Prupe.1G015300_v2.0.a1
MYB Family

PHD - plant homeodomain finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0006336
Physical Location & Seq
Forward (+)
1104460 .. 1108760
4301 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G015300.3

Sequence Viewer

Length: 1425 bp
ATGAAGATTGATATATATGATGAAAGTGATGGAAGCACGCCTAGGCCAAAGGAAAATGGTTGTTCTCTTAAGCCAGTGTCACCTGACGAGTCTGGTGAAGGTTTGCCTTATGCTCCTGTGAATTGGCCTAATCCTGGTGATACTTGGCGCTGGAAGGTGGGAAAGAGAGTTTCTGGAGCTGGACACTATCTGGATAGGTATCTCTATCTTCCGAAGAGCCTTCGCAACGCTGGTCTAACAACACGTAAGAAATATGGTTTTGCGAGCAAGCTTGCTGTTGAACGGTATATCCAAACTGCATTTCCTGGTGCAAACATCAATGAATTTTTTGCATCATTCTCCTGGAGGATCCCAGCACAAAAGTCCTCATTGGCAAATGGTACTGCAAGGCTGAAGCATGTGCCATGTATTCCGCCTTCCGAGGAATCTGATTCGCAGTCTGACACTGTATGCTGTAAGGCCGGAAATAAGATGTGCAACAGTTTGTTGGAACAATCAGAAAACCCACCTTTGGCAGTCATGGAGTGTGATATTTGCTGCACTGAACCTAAGTTCTGTCGTTATTGCTGTTGTATTCTTTGTTGCAAGACTATAAATTCATCTGATTACATTAGATGTGAAGCAATGATGGATGAGAGTTGTATATGTGGGCATGCTGCCCACATTGATTGTGCTCTGAGATGTTACATGGCTGGCACTGTGGGAGGAAGCATTGGGTTGGATTCTGAATACTATTGCAGGCGCTGTGATGCAAGGACAGATCTGGTTTCACATGTCATGAGGATTTTACATACATGTGAATCGCTTGATTCTCGGGATGACATTGAGAAGATTTTAAATCTCGGTGTCTGCATTTTGCGGGGTTCACAAAAAACCAGTGCAAATGAGTTGCTGAAACGTATTGAAGTGGCCATTGCAAAGCTCAAATGTGGGACTTGTCTTGAAGATATTTGGAAAGAGGAAGACAATATTTCAGCTATTTCTATGGATGTCTCTCATCATGGAAATACTGCCCTGGAAGTTACAACATGCCAAGAGTCCATAGGTGTCAGAACAAGTTCGGAAGTAATGTCTACATCTTTTCATTATCGAACTGAGTCTCAAAAACTTGAGGTAGAGATTGATCAGGTTCTGCAGGCACTAAGAAAGTCACAGGAGTCTGAATTTAGAATGGCGGAGGATAGCCTTCATGCACAAAAGAACTATCTTTGTAATCTGTATCAGCAACTTGAGAAGGAGAAGTCTGATTTGGTACGGTGCACATCACCTGACCCAGATGCTTTACTGAGTACTGTATTGAGCAGAGTGAAGCAGATTAAGGGGGAAGTAAAAAAGCTCAAGGATATGGAAGAAGTGGCCAATGGGTTTGGAAAGACTTCTAGAGCTATCCTGAAGGAACACTTCAGTTTAGAAATTGAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3 PHD_Oberon

Protein Analysis

475

Amino Acids

52.98

Weight (kDa)

5.87

Isoelectric Point (pI)

