Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005266.1

Orthogroup ID

OG0011482

Physical Location & Seq

Genomic Coordinates Forward (+)

14472 .. 18006

Gene Structure 3535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005266.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1521 bp

atgccagcgttcctgttgacgtttctcttgggcttgatcgcgtctgcgtctgctttgggctttgccttcgccttcgattttggtgaggcggcggcgaccttgacggcggttccaacagtggatgtggatgacttggccggcagtgggaagaagaacggggaacttggtggtggtctggaagagagagggggaggttttgactatccccatctctctctcgctctctctctctccagagaaggatcaacgcttccaccccatccccgtgtttcgtcgccggagccccgcagggttgtgagttttttttgtgctggtggagtcatggacaagtttaatttaggtcagttgggtaacttgggcgagaaattggtgacgagtggagctcaaatgggtcggatggttagtggcaaagtgaaggagattctggctaccccgactccggaatcgaggatgattgatgaggccaccttggagacaatggaggagcccaattggggcttgaatttgaggatatgtgctatgattaacagtgaggagtttagtgggtcggaagttgtgagggttataaagaggaaggtttcggggaagagtgttgtcacacagaggctcagtcttgacttgttggaggcgtgtactatgaattgcgagaaggtgttctcggaggttgcgtcggagaaggtgttggatgacatgcttaggatgattgataatccgcagactgatagcgaaaatagacgcagggctatgcagttgataagggcttggggagagtctcaggatcttgcatatctacctgtgtttcgtcagacttacatgatcttgagagaaaaaggagcacatccagtagcacaaggagggacttcgccctcgttgcaatctaccttggaatcatacatggaagagcctctgcctcctccggaaagataccctgtacctgacacaggatttcatgatgcaagtgaccgtgaatttcgctataactacctgtcagttgagggaaaaaaagaatatcttgttgtaactcgcaatagcctggagctgctgtctagtattttgaatactgaaacagatccaaaacctttgaaggaagaactaaccatgaacatgctggaaaagtgcaaggagtctcagcctgttattcagaggattatagaaaccactactgatgatgaagggatgctctttgaggcactatttcttcatgaagaacttcaacaagttatttccaagtatcaggagttggaagcttctcaaaactctggaggccaagaactcgaaaacccggatgccaccaggcctgaggggtcagaagcggctcaaaatggagaactaccaataagctctaaaccctctgagtgtgaggatttagataacagccaaaaacatggtggtaaactgcctgaatattccaatgattctgaagttggcccatcagctcctctgggaattcatagtgaaaccaaaatagcagattctgtacaagaaggcactccgtctatcagtgaaaaagttggccattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0032182 GO:0043130 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GAT VHS

Protein Analysis

506

Amino Acids

55.38

Weight (kDa)

4.72

Isoelectric Point (pI)

