)	473
Csp6I	GTAC	4 cut(s)	199, 312, 672, 763
CspAI	ACCGGT	1 cut(s)	1016
CspCI	CAANNNNNGTGG	2 cut(s)	683, 718
CviAII	CATG	7 cut(s)	227, 401, 541, 686, 721, 806, 828
CviQI	GTAC	4 cut(s)	199, 312, 672, 763
DdeI	CTNAG	3 cut(s)	456, 570, 759
DpnI	GATC	3 cut(s)	178, 353, 795
DpnII	GATC	3 cut(s)	176, 351, 793
DraI	TTTAAA	1 cut(s)	870
DraIII	CACNNNGTG	1 cut(s)	431
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
Eco130I	CCWWGG	2 cut(s)	41, 226
Eco47I	GGWCC	1 cut(s)	413
Eco57I	CTGAAG	2 cut(s)	416, 585
Eco88I	CYCGRG	1 cut(s)	846
EcoRII	CCWGG	3 cut(s)	133, 307, 344
EcoT14I	CCWWGG	2 cut(s)	41, 226
EcoT22I	ATGCAT	1 cut(s)	328
ErhI	CCWWGG	2 cut(s)	41, 226
FaeI	CATG	7 cut(s)	230, 404, 544, 689, 724, 809, 831
FaqI	GGGAC	2 cut(s)	863, 979
FatI	CATG	7 cut(s)	226, 400, 540, 685, 720, 805, 827
Fnu4HI	GCNGC	4 cut(s)	559, 589, 592, 690
FokI	GGATG	1 cut(s)	278
Fsp4HI	GCNGC	4 cut(s)	559, 589, 592, 690
FspBI	CTAG	1 cut(s)	42
FspI	TGCGCA	1 cut(s)	893
GlaI	GCGC	2 cut(s)	776, 893
GluI	GCNGC	4 cut(s)	559, 589, 592, 690
GsaI	CCCAGC	1 cut(s)	359
HaeII	RGCGCY	1 cut(s)	778
HaeIII	GGCC	1 cut(s)	127
HapII	CCGG	2 cut(s)	772, 1017
HgaI	GACGC	1 cut(s)	473
HhaI	GCGC	2 cut(s)	777, 894
Hin1I	GRCGYC	1 cut(s)	465
Hin1II	CATG	7 cut(s)	230, 404, 544, 689, 724, 809, 831
Hin6I	GCGC	2 cut(s)	775, 892
HinP1I	GCGC	2 cut(s)	775, 892
HindIII	AAGCTT	1 cut(s)	272
HinfI	GANTC	8 cut(s)	89, 238, 335, 446, 452, 755, 833, 842
HpaII	CCGG	2 cut(s)	772, 1017
HphI	GGTGA	2 cut(s)	107, 149
Hpy166II	GTNNAC	2 cut(s)	416, 1022
Hpy188I	TCNGA	7 cut(s)	451, 463, 647, 713, 749, 760, 901
Hpy188III	TCNNGA	8 cut(s)	17, 174, 180, 191, 541, 581, 848, 974
Hpy8I	GTNNAC	2 cut(s)	416, 1022
HpyAV	CCTTC	2 cut(s)	92, 989
HpyCH4III	ACNGT	2 cut(s)	372, 733
HpyCH4IV	ACGT	1 cut(s)	931
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 383, 891
HpyF3I	CTNAG	3 cut(s)	456, 570, 759
HpySE526I	ACGT	1 cut(s)	931
Hsp92I	GRCGYC	1 cut(s)	465
Hsp92II	CATG	7 cut(s)	230, 404, 544, 689, 724, 809, 831
HspAI	GCGC	2 cut(s)	775, 892
KpnI	GGTACC	1 cut(s)	202
KroI	GCCGGC	1 cut(s)	771
KroNI	GCCGGC	1 cut(s)	773
Kzo9I	GATC	3 cut(s)	176, 351, 793
LmnI	GCTCC	1 cut(s)	118
Lsp1109I	GCAGC	4 cut(s)	545, 575, 578, 676
LweI	GCATC	5 cut(s)	313, 704, 753, 772, 894
MaeI	CTAG	1 cut(s)	42
MaeII	ACGT	1 cut(s)	931
MaeIII	GTNAC	1 cut(s)	366
MalI	GATC	3 cut(s)	178, 353, 795
MboI	GATC	3 cut(s)	176, 351, 793
MboII	GAAGA	6 cut(s)	200, 361, 455, 619, 874, 989
MflI	RGATCY	3 cut(s)	176, 351, 793
MhlI	GDGCHC	1 cut(s)	709
MluCI	AATT	4 cut(s)	121, 420, 1000, 1009
MluI	ACGCGT	1 cut(s)	245
MlyI	GAGTC	1 cut(s)	455
MmeI	TCCRAC	1 cut(s)	266
MnlI	CCTC	6 cut(s)	13, 212, 329, 623, 661, 731
