FvH4_4g16310
MYB Family

PHD - plant homeodomain finger protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
20300870 .. 20305997
5128 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g16310.t4

Sequence Viewer

Length: 1374 bp
ATGATGGAGATTGACATTCATGAGGAAAGCGATGGAAGCACACCTAGGGCAAATGAAAATGACCTGTCTAATAGGCGAGTTGCACCTGATGAGTCTGGTGAAGGTTTGCCTTATGCTCCTGTTAATTGGCCTAATCCCGGTGATACTTGGCGGTGGAAAGTGGGAAAGCGAGTTTCTGGATCTGGACACTTTCTGGATAGGTACCTTTATCTTCCAAAGAGACTTTGCCATGATGGGGCCGGGAATTCTACGGGTAGGAGAAATAGTTTTGCAAGCAAGCTTGCAGTTGAACGATATATCCAAGCATCATTTCCTGGTACAGACCTCAAAGAATTTTTTGCATCATTCTCGTGGAAGATTCCAGCGGAAATGTCACTGTTAGCAAATGGTGCTGTAAAGCTGAAGCATGTTCCAGCTGTTCCACCTATTCCACCTTGTGTGGGAATTGAAGAGTCTGATTCTCAGTCTGATGGCTTATGCTGTAAGGCCCGAAATAAGTTGTGCATCAGTTTGTTGGAAAAAGCAGAAAACCCACCCTTAGTATTCATGGAGTGTGATATTTGCTGCACTGAGGCTAAGTTCTGTCGAGATTGCTGCTGCATTCTTTGTTCGAAGACTATAAATTTCTCCTATGGAGGCTATGATTACATCAGATGTGAAGCACTGACGGGCGAGGCTGTTATATGTGGGCATGCTGCCCACATTGATTGTGCTCTCCGATGCTACATGGCTGGCACTGTAGGAGGAAGCATTGCATTGGATTCTGAGTACTATTGCCGGCGCTGTGATGCAAGGACAGATCTGGTTCCACATGTGATGAGGCTTTTACACACATGTGAATCCCTTGATTCTCGGGACAACATTGAGAAGATCTTAAATATTGGTATCTGCATCTTGCGCAGTTCCGGGAAAACCATTGCTAAGGAGTTGCTCAAACGTATTGAAGTGGCTATTGCAAAGCTCAAATATGGGACTTCTCTTGAAGATATTTGGAAGCAGGAAGATGGCTCTCATCATGAAAGTACTGCTATGGAAGTGACAACAAACCAGGAGCCCTTGAATGAAGACGTTGATCAGGTTCTGCATGCACTAAAGAACTCCCAAGAGTCTGAATATAAGGTGGTTGAGGAAAAACTTCTTGCACAGAAGAACTATATTTGTAATCTGTATCAGCAGCTTGAGAAGGAGAAGTCTGATCTGGCACGTCGCACATCAACCGACCCTGATGCTTTACTCGATATTGTATTGAGCAGGGTGAAGCAGATTAAAAGGGAAATCACAAATCTCAAGGAGATGGAGCAGATAGCCTCTGGATTTGGAAAGACTTCCAGAGCTACCCTGAAAAAGCACTTCAATTTTGAAGTTGAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

458

Amino Acids

51.2

Weight (kDa)

5.84

Isoelectric Point (pI)

