AT1G06210

GAT domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011482
Physical Location & Seq
Forward (+)
1897129 .. 1899237
2109 bp
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UTR
Exon/CDS
Intron
AT1G06210.2

Sequence Viewer

Length: 1152 bp
ATGGACAAATTGAAGATAGCAGAATGGGGAGAGAAGCTGAAGACTGGTGGAGCTCAGATGAGCAGAATGGTGAGTGAGAAAGTGAAAGATATGCTTCAAGCTCCAACCTTGGAATCCAAAATGGTGGATGAAGCTACTTTAGAGACTTTAGAGGAGCCTAATTGGGGAATGAACATGAGGATTTGTGCTCAGATTAACAACGATGAGTTTAACGGCACTGAGATTGTTAGAGCTATCAAGAGGAAGATCTCAGGTAAGAGCCCTGTGAGCCAAAGGCTGAGCCTTGAGCTTTTAGAGGCTTGTGCTATGAATTGCGAGAAGGTTTTCTCTGAAGTTGCTTCTGAGAAAGTTCTTGATGAGATGGTTTGGTTAATCAAGAACGGAGAAGCTGATTCCGAGAACAGAAAGCGAGCTTTTCAGCTTATTAGAGCTTGGGGACAATCCCAAGATCTTACTTATCTTCCTGTTTTCCACCAGACTTATATGAGCTTGGAAGGCGAAAATGGATTACACGCTCGAGGTGAAGAGAATTCAATGCCGGGACAAAGTTCTCTGGAGTCTCTTATGCAACGGCCTGTTCCAGTGCCTCCACCTGGTAGCTATCCGGTTCCTAATCAAGAACAGGCTCTTGGGGACGATGATGGTCTTGACTATAACTTTGGGAACTTATCGATAAAGGATAAGAAAGAACAGATTGAGATTACACGGAACAGCCTCGAATTGCTCTCTAGCATGTTGAATACTGAAGGAAAGCCAAATCACACAGAGGACGATCTAACGGTTAGCCTGATGGAGAAATGCAAGCAATCGCAGCCATTGATTCAAATGATCATAGAGAGTACAACAGACGACGAGGGAGTCCTGTTCGAGGCTCTGCATCTGAATGATGAGCTCCAACAAGTTTTATCTAGTTACAAGAAGCCTGATGAAACCGAAAAGAAAGCCTCCATTGTGGAACAAGAATCATCAGGAAGCAAAGATACTGGTCCGAAACCAACAGAACAAGAAGAACAAGAGCCTGTAAAGAAAACGGGTGCTGATGATGACAAAAAACATTCAGAAGCATCAGGATCCTCCAACAAAACCGTCAAAGAAGAGAAGCAGGCCGTGAAAATAGAACTGGGGCTTTCGAGTGATGAAGATGAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0032182 GO:0043130 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GAT VHS

Protein Analysis

383

Amino Acids

42.8

Weight (kDa)

4.71

Isoelectric Point (pI)