51.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1073
AciI CCGC 3 cut(s) 413, 859, 1175
AclWI GGATC 2 cut(s) 343, 356
AcoI YGGCCR 2 cut(s) 909, 1356
AcsI RAATTY 3 cut(s) 323, 595, 1163
AcuI CTGAAG 3 cut(s) 413, 1387, 1412
AfaI GTAC 3 cut(s) 382, 1254, 1291
AfiI CCNNNNNNNGG 2 cut(s) 134, 511
AflII CTTAAG 1 cut(s) 68
AflIII ACRYGT 3 cut(s) 242, 772, 794
AgsI TTSAA 3 cut(s) 281, 905, 944
AjnI CCWGG 4 cut(s) 133, 304, 341, 1014
AjuI GAANNNNNNNTTGG 4 cut(s) 285, 317, 1232, 1264
AloI GAACNNNNNNTCC 2 cut(s) 273, 305
AluBI AGCT 6 cut(s) 179, 271, 922, 977, 1336, 1385
AluI AGCT 6 cut(s) 179, 271, 922, 977, 1336, 1385
Alw21I GWGCWC 2 cut(s) 676, 1262
Alw26I GTCTC 2 cut(s) 997, 1104
Alw44I GTGCAC 1 cut(s) 1258
AlwI GGATC 2 cut(s) 343, 356
AlwNI CAGNNNCTG 2 cut(s) 744, 1132
Ama87I CYCGRG 1 cut(s) 813
AoxI GGCC 5 cut(s) 44, 125, 459, 909, 1356
ApaLI GTGCAC 1 cut(s) 1258
ApeKI GCWGC 2 cut(s) 537, 656
ApoI RAATTY 3 cut(s) 323, 595, 1163
Asp700I GAANNNNTTC 2 cut(s) 1057, 1375
AspA2I CCTAGG 1 cut(s) 41
AspLEI GCGC 2 cut(s) 150, 744
AsuHPI GGTGA 4 cut(s) 72, 107, 149, 1257
AvaI CYCGRG 1 cut(s) 813
AvrII CCTAGG 1 cut(s) 41
BaeGI GKGCMC 1 cut(s) 1262
BalI TGGCCA 2 cut(s) 911, 1358
BamHI GGATCC 1 cut(s) 348
BarI GAAGNNNNNNTAC 2 cut(s) 400, 432
BbsI GAAGAC 1 cut(s) 969
Bbv12I GWGCWC 2 cut(s) 676, 1262
BbvI GCAGC 2 cut(s) 524, 643
BccI CCATC 2 cut(s) 23, 622
BciT130I CCWGG 4 cut(s) 135, 306, 343, 1016
BclI TGATCA 1 cut(s) 1123
BcoDI GTCTC 2 cut(s) 997, 1104
BfaI CTAG 2 cut(s) 42, 1380
BfmI CTRYAG 1 cut(s) 1133
BfoI RGCGCY 2 cut(s) 151, 745
BfrI CTTAAG 1 cut(s) 68
BglII AGATCT 1 cut(s) 760
BisI GCNGC 2 cut(s) 538, 657
BlnI CCTAGG 1 cut(s) 41
BlsI GCNGC 2 cut(s) 539, 658
BmcAI AGTACT 1 cut(s) 1291
Bme1390I CCNGG 4 cut(s) 135, 306, 343, 1016
BmeT110I CYCGRG 1 cut(s) 813
BmiI GGNNCC 1 cut(s) 350
BmrFI CCNGG 4 cut(s) 135, 306, 343, 1016
BmsI GCATC 3 cut(s) 341, 739, 1267
BpiI GAAGAC 1 cut(s) 969
BpmI CTGGAG 2 cut(s) 195, 364
BpuEI CTTGAG 3 cut(s) 1130, 1250, 1322
BsaAI YACGTR 1 cut(s) 245
BsaBI GATNNNNATC 1 cut(s) 198
BsaJI CCNNGG 3 cut(s) 41, 420, 1014
Bsc4I CCNNNNNNNGG 2 cut(s) 134, 511
Bse1I ACTGG 2 cut(s) 74, 876
Bse3DI GCAATG 2 cut(s) 630, 912
Bse8I GATNNNNATC 1 cut(s) 198
BseBI CCWGG 4 cut(s) 135, 306, 343, 1016
BseDI CCNNGG 3 cut(s) 41, 420, 1014
BseGI GGATG 3 cut(s) 637, 823, 994
BseJI GATNNNNATC 1 cut(s) 198
BseLI CCNNNNNNNGG 2 cut(s) 134, 511
BseMI GCAATG 2 cut(s) 630, 912