46.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7081 PF23299 27 - 122 1.1e-39 Domain of unknown function (DUF7081)
PHD_Oberon PF07227 163 - 297 5e-34 PHD - plant homeodomain finger protein
DUF7615 PF24590 370 - 472 8.5e-39 Domain of unknown function (DUF7615)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 899
Acc65I GGTACC 1 cut(s) 201
AccB1I GGYRCC 1 cut(s) 201
AciI CCGC 2 cut(s) 151, 365
AclWI GGATC 1 cut(s) 187
AcsI RAATTY 3 cut(s) 244, 332, 622
AcuI CTGAAG 1 cut(s) 422
AdeI CACNNNGTG 1 cut(s) 437
AfaI GTAC 4 cut(s) 203, 319, 770, 1024
AfiI CCNNNNNNNGG 3 cut(s) 137, 235, 440
AflIII ACRYGT 2 cut(s) 811, 833
AgsI TTSAA 7 cut(s) 290, 449, 944, 983, 1060, 1354, 1361
AjiI CACGTC 1 cut(s) 1205
AjnI CCWGG 2 cut(s) 313, 1047
AjuI GAANNNNNNNTTGG 2 cut(s) 294, 326
AleI CACNNNNGTG 1 cut(s) 834
AloI GAACNNNNNNTCC 2 cut(s) 282, 314
AluBI AGCT 6 cut(s) 280, 400, 416, 961, 1177, 1334
AluI AGCT 6 cut(s) 280, 400, 416, 961, 1177, 1334
Alw21I GWGCWC 1 cut(s) 715
Alw26I GTCTC 1 cut(s) 214
AlwI GGATC 1 cut(s) 187
AlwNI CAGNNNCTG 1 cut(s) 1081
Ama87I CYCGRG 1 cut(s) 852
AoxI GGCC 3 cut(s) 128, 237, 486
ApeKI GCWGC 5 cut(s) 564, 594, 597, 695, 1174
ApoI RAATTY 3 cut(s) 244, 332, 622
Asp700I GAANNNNTTC 2 cut(s) 1134, 1324
Asp718I GGTACC 1 cut(s) 201
AspA2I CCTAGG 1 cut(s) 44
AspLEI GCGC 2 cut(s) 783, 900
AspS9I GGNCC 2 cut(s) 237, 487
AsuC2I CCSGG 3 cut(s) 138, 241, 907
AsuHPI GGTGA 3 cut(s) 110, 152, 1267
AsuII TTCGAA 1 cut(s) 611
AvaI CYCGRG 1 cut(s) 852
AvrII CCTAGG 1 cut(s) 44
BanI GGYRCC 1 cut(s) 201
BanII GRGCYC 1 cut(s) 1056
BauI CACGAG 1 cut(s) 349
BbsI GAAGAC 2 cut(s) 620, 1071
Bbv12I GWGCWC 1 cut(s) 715
BbvI GCAGC 5 cut(s) 551, 581, 584, 682, 1186
BccI CCATC 5 cut(s) 26, 227, 464, 998, 1288
BcgI CGANNNNNNTGC 6 cut(s) 330, 364, 576, 610, 1208, 1242
BciT130I CCWGG 2 cut(s) 315, 1049
BclI TGATCA 1 cut(s) 1072
BcnI CCSGG 3 cut(s) 138, 241, 907
BcoDI GTCTC 1 cut(s) 214
BfaI CTAG 1 cut(s) 45
BfmI CTRYAG 1 cut(s) 738
BfoI RGCGCY 1 cut(s) 784
BglII AGATCT 2 cut(s) 799, 870
BisI GCNGC 5 cut(s) 565, 595, 598, 696, 1175
BlnI CCTAGG 1 cut(s) 44
BlsI GCNGC 5 cut(s) 566, 596, 599, 697, 1176
BmcAI AGTACT 2 cut(s) 770, 1024
Bme1390I CCNGG 5 cut(s) 138, 241, 315, 907, 1049
BmeT110I CYCGRG 1 cut(s) 852
BmgBI CACGTC 1 cut(s) 1205
BmgT120I GGNCC 2 cut(s) 237, 487
BmiI GGNNCC 4 cut(s) 203, 238, 807, 1053
BmrFI CCNGG 5 cut(s) 138, 241, 315, 907, 1049
BmsI GCATC 7 cut(s) 314, 350, 513, 710, 778, 900, 1216
BpiI GAAGAC 2 cut(s) 620, 1071
Bpu10I CCTNAGC 1 cut(s) 921
Bpu14I TTCGAA 1 cut(s) 611
BpuEI CTTGAG 2 cut(s) 1199, 1271
BpuMI CCSGG 3 cut(s) 138, 241, 907