49.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VHS PF00790 39 - 148 4.3e-21 VHS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011482)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06210 AT1G06210
fragaria_vesca FvH4_2g21370 FvH4_2g21370
malus_domestica MD05G1196400.v1.1
prunus_persica Prupe.8G222800_v2.0.a1
pyrus_communis pycom05g18340
rosa_chinensis RchiOBHm_Chr6g0287961
rosa_laevigata RLG00000012451
rosa_multiflora Rmu_sc0005266.1_g000005 Rmu_sc0005309.1_g000002
rosa_roxburghii Rroxscaffold_7G00180630 Rroxscaffold_7G00180910
rosa_rugosa Rorug06G0193700
rosa_samantha Rh6AG303000 Rh6BG309200 Rh6CG300500 Rh6CG316900 Rh6DG301700
rosa_wichuraiana Rw6G026200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 857
AclWI GGATC 2 cut(s) 1065, 1078
AcsI RAATTY 1 cut(s) 529
AcuI CTGAAG 3 cut(s) 59, 351, 765
AfaI GTAC 1 cut(s) 841
AfiI CCNNNNNNNGG 3 cut(s) 164, 593, 868
AgsI TTSAA 5 cut(s) 13, 98, 534, 739, 824
AjnI CCWGG 1 cut(s) 592
AjuI GAANNNNNNNTTGG 2 cut(s) 612, 644
Alw21I GWGCWC 3 cut(s) 55, 190, 894
Alw26I GTCTC 2 cut(s) 137, 564
AlwI GGATC 2 cut(s) 1065, 1078
Ama87I CYCGRG 1 cut(s) 516
AoxI GGCC 2 cut(s) 572, 1104
ApeKI GCWGC 1 cut(s) 811
ApoI RAATTY 1 cut(s) 529
ArsI GACNNNNNNTTYG 2 cut(s) 641, 673
Asp700I GAANNNNTTC 1 cut(s) 323
AspS9I GGNCC 1 cut(s) 986
AsuC2I CCSGG 1 cut(s) 540
AsuHPI GGTGA 2 cut(s) 82, 533
AvaI CYCGRG 1 cut(s) 516
AvaII GGWCC 1 cut(s) 986
BamHI GGATCC 1 cut(s) 1070
BanII GRGCYC 3 cut(s) 55, 263, 894
BarI GAAGNNNNNNTAC 2 cut(s) 964, 996
BbsI GAAGAC 1 cut(s) 47
Bbv12I GWGCWC 3 cut(s) 55, 190, 894
BbvI GCAGC 1 cut(s) 823
BccI CCATC 3 cut(s) 355, 635, 784
BceAI ACGGC 3 cut(s) 229, 587, 1091
BciT130I CCWGG 1 cut(s) 594
BclI TGATCA 1 cut(s) 828
BcnI CCSGG 1 cut(s) 540
BcoDI GTCTC 2 cut(s) 137, 564
BfaI CTAG 2 cut(s) 729, 909
BglII AGATCT 2 cut(s) 246, 448
BisI GCNGC 1 cut(s) 812
BlpI GCTNAGC 1 cut(s) 278
BlsI GCNGC 1 cut(s) 813
Bme1390I CCNGG 2 cut(s) 540, 594
Bme18I GGWCC 1 cut(s) 986
BmeT110I CYCGRG 1 cut(s) 516
BmgT120I GGNCC 1 cut(s) 986
BmiI GGNNCC 3 cut(s) 156, 609, 1072
BmrFI CCNGG 2 cut(s) 540, 594
BmrI ACTGGG 1 cut(s) 1130
BmsI GCATC 2 cut(s) 886, 1073
BmuI ACTGGG 1 cut(s) 1130
BpiI GAAGAC 1 cut(s) 47
BpmI CTGGAG 1 cut(s) 575