BseMII CTCAG 3 cut(s) 668, 1086, 1277
BseNI ACTGG 2 cut(s) 74, 876
BseSI GKGCMC 1 cut(s) 1262
BseXI GCAGC 2 cut(s) 524, 643
BseYI CCCAGC 1 cut(s) 352
BsgI GTGCAG 1 cut(s) 523
BshFI GGCC 5 cut(s) 46, 127, 461, 911, 1358
BsiHKAI GWGCWC 2 cut(s) 676, 1262
BsiHKCI CYCGRG 1 cut(s) 813
BsiSI CCGG 1 cut(s) 462
BslFI GGGAC 1 cut(s) 946
BslI CCNNNNNNNGG 2 cut(s) 134, 511
BsmAI GTCTC 2 cut(s) 997, 1104
BsmFI GGGAC 1 cut(s) 946
BsnI GGCC 5 cut(s) 46, 127, 461, 911, 1358
BsoBI CYCGRG 1 cut(s) 813
Bsp1286I GDGCHC 2 cut(s) 676, 1262
Bsp143I GATC 3 cut(s) 348, 760, 1123
BspACI CCGC 3 cut(s) 413, 859, 1175
BspANI GGCC 5 cut(s) 46, 127, 461, 911, 1358
BspCNI CTCAG 3 cut(s) 669, 1087, 1278
BspHI TCATGA 1 cut(s) 777
BspLI GGNNCC 1 cut(s) 350
BspMAI CTGCAG 1 cut(s) 1137
BspPI GGATC 2 cut(s) 343, 356
BspQI GCTCTTC 1 cut(s) 209
BspTI CTTAAG 1 cut(s) 68
BsrDI GCAATG 2 cut(s) 630, 912
BsrI ACTGG 2 cut(s) 74, 876
BssECI CCNNGG 3 cut(s) 41, 420, 1014
BssMI GATC 3 cut(s) 348, 760, 1123
BssT1I CCWWGG 1 cut(s) 41
Bst2UI CCWGG 4 cut(s) 135, 306, 343, 1016
Bst4CI ACNGT 6 cut(s) 285, 448, 482, 700, 1257, 1294
Bst6I CTCTTC 1 cut(s) 209
BstAFI CTTAAG 1 cut(s) 68
BstBAI YACGTR 1 cut(s) 245
BstC8I GCNNGC 8 cut(s) 38, 265, 269, 273, 654, 694, 740, 1137
BstDEI CTNAG 5 cut(s) 549, 677, 1095, 1142, 1286
BstF5I GGATG 3 cut(s) 637, 823, 994
BstH2I RGCGCY 2 cut(s) 151, 745
BstHHI GCGC 2 cut(s) 150, 744
BstKTI GATC 3 cut(s) 351, 763, 1126
BstMAI GTCTC 2 cut(s) 997, 1104
BstMBI GATC 3 cut(s) 348, 760, 1123
BstNI CCWGG 4 cut(s) 135, 306, 343, 1016
BstNSI RCATGY 5 cut(s) 401, 656, 776, 798, 1032
BstSCI CCNGG 4 cut(s) 133, 304, 341, 1014
BstSFI CTRYAG 1 cut(s) 1133
BstSLI GKGCMC 1 cut(s) 1262
BstV1I GCAGC 2 cut(s) 524, 643
BstV2I GAAGAC 1 cut(s) 969
BstX2I RGATCY 2 cut(s) 348, 760
BstYI RGATCY 2 cut(s) 348, 760
BsuRI GGCC 5 cut(s) 46, 127, 461, 911, 1358
BtsCI GGATG 3 cut(s) 637, 823, 994
BtsIMutI CAGTG 5 cut(s) 81, 444, 540, 696, 883
Cac8I GCNNGC 8 cut(s) 38, 265, 269, 273, 654, 694, 740, 1137
CaiI CAGNNNCTG 2 cut(s) 744, 1132
CciI TCATGA 1 cut(s) 777
CfoI GCGC 2 cut(s) 150, 744
Csp6I GTAC 3 cut(s) 381, 1253, 1290
CspCI CAANNNNNGTGG 2 cut(s) 650, 685
CviQI GTAC 3 cut(s) 381, 1253, 1290
DdeI CTNAG 5 cut(s) 549, 677, 1095, 1142, 1286
DpnI GATC 3 cut(s) 350, 762, 1125
DpnII GATC 3 cut(s) 348, 760, 1123
DraI TTTAAA 1 cut(s) 837
EaeI YGGCCR 2 cut(s) 909, 1356
Eam1104I CTCTTC 1 cut(s) 209