BsaJI CCNNGG 1 cut(s) 44
BsaXI ACNNNNNCTCC 2 cut(s) 250, 280
Bsc4I CCNNNNNNNGG 3 cut(s) 137, 235, 440
Bse118I RCCGGY 1 cut(s) 777
Bse3DI GCAATG 2 cut(s) 750, 915
BseBI CCWGG 2 cut(s) 315, 1049
BseDI CCNNGG 1 cut(s) 44
BseLI CCNNNNNNNGG 3 cut(s) 137, 235, 440
BseMI GCAATG 2 cut(s) 750, 915
BseMII CTCAG 3 cut(s) 476, 561, 756
BseXI GCAGC 5 cut(s) 551, 581, 584, 682, 1186
BsgI GTGCAG 1 cut(s) 550
BshFI GGCC 3 cut(s) 130, 239, 488
BshNI GGYRCC 1 cut(s) 201
BsiHKAI GWGCWC 1 cut(s) 715
BsiHKCI CYCGRG 1 cut(s) 852
BsiSI CCGG 4 cut(s) 138, 240, 778, 906
BslFI GGGAC 2 cut(s) 869, 985
BslI CCNNNNNNNGG 3 cut(s) 137, 235, 440
BsmAI GTCTC 1 cut(s) 214
BsmFI GGGAC 2 cut(s) 869, 985
BsmI GAATGC 1 cut(s) 600
BsnI GGCC 3 cut(s) 130, 239, 488
BsoBI CYCGRG 1 cut(s) 852
Bsp119I TTCGAA 1 cut(s) 611
Bsp1286I GDGCHC 2 cut(s) 715, 1056
Bsp143I GATC 5 cut(s) 179, 799, 870, 1072, 1195
BspACI CCGC 2 cut(s) 151, 365
BspANI GGCC 3 cut(s) 130, 239, 488
BspCNI CTCAG 3 cut(s) 475, 562, 757
BspHI TCATGA 2 cut(s) 19, 1015
BspLI GGNNCC 4 cut(s) 203, 238, 807, 1053
BspPI GGATC 1 cut(s) 187
BspT104I TTCGAA 1 cut(s) 611
BspT107I GGYRCC 1 cut(s) 201
BsrDI GCAATG 2 cut(s) 750, 915
BsrFI RCCGGY 1 cut(s) 777
BssAI RCCGGY 1 cut(s) 777
BssECI CCNNGG 1 cut(s) 44
BssMI GATC 5 cut(s) 179, 799, 870, 1072, 1195
BssSI CACGAG 1 cut(s) 349
BssT1I CCWWGG 1 cut(s) 44
Bst2BI CACGAG 1 cut(s) 349
Bst2UI CCWGG 2 cut(s) 315, 1049
Bst4CI ACNGT 2 cut(s) 378, 739
Bst6I CTCTTC 1 cut(s) 444
BstAPI GCANNNNNTGC 1 cut(s) 389
BstBI TTCGAA 1 cut(s) 611
BstC8I GCNNGC 7 cut(s) 274, 278, 282, 693, 733, 779, 1086
BstDEI CTNAG 6 cut(s) 462, 538, 570, 576, 765, 921
BstH2I RGCGCY 1 cut(s) 784
BstHHI GCGC 2 cut(s) 783, 900
BstKTI GATC 5 cut(s) 182, 802, 873, 1075, 1198
BstMAI GTCTC 1 cut(s) 214
BstMBI GATC 5 cut(s) 179, 799, 870, 1072, 1195
BstMWI GCNNNNNNNGC 3 cut(s) 36, 389, 897
BstNI CCWGG 2 cut(s) 315, 1049
BstNSI RCATGY 5 cut(s) 410, 695, 815, 837, 1088
BstSCI CCNGG 5 cut(s) 136, 239, 313, 905, 1047
BstSFI CTRYAG 1 cut(s) 738
BstV1I GCAGC 5 cut(s) 551, 581, 584, 682, 1186
BstV2I GAAGAC 2 cut(s) 620, 1071
BstX2I RGATCY 3 cut(s) 179, 799, 870
BstYI RGATCY 3 cut(s) 179, 799, 870
BsuRI GGCC 3 cut(s) 130, 239, 488
BtgZI GCGATG 1 cut(s) 45
BtrI CACGTC 1 cut(s) 1205
BtsIMutI CAGTG 4 cut(s) 374, 567, 662, 735
Cac8I GCNNGC 7 cut(s) 274, 278, 282, 693, 733, 779, 1086
CaiI CAGNNNCTG 1 cut(s) 1081
CciI TCATGA 2 cut(s) 19, 1015
CfoI GCGC 2 cut(s) 783, 900
Cfr10I RCCGGY 1 cut(s) 777
Cfr13I GGNCC 2 cut(s) 237, 487
Csp6I GTAC 4 cut(s) 202, 318, 769, 1023
CspCI CAANNNNNGTGG 2 cut(s) 689, 724