Bpu1102I GCTNAGC 1 cut(s) 278
BpuEI CTTGAG 1 cut(s) 305
BpuMI CCSGG 1 cut(s) 540
Bsa29I ATCGAT 1 cut(s) 671
BsaJI CCNNGG 1 cut(s) 108
BsaWI WCCGGW 1 cut(s) 604
Bsc4I CCNNNNNNNGG 3 cut(s) 164, 593, 868
Bse1I ACTGG 4 cut(s) 49, 581, 988, 1125
BseBI CCWGG 1 cut(s) 594
BseCI ATCGAT 1 cut(s) 671
BseDI CCNNGG 1 cut(s) 108
BseGI GGATG 1 cut(s) 133
BseLI CCNNNNNNNGG 3 cut(s) 164, 593, 868
BseMII CTCAG 6 cut(s) 68, 203, 210, 264, 269, 333
BseNI ACTGG 4 cut(s) 49, 581, 988, 1125
BseRI GAGGAG 1 cut(s) 167
BseXI GCAGC 1 cut(s) 823
BshFI GGCC 2 cut(s) 574, 1106
BshVI ATCGAT 1 cut(s) 671
BsiHKAI GWGCWC 3 cut(s) 55, 190, 894
BsiHKCI CYCGRG 1 cut(s) 516
BsiSI CCGG 2 cut(s) 539, 605
BslFI GGGAC 3 cut(s) 450, 555, 647
BslI CCNNNNNNNGG 3 cut(s) 164, 593, 868
BsmAI GTCTC 2 cut(s) 137, 564
BsmFI GGGAC 3 cut(s) 450, 555, 647
BsnI GGCC 2 cut(s) 574, 1106
BsoBI CYCGRG 1 cut(s) 516
Bsp1286I GDGCHC 4 cut(s) 55, 190, 263, 894
Bsp143I GATC 5 cut(s) 246, 448, 772, 828, 1070
Bsp1720I GCTNAGC 1 cut(s) 278
BspANI GGCC 2 cut(s) 574, 1106
BspCNI CTCAG 6 cut(s) 67, 202, 211, 263, 270, 334
BspDI ATCGAT 1 cut(s) 671
BspLI GGNNCC 3 cut(s) 156, 609, 1072
BspPI GGATC 2 cut(s) 1065, 1078
BsrI ACTGG 4 cut(s) 49, 581, 988, 1125
BssECI CCNNGG 1 cut(s) 108
BssMI GATC 5 cut(s) 246, 448, 772, 828, 1070
BssT1I CCWWGG 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 594
Bst4CI ACNGT 2 cut(s) 781, 1087
Bst6I CTCTTC 2 cut(s) 519, 1089
BstC8I GCNNGC 3 cut(s) 411, 803, 1104
BstDEI CTNAG 6 cut(s) 54, 189, 219, 250, 278, 342
BstENI CCTNNNNNAGG 1 cut(s) 866
BstF5I GGATG 1 cut(s) 133
BstKTI GATC 5 cut(s) 249, 451, 775, 831, 1073
BstMAI GTCTC 2 cut(s) 137, 564
BstMBI GATC 5 cut(s) 246, 448, 772, 828, 1070
BstMWI GCNNNNNNNGC 3 cut(s) 267, 495, 811
BstNI CCWGG 1 cut(s) 594
BstNSI RCATGY 1 cut(s) 736
BstSCI CCNGG 2 cut(s) 538, 592
BstV1I GCAGC 1 cut(s) 823
BstV2I GAAGAC 1 cut(s) 47
BstX2I RGATCY 3 cut(s) 246, 448, 1070
BstXI CCANNNNNNTGG 1 cut(s) 124
BstYI RGATCY 3 cut(s) 246, 448, 1070
Bsu15I ATCGAT 1 cut(s) 671
BsuRI GGCC 2 cut(s) 574, 1106
BsuTUI ATCGAT 1 cut(s) 671
BtsCI GGATG 1 cut(s) 133
BtsIMutI CAGTG 2 cut(s) 216, 588
Cac8I GCNNGC 3 cut(s) 411, 803, 1104
Cfr13I GGNCC 1 cut(s) 986
ClaI ATCGAT 1 cut(s) 671
CsiI ACCWGGT 1 cut(s) 592
Csp6I GTAC 1 cut(s) 840