Mph1103I	ATGCAT	1 cut(s)	328
MroNI	GCCGGC	1 cut(s)	771
MseI	TTAA	2 cut(s)	120, 869
MslI	CAYNNNNRTG	1 cut(s)	231
MspI	CCGG	2 cut(s)	772, 1017
MspR9I	CCNGG	3 cut(s)	135, 309, 346
Mva1269I	GAATGC	2 cut(s)	536, 594
MvaI	CCWGG	3 cut(s)	135, 309, 346
MvnI	CGCG	1 cut(s)	247
MwoI	GCNNNNNNNGC	3 cut(s)	33, 383, 891
NaeI	GCCGGC	1 cut(s)	773
NcoI	CCATGG	1 cut(s)	226
NdeII	GATC	3 cut(s)	176, 351, 793
NgoMIV	GCCGGC	1 cut(s)	771
NlaIII	CATG	7 cut(s)	230, 404, 544, 689, 724, 809, 831
NlaIV	GGNNCC	2 cut(s)	200, 801
NmuCI	GTSAC	1 cut(s)	366
NsbI	TGCGCA	1 cut(s)	893
NsiI	ATGCAT	1 cut(s)	328
NspI	RCATGY	4 cut(s)	404, 689, 809, 831
NspV	TTCGAA	1 cut(s)	605
PaeI	GCATGC	1 cut(s)	689
PagI	TCATGA	1 cut(s)	540
PciI	ACATGT	2 cut(s)	805, 827
PcsI	WCGNNNNNNNCGW	1 cut(s)	24
PctI	GAATGC	2 cut(s)	536, 594
PdiI	GCCGGC	1 cut(s)	773
PfeI	GAWTC	7 cut(s)	89, 238, 335, 452, 755, 833, 842
PfoI	TCCNGGA	1 cut(s)	344
PinAI	ACCGGT	1 cut(s)	1016
PkrI	GCNGC	4 cut(s)	560, 590, 593, 691
PleI	GAGTC	1 cut(s)	454
PpsI	GAGTC	1 cut(s)	454
PscI	ACATGT	2 cut(s)	805, 827
PshBI	ATTAAT	1 cut(s)	120
Psp6I	CCWGG	3 cut(s)	133, 307, 344
PspFI	CCCAGC	1 cut(s)	355
PspGI	CCWGG	3 cut(s)	133, 307, 344
PspN4I	GGNNCC	2 cut(s)	200, 801
PspPI	GGNCC	1 cut(s)	413
PsuI	RGATCY	3 cut(s)	176, 351, 793
RsaI	GTAC	4 cut(s)	200, 313, 673, 764
RsaNI	GTAC	4 cut(s)	199, 312, 672, 763
RseI	CAYNNNNRTG	1 cut(s)	231
SaqAI	TTAA	2 cut(s)	120, 869
SatI	GCNGC	4 cut(s)	559, 589, 592, 690
Sau3AI	GATC	3 cut(s)	176, 351, 793
Sau96I	GGNCC	1 cut(s)	413
ScaI	AGTACT	1 cut(s)	764
SchI	GAGTC	1 cut(s)	455
ScrFI	CCNGG	3 cut(s)	135, 309, 346
SduI	GDGCHC	1 cut(s)	709
SfaNI	GCATC	5 cut(s)	313, 704, 753, 772, 894
SfcI	CTRYAG	1 cut(s)	732
SfuI	TTCGAA	1 cut(s)	605
SinI	GGWCC	1 cut(s)	413
SmiMI	CAYNNNNRTG	1 cut(s)	231
SphI	GCATGC	1 cut(s)	689
Sse9I	AATT	4 cut(s)	121, 420, 1000, 1009
SspI	AATATT	1 cut(s)	874
SspMI	CTAG	1 cut(s)	42
StyD4I	CCNGG	3 cut(s)	133, 307, 344
StyI	CCWWGG	2 cut(s)	41, 226
TaaI	ACNGT	2 cut(s)	372, 733
TaiI	ACGT	1 cut(s)	934
TaqI	TCGA	3 cut(s)	321, 580, 605
TasI	AATT	4 cut(s)	121, 420, 1000, 1009
TatI	WGTACW	1 cut(s)	762
TfiI	GAWTC	7 cut(s)	89, 238, 335, 452, 755, 833, 842
Tru1I	TTAA	2 cut(s)	120, 869
Tru9I	TTAA	2 cut(s)	120, 869
TscAI	CASTG	4 cut(s)	375, 568, 736, 916
TseFI	GTSAC	1 cut(s)	366
TseI	GCWGC	4 cut(s)	558, 588, 591, 689
Tsp45I	GTSAC	1 cut(s)	366
TspDTI	ATGAA	4 cut(s)	66, 102, 529, 557
TspRI	CASTG	4 cut(s)	375, 568, 736, 916
VpaK11BI	GGWCC	1 cut(s)	413
VspI	ATTAAT	1 cut(s)	120
XceI	RCATGY	4 cut(s)	404, 689, 809, 831
XmaJI	CCTAGG	1 cut(s)	41
XspI	CTAG	1 cut(s)	42
ZrmI	AGTACT	1 cut(s)	764
Zsp2I	ATGCAT	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.