CviQI GTAC 4 cut(s) 202, 318, 769, 1023
DdeI CTNAG 6 cut(s) 462, 538, 570, 576, 765, 921
DpnI GATC 5 cut(s) 181, 801, 872, 1074, 1197
DpnII GATC 5 cut(s) 179, 799, 870, 1072, 1195
DraIII CACNNNGTG 1 cut(s) 437
Eam1104I CTCTTC 1 cut(s) 444
EarI CTCTTC 1 cut(s) 444
Eco130I CCWWGG 1 cut(s) 44
Eco24I GRGCYC 1 cut(s) 1056
Eco57I CTGAAG 1 cut(s) 422
Eco88I CYCGRG 1 cut(s) 852
EcoRI GAATTC 1 cut(s) 244
EcoRII CCWGG 2 cut(s) 313, 1047
EcoT14I CCWWGG 1 cut(s) 44
EcoT38I GRGCYC 1 cut(s) 1056
ErhI CCWWGG 1 cut(s) 44
FaqI GGGAC 2 cut(s) 869, 985
FbaI TGATCA 1 cut(s) 1072
Fnu4HI GCNGC 5 cut(s) 565, 595, 598, 696, 1175
FriOI GRGCYC 1 cut(s) 1056
Fsp4HI GCNGC 5 cut(s) 565, 595, 598, 696, 1175
FspBI CTAG 1 cut(s) 45
FspI TGCGCA 1 cut(s) 899
GlaI GCGC 2 cut(s) 782, 899
GluI GCNGC 5 cut(s) 565, 595, 598, 696, 1175
HaeII RGCGCY 1 cut(s) 784
HaeIII GGCC 3 cut(s) 130, 239, 488
HapII CCGG 4 cut(s) 138, 240, 778, 906
HhaI GCGC 2 cut(s) 783, 900
Hin6I GCGC 2 cut(s) 781, 898
HinP1I GCGC 2 cut(s) 781, 898
HindIII AAGCTT 1 cut(s) 278
HinfI GANTC 8 cut(s) 92, 358, 452, 458, 761, 839, 848, 1106
HpaII CCGG 4 cut(s) 138, 240, 778, 906
HphI GGTGA 3 cut(s) 110, 152, 1267
Hpy188I TCNGA 7 cut(s) 457, 469, 653, 719, 766, 1111, 1195
Hpy99I CGWCG 1 cut(s) 1209
HpyAV CCTTC 2 cut(s) 95, 1177
HpyCH4III ACNGT 2 cut(s) 378, 739
HpyCH4IV ACGT 3 cut(s) 937, 1068, 1204
HpyF10VI GCNNNNNNNGC 3 cut(s) 36, 389, 897
HpyF3I CTNAG 6 cut(s) 462, 538, 570, 576, 765, 921
HpySE526I ACGT 3 cut(s) 937, 1068, 1204
HspAI GCGC 2 cut(s) 781, 898
KpnI GGTACC 1 cut(s) 205
KroI GCCGGC 1 cut(s) 777
KroNI GCCGGC 1 cut(s) 779
Ksp22I TGATCA 1 cut(s) 1072
Kzo9I GATC 5 cut(s) 179, 799, 870, 1072, 1195
LmnI GCTCC 3 cut(s) 121, 1051, 1297
Lsp1109I GCAGC 5 cut(s) 551, 581, 584, 682, 1186
LweI GCATC 7 cut(s) 314, 350, 513, 710, 778, 900, 1216
MaeI CTAG 1 cut(s) 45
MaeII ACGT 3 cut(s) 937, 1068, 1204
MaeIII GTNAC 2 cut(s) 372, 1036
MalI GATC 5 cut(s) 181, 801, 872, 1074, 1197
MboI GATC 5 cut(s) 179, 799, 870, 1072, 1195
MboII GAAGA 9 cut(s) 203, 367, 461, 625, 880, 995, 1013, 1076, 1159
MflI RGATCY 3 cut(s) 179, 799, 870
MhlI GDGCHC 2 cut(s) 715, 1056
MluCI AATT 6 cut(s) 124, 244, 332, 444, 622, 1354
MlyI GAGTC 3 cut(s) 101, 461, 1115
MmeI TCCRAC 1 cut(s) 495
MroNI GCCGGC 1 cut(s) 777
MroXI GAANNNNTTC 2 cut(s) 1134, 1324
MseI TTAA 3 cut(s) 123, 875, 1266
MslI CAYNNNNRTG 2 cut(s) 349, 834
MspA1I CMGCKG 2 cut(s) 365, 416
MspI CCGG 4 cut(s) 138, 240, 778, 906
MspR9I CCNGG 5 cut(s) 138, 241, 315, 907, 1049
Mva1269I GAATGC 1 cut(s) 600
MvaI CCWGG 2 cut(s) 315, 1049
MwoI GCNNNNNNNGC 3 cut(s) 36, 389, 897