CviAII CATG 2 cut(s) 175, 733
CviQI GTAC 1 cut(s) 840
DdeI CTNAG 6 cut(s) 54, 189, 219, 250, 278, 342
DpnI GATC 5 cut(s) 248, 450, 774, 830, 1072
DpnII GATC 5 cut(s) 246, 448, 772, 828, 1070
DrdI GACNNNNNNGTC 1 cut(s) 857
DseDI GACNNNNNNGTC 1 cut(s) 857
Eam1104I CTCTTC 2 cut(s) 519, 1089
EarI CTCTTC 2 cut(s) 519, 1089
Ecl136II GAGCTC 2 cut(s) 53, 892
Eco130I CCWWGG 1 cut(s) 108
Eco24I GRGCYC 3 cut(s) 55, 263, 894
Eco47I GGWCC 1 cut(s) 986
Eco53kI GAGCTC 2 cut(s) 53, 892
Eco57I CTGAAG 3 cut(s) 59, 351, 765
Eco88I CYCGRG 1 cut(s) 516
EcoICRI GAGCTC 2 cut(s) 53, 892
EcoNI CCTNNNNNAGG 1 cut(s) 866
EcoRI GAATTC 1 cut(s) 529
EcoRII CCWGG 1 cut(s) 592
EcoT14I CCWWGG 1 cut(s) 108
EcoT38I GRGCYC 3 cut(s) 55, 263, 894
ErhI CCWWGG 1 cut(s) 108
FaeI CATG 2 cut(s) 178, 736
FaiI YATR 9 cut(s) 92, 176, 308, 483, 485, 566, 654, 734, 833
FalI AAGNNNNNCTT 2 cut(s) 78, 110
FaqI GGGAC 3 cut(s) 450, 555, 647
FatI CATG 2 cut(s) 174, 732
FbaI TGATCA 1 cut(s) 828
Fnu4HI GCNGC 1 cut(s) 812
FokI GGATG 1 cut(s) 140
FriOI GRGCYC 3 cut(s) 55, 263, 894
Fsp4HI GCNGC 1 cut(s) 812
FspBI CTAG 2 cut(s) 729, 909
GluI GCNGC 1 cut(s) 812
GsuI CTGGAG 1 cut(s) 575
HaeIII GGCC 2 cut(s) 574, 1106
HapII CCGG 2 cut(s) 539, 605
Hin1II CATG 2 cut(s) 178, 736
HinfI GANTC 6 cut(s) 113, 392, 557, 820, 858, 962
HpaII CCGG 2 cut(s) 539, 605
HphI GGTGA 2 cut(s) 82, 533
Hpy188I TCNGA 8 cut(s) 57, 192, 331, 343, 397, 882, 990, 1060
Hpy188III TCNNGA 8 cut(s) 238, 353, 376, 554, 617, 647, 969, 1068
Hpy99I CGWCG 1 cut(s) 854
HpyAV CCTTC 3 cut(s) 313, 488, 740
HpyCH4III ACNGT 2 cut(s) 781, 1087
HpyCH4V TGCA 3 cut(s) 568, 801, 877
HpyF10VI GCNNNNNNNGC 3 cut(s) 267, 495, 811
HpyF3I CTNAG 6 cut(s) 54, 189, 219, 250, 278, 342
Hsp92II CATG 2 cut(s) 178, 736
Ksp22I TGATCA 1 cut(s) 828
Kzo9I GATC 5 cut(s) 246, 448, 772, 828, 1070
LmnI GCTCC 4 cut(s) 50, 106, 154, 897
Lsp1109I GCAGC 1 cut(s) 823
LweI GCATC 2 cut(s) 886, 1073
MabI ACCWGGT 1 cut(s) 592
MaeI CTAG 2 cut(s) 729, 909
MaeIII GTNAC 1 cut(s) 911
MalI GATC 5 cut(s) 248, 450, 774, 830, 1072
MboI GATC 5 cut(s) 246, 448, 772, 828, 1070
MboII GAAGA 8 cut(s) 25, 52, 256, 452, 536, 1019, 1106, 1151
MflI RGATCY 3 cut(s) 246, 448, 1070
MhlI GDGCHC 4 cut(s) 55, 190, 263, 894