EarI CTCTTC 1 cut(s) 209
EciI GGCGGA 2 cut(s) 402, 1190
Eco130I CCWWGG 1 cut(s) 41
Eco57I CTGAAG 3 cut(s) 413, 1387, 1412
Eco88I CYCGRG 1 cut(s) 813
EcoRII CCWGG 4 cut(s) 133, 304, 341, 1014
EcoT14I CCWWGG 1 cut(s) 41
ErhI CCWWGG 1 cut(s) 41
FalI AAGNNNNNCTT 2 cut(s) 1385, 1417
FaqI GGGAC 1 cut(s) 946
FauI CCCGC 1 cut(s) 852
FbaI TGATCA 1 cut(s) 1123
FblI GTMKAC 1 cut(s) 1073
Fnu4HI GCNGC 2 cut(s) 538, 657
FokI GGATG 3 cut(s) 644, 830, 1001
Fsp4HI GCNGC 2 cut(s) 538, 657
FspBI CTAG 2 cut(s) 42, 1380
GlaI GCGC 2 cut(s) 149, 743
GluI GCNGC 2 cut(s) 538, 657
GsaI CCCAGC 1 cut(s) 356
GsuI CTGGAG 2 cut(s) 195, 364
HaeII RGCGCY 2 cut(s) 151, 745
HaeIII GGCC 5 cut(s) 46, 127, 461, 911, 1358
HapII CCGG 1 cut(s) 462
HhaI GCGC 2 cut(s) 150, 744
Hin6I GCGC 2 cut(s) 148, 742
HinP1I GCGC 2 cut(s) 148, 742
HindIII AAGCTT 1 cut(s) 269
HinfI GANTC 9 cut(s) 89, 425, 431, 722, 800, 809, 1037, 1097, 1157
HpaII CCGG 1 cut(s) 462
HphI GGTGA 4 cut(s) 72, 107, 149, 1257
Hpy166II GTNNAC 3 cut(s) 866, 1074, 1260
Hpy188III TCNNGA 7 cut(s) 174, 191, 778, 815, 941, 1380, 1390
Hpy8I GTNNAC 3 cut(s) 866, 1074, 1260
HpyAV CCTTC 7 cut(s) 92, 148, 230, 426, 1196, 1228, 1387
HpyCH4III ACNGT 6 cut(s) 285, 448, 482, 700, 1257, 1294
HpyCH4IV ACGT 2 cut(s) 244, 898
HpyF3I CTNAG 5 cut(s) 549, 677, 1095, 1142, 1286
HpySE526I ACGT 2 cut(s) 244, 898
HspAI GCGC 2 cut(s) 148, 742
Ksp22I TGATCA 1 cut(s) 1123
Kzo9I GATC 3 cut(s) 348, 760, 1123
LguI GCTCTTC 1 cut(s) 209
LmnI GCTCC 2 cut(s) 118, 176
Lsp1109I GCAGC 2 cut(s) 524, 643
LweI GCATC 3 cut(s) 341, 739, 1267
MaeI CTAG 2 cut(s) 42, 1380
MaeII ACGT 2 cut(s) 244, 898
MaeIII GTNAC 4 cut(s) 78, 683, 1021, 1149
MalI GATC 3 cut(s) 350, 762, 1125
MboI GATC 3 cut(s) 348, 760, 1123
MboII GAAGA 7 cut(s) 16, 200, 226, 841, 956, 974, 1361
MflI RGATCY 2 cut(s) 348, 760
MhlI GDGCHC 2 cut(s) 676, 1262
MlsI TGGCCA 2 cut(s) 911, 1358
MluCI AATT 5 cut(s) 121, 323, 595, 1163, 1413
MluNI TGGCCA 2 cut(s) 911, 1358
MlyI GAGTC 4 cut(s) 98, 1046, 1106, 1166
MmeI TCCRAC 2 cut(s) 468, 699
MnlI CCTC 9 cut(s) 339, 376, 415, 698, 774, 952, 1105, 1171, 1411
Mox20I TGGCCA 2 cut(s) 911, 1358
MroXI GAANNNNTTC 2 cut(s) 1057, 1375
MscI TGGCCA 2 cut(s) 911, 1358
MseI TTAA 3 cut(s) 69, 836, 1317
MslI CAYNNNNRTG 1 cut(s) 795
Msp20I TGGCCA 2 cut(s) 911, 1358
MspCI CTTAAG 1 cut(s) 68
MspI CCGG 1 cut(s) 462
MspR9I CCNGG 4 cut(s) 135, 306, 343, 1016
MvaI CCWGG 4 cut(s) 135, 306, 343, 1016