NaeI GCCGGC 1 cut(s) 779
NciI CCSGG 3 cut(s) 138, 241, 907
NdeII GATC 5 cut(s) 179, 799, 870, 1072, 1195
NgoMIV GCCGGC 1 cut(s) 777
NlaIV GGNNCC 4 cut(s) 203, 238, 807, 1053
NmuCI GTSAC 2 cut(s) 372, 1036
NsbI TGCGCA 1 cut(s) 899
NspI RCATGY 5 cut(s) 410, 695, 815, 837, 1088
NspV TTCGAA 1 cut(s) 611
OliI CACNNNNGTG 1 cut(s) 834
PaeI GCATGC 2 cut(s) 695, 1088
PagI TCATGA 2 cut(s) 19, 1015
PciI ACATGT 2 cut(s) 811, 833
PctI GAATGC 1 cut(s) 600
PdiI GCCGGC 1 cut(s) 779
PdmI GAANNNNTTC 2 cut(s) 1134, 1324
PfeI GAWTC 5 cut(s) 358, 458, 761, 839, 848
PfoI TCCNGGA 1 cut(s) 905
PkrI GCNGC 5 cut(s) 566, 596, 599, 697, 1176
PleI GAGTC 3 cut(s) 100, 460, 1114
PpsI GAGTC 3 cut(s) 100, 460, 1114
PscI ACATGT 2 cut(s) 811, 833
Psp6I CCWGG 2 cut(s) 313, 1047
PspGI CCWGG 2 cut(s) 313, 1047
PspN4I GGNNCC 4 cut(s) 203, 238, 807, 1053
PspPI GGNCC 2 cut(s) 237, 487
PstNI CAGNNNCTG 1 cut(s) 1081
PsuI RGATCY 3 cut(s) 179, 799, 870
PvuII CAGCTG 1 cut(s) 416
RsaI GTAC 4 cut(s) 203, 319, 770, 1024
RsaNI GTAC 4 cut(s) 202, 318, 769, 1023
RseI CAYNNNNRTG 2 cut(s) 349, 834
SaqAI TTAA 3 cut(s) 123, 875, 1266
SatI GCNGC 5 cut(s) 565, 595, 598, 696, 1175
Sau3AI GATC 5 cut(s) 179, 799, 870, 1072, 1195
Sau96I GGNCC 2 cut(s) 237, 487
ScaI AGTACT 2 cut(s) 770, 1024
SchI GAGTC 3 cut(s) 101, 461, 1115
ScrFI CCNGG 5 cut(s) 138, 241, 315, 907, 1049
SduI GDGCHC 2 cut(s) 715, 1056
SfaNI GCATC 7 cut(s) 314, 350, 513, 710, 778, 900, 1216
SfcI CTRYAG 1 cut(s) 738
SfuI TTCGAA 1 cut(s) 611
SmiMI CAYNNNNRTG 2 cut(s) 349, 834
SmlI CTYRAG 2 cut(s) 1178, 1286
SmoI CTYRAG 2 cut(s) 1178, 1286
SphI GCATGC 2 cut(s) 695, 1088
Sse9I AATT 6 cut(s) 124, 244, 332, 444, 622, 1354
SsiI CCGC 2 cut(s) 151, 365
SspI AATATT 1 cut(s) 880
SspMI CTAG 1 cut(s) 45
StyD4I CCNGG 5 cut(s) 136, 239, 313, 905, 1047
StyI CCWWGG 1 cut(s) 44
TaaI ACNGT 2 cut(s) 378, 739
TaiI ACGT 3 cut(s) 940, 1071, 1207
TaqI TCGA 3 cut(s) 586, 611, 1236
TasI AATT 6 cut(s) 124, 244, 332, 444, 622, 1354
TatI WGTACW 2 cut(s) 768, 1022
TfiI GAWTC 5 cut(s) 358, 458, 761, 839, 848
Tru1I TTAA 3 cut(s) 123, 875, 1266
Tru9I TTAA 3 cut(s) 123, 875, 1266
TscAI CASTG 4 cut(s) 381, 574, 669, 742
TseFI GTSAC 2 cut(s) 372, 1036
TseI GCWGC 5 cut(s) 564, 594, 597, 695, 1174
Tsp45I GTSAC 2 cut(s) 372, 1036
TspDTI ATGAA 5 cut(s) 8, 69, 535, 1032, 1077
TspRI CASTG 4 cut(s) 381, 574, 669, 742
XapI RAATTY 3 cut(s) 244, 332, 622
XceI RCATGY 5 cut(s) 410, 695, 815, 837, 1088
XmaJI CCTAGG 1 cut(s) 44
XmnI GAANNNNTTC 2 cut(s) 1134, 1324
XspI CTAG 1 cut(s) 45
ZrmI AGTACT 2 cut(s) 770, 1024
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.