MluCI AATT 5 cut(s) 8, 160, 310, 529, 719
MlyI GAGTC 2 cut(s) 566, 867
MmeI TCCRAC 3 cut(s) 128, 919, 1101
MroXI GAANNNNTTC 1 cut(s) 323
MseI TTAA 3 cut(s) 195, 210, 371
MslI CAYNNNNRTG 1 cut(s) 882
MspI CCGG 2 cut(s) 539, 605
MspR9I CCNGG 2 cut(s) 540, 594
MvaI CCWGG 1 cut(s) 594
MwoI GCNNNNNNNGC 3 cut(s) 267, 495, 811
NciI CCSGG 1 cut(s) 540
NdeII GATC 5 cut(s) 246, 448, 772, 828, 1070
NlaIII CATG 2 cut(s) 178, 736
NlaIV GGNNCC 3 cut(s) 156, 609, 1072
NspI RCATGY 1 cut(s) 736
PaeR7I CTCGAG 1 cut(s) 516
PdmI GAANNNNTTC 1 cut(s) 323
PfeI GAWTC 4 cut(s) 113, 392, 820, 962
PkrI GCNGC 1 cut(s) 813
PleI GAGTC 2 cut(s) 565, 866
PpsI GAGTC 2 cut(s) 565, 866
Psp124BI GAGCTC 2 cut(s) 55, 894
Psp6I CCWGG 1 cut(s) 592
PspGI CCWGG 1 cut(s) 592
PspN4I GGNNCC 3 cut(s) 156, 609, 1072
PspPI GGNCC 1 cut(s) 986
PspXI VCTCGAGB 1 cut(s) 516
PsuI RGATCY 3 cut(s) 246, 448, 1070
RsaI GTAC 1 cut(s) 841
RsaNI GTAC 1 cut(s) 840
RseI CAYNNNNRTG 1 cut(s) 882
SacI GAGCTC 2 cut(s) 55, 894
SaqAI TTAA 3 cut(s) 195, 210, 371
SatI GCNGC 1 cut(s) 812
Sau3AI GATC 5 cut(s) 246, 448, 772, 828, 1070
Sau96I GGNCC 1 cut(s) 986
SchI GAGTC 2 cut(s) 566, 867
ScrFI CCNGG 2 cut(s) 540, 594
SduI GDGCHC 4 cut(s) 55, 190, 263, 894
SexAI ACCWGGT 1 cut(s) 592
SfaNI GCATC 2 cut(s) 886, 1073
Sfr274I CTCGAG 1 cut(s) 516
SinI GGWCC 1 cut(s) 986
SlaI CTCGAG 1 cut(s) 516
SmiMI CAYNNNNRTG 1 cut(s) 882
SmlI CTYRAG 2 cut(s) 284, 516
SmoI CTYRAG 2 cut(s) 284, 516
Sse9I AATT 5 cut(s) 8, 160, 310, 529, 719
SspMI CTAG 2 cut(s) 729, 909
SstI GAGCTC 2 cut(s) 55, 894
StyD4I CCNGG 2 cut(s) 538, 592
StyI CCWWGG 1 cut(s) 108
TaaI ACNGT 2 cut(s) 781, 1087
TaqI TCGA 5 cut(s) 517, 671, 717, 867, 1130
TasI AATT 5 cut(s) 8, 160, 310, 529, 719
TatI WGTACW 1 cut(s) 839
TfiI GAWTC 4 cut(s) 113, 392, 820, 962
Tru1I TTAA 3 cut(s) 195, 210, 371
Tru9I TTAA 3 cut(s) 195, 210, 371
TscAI CASTG 2 cut(s) 223, 588
TseI GCWGC 1 cut(s) 811
TspDTI ATGAA 5 cut(s) 144, 185, 323, 942, 1152
TspGWI ACGGA 2 cut(s) 396, 721
TspRI CASTG 2 cut(s) 223, 588
VpaK11BI GGWCC 1 cut(s) 986
XagI CCTNNNNNAGG 1 cut(s) 866
XapI RAATTY 1 cut(s) 529
XceI RCATGY 1 cut(s) 736
XhoI CTCGAG 1 cut(s) 516
XmnI GAANNNNTTC 1 cut(s) 323
XspI CTAG 2 cut(s) 729, 909
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.