NdeII GATC 3 cut(s) 348, 760, 1123
NlaIV GGNNCC 1 cut(s) 350
NmuCI GTSAC 2 cut(s) 78, 1149
NspI RCATGY 5 cut(s) 401, 656, 776, 798, 1032
PaeI GCATGC 1 cut(s) 656
PagI TCATGA 1 cut(s) 777
PciI ACATGT 2 cut(s) 772, 794
PciSI GCTCTTC 1 cut(s) 209
PdmI GAANNNNTTC 2 cut(s) 1057, 1375
PfeI GAWTC 5 cut(s) 425, 431, 722, 800, 809
PfoI TCCNGGA 1 cut(s) 341
PkrI GCNGC 2 cut(s) 539, 658
PleI GAGTC 4 cut(s) 97, 1045, 1105, 1165
PpsI GAGTC 4 cut(s) 97, 1045, 1105, 1165
Ppu21I YACGTR 1 cut(s) 245
PscI ACATGT 2 cut(s) 772, 794
Psp6I CCWGG 4 cut(s) 133, 304, 341, 1014
PspFI CCCAGC 1 cut(s) 352
PspGI CCWGG 4 cut(s) 133, 304, 341, 1014
PspN4I GGNNCC 1 cut(s) 350
PstI CTGCAG 1 cut(s) 1137
PstNI CAGNNNCTG 2 cut(s) 744, 1132
PsuI RGATCY 2 cut(s) 348, 760
RsaI GTAC 3 cut(s) 382, 1254, 1291
RsaNI GTAC 3 cut(s) 381, 1253, 1290
RseI CAYNNNNRTG 1 cut(s) 795
SapI GCTCTTC 1 cut(s) 209
SaqAI TTAA 3 cut(s) 69, 836, 1317
SatI GCNGC 2 cut(s) 538, 657
Sau3AI GATC 3 cut(s) 348, 760, 1123
ScaI AGTACT 1 cut(s) 1291
SchI GAGTC 4 cut(s) 98, 1046, 1106, 1166
ScrFI CCNGG 4 cut(s) 135, 306, 343, 1016
SduI GDGCHC 2 cut(s) 676, 1262
SfaNI GCATC 3 cut(s) 341, 739, 1267
SfcI CTRYAG 1 cut(s) 1133
SmiMI CAYNNNNRTG 1 cut(s) 795
SmlI CTYRAG 4 cut(s) 68, 1109, 1229, 1337
SmoI CTYRAG 4 cut(s) 68, 1109, 1229, 1337
SphI GCATGC 1 cut(s) 656
Sse9I AATT 5 cut(s) 121, 323, 595, 1163, 1413
SsiI CCGC 3 cut(s) 413, 859, 1175
SspI AATATT 1 cut(s) 970
SspMI CTAG 2 cut(s) 42, 1380
StyD4I CCNGG 4 cut(s) 133, 304, 341, 1014
StyI CCWWGG 1 cut(s) 41
TaaI ACNGT 6 cut(s) 285, 448, 482, 700, 1257, 1294
TaiI ACGT 2 cut(s) 247, 901
TaqI TCGA 1 cut(s) 1090
TasI AATT 5 cut(s) 121, 323, 595, 1163, 1413
TatI WGTACW 1 cut(s) 1289
TfiI GAWTC 5 cut(s) 425, 431, 722, 800, 809
Tru1I TTAA 3 cut(s) 69, 836, 1317
Tru9I TTAA 3 cut(s) 69, 836, 1317
TscAI CASTG 5 cut(s) 81, 451, 547, 703, 883
TseFI GTSAC 2 cut(s) 78, 1149
TseI GCWGC 2 cut(s) 537, 656
Tsp45I GTSAC 2 cut(s) 78, 1149
TspDTI ATGAA 6 cut(s) 17, 36, 336, 588, 1073, 1178
TspRI CASTG 5 cut(s) 81, 451, 547, 703, 883
Vha464I CTTAAG 1 cut(s) 68
VneI GTGCAC 1 cut(s) 1258
XapI RAATTY 3 cut(s) 323, 595, 1163
XbaI TCTAGA 1 cut(s) 1379
XceI RCATGY 5 cut(s) 401, 656, 776, 798, 1032
XmaJI CCTAGG 1 cut(s) 41
XmiI GTMKAC 1 cut(s) 1073
XmnI GAANNNNTTC 2 cut(s) 1057, 1375
XspI CTAG 2 cut(s) 42, 1380
ZrmI AGTACT 1 cut(s) 1291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.