47.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06210 AT1G06210
fragaria_vesca	FvH4_2g21370 FvH4_2g21370
malus_domestica	MD05G1196400.v1.1
prunus_persica	Prupe.8G222800_v2.0.a1
pyrus_communis	pycom05g18340
rosa_chinensis	RchiOBHm_Chr6g0287961
rosa_laevigata	RLG00000012451
rosa_multiflora	Rmu_sc0005266.1_g000005 Rmu_sc0005309.1_g000002
rosa_roxburghii	Rroxscaffold_7G00180630 Rroxscaffold_7G00180910
rosa_rugosa	Rorug06G0193700
rosa_samantha	Rh6AG303000 Rh6BG309200 Rh6CG300500 Rh6CG316900 Rh6DG301700
rosa_wichuraiana	Rw6G026200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	566
AccII	CGCG	1 cut(s)	41
AccIII	TCCGGA	2 cut(s)	439, 916
AciI	CCGC	6 cut(s)	89, 92, 107, 286, 713, 1313
AclWI	GGATC	3 cut(s)	250, 786, 1064
AcoI	YGGCCR	2 cut(s)	135, 1513
AcsI	RAATTY	3 cut(s)	502, 968, 1446
AcuI	CTGAAG	1 cut(s)	1440
AfaI	GTAC	3 cut(s)	634, 933, 1479
AfiI	CCNNNNNNNGG	4 cut(s)	144, 439, 494, 941
AgsI	TTSAA	4 cut(s)	502, 1057, 1084, 1214
AjnI	CCWGG	2 cut(s)	1032, 1292
AluBI	AGCT	5 cut(s)	383, 1039, 1247, 1341, 1436
AluI	AGCT	5 cut(s)	383, 1039, 1247, 1341, 1436
Alw21I	GWGCWC	2 cut(s)	385, 838
Alw26I	GTCTC	3 cut(s)	467, 777, 1131
AlwI	GGATC	3 cut(s)	250, 786, 1064
AlwNI	CAGNNNCTG	1 cut(s)	1475
Aor13HI	TCCGGA	2 cut(s)	439, 916
AoxI	GGCC	6 cut(s)	135, 462, 1264, 1295, 1426, 1513
ApeKI	GCWGC	1 cut(s)	1039
ApoI	RAATTY	3 cut(s)	502, 968, 1446
Asp700I	GAANNNNTTC	2 cut(s)	653, 1209
AspS9I	GGNCC	1 cut(s)	1427
AsuC2I	CCSGG	1 cut(s)	1283
AsuHPI	GGTGA	2 cut(s)	95, 382
AxyI	CCTNAGG	1 cut(s)	1299
BalI	TGGCCA	1 cut(s)	1515
BanII	GRGCYC	3 cut(s)	285, 385, 489
Bbv12I	GWGCWC	2 cut(s)	385, 838
BbvI	GCAGC	1 cut(s)	1026
BccI	CCATC	4 cut(s)	216, 267, 391, 1438
BceAI	ACGGC	1 cut(s)	120
BciT130I	CCWGG	2 cut(s)	1034, 1294
BcnI	CCSGG	1 cut(s)	1283
BcoDI	GTCTC	3 cut(s)	467, 777, 1131
BfaI	CTAG	1 cut(s)	1047
BisI	GCNGC	4 cut(s)	90, 93, 1040, 1314
BlsI	GCNGC	4 cut(s)	91, 94, 1041, 1315
Bme1390I	CCNGG	3 cut(s)	1034, 1283, 1294
BmgT120I	GGNCC	1 cut(s)	1427
BmiI	GGNNCC	3 cut(s)	111, 282, 486
BmrFI	CCNGG	3 cut(s)	1034, 1283, 1294
BmsI	GCATC	3 cut(s)	943, 1167, 1276
BplI	GAGNNNNNCTC	2 cut(s)	367, 399
BpmI	CTGGAG	3 cut(s)	217, 1055, 1281
Bpu10I	CCTNAGC	1 cut(s)	695
BpuEI	CTTGAG	1 cut(s)	841
BpuMI	CCSGG	1 cut(s)	1283
BsaJI	CCNNGG	2 cut(s)	468, 882
BsaWI	WCCGGW	2 cut(s)	439, 916
BsaXI	ACNNNNNCTCC	8 cut(s)	421, 451, 653, 665, 683, 695, 1028, 1058
Bsc4I	CCNNNNNNNGG	4 cut(s)	144, 439, 494, 941
Bse118I	RCCGGY	1 cut(s)	137
Bse1I	ACTGG	1 cut(s)	842
Bse21I	CCTNAGG	1 cut(s)	1299
BseAI	TCCGGA	2 cut(s)	439, 916
BseBI	CCWGG	2 cut(s)	1034, 1294
BseDI	CCNNGG	2 cut(s)	468, 882
BseLI	CCNNNNNNNGG	4 cut(s)	144, 439, 494, 941
BseMII	CTCAG	5 cut(s)	622, 788, 1142, 1290, 1344
BseNI	ACTGG	1 cut(s)	842
BseRI	GAGGAG	4 cut(s)	497, 548, 903, 1428
BseXI	GCAGC	1 cut(s)	1026
Bsh1236I	CGCG	1 cut(s)	41
BshFI	GGCC	6 cut(s)	137, 464, 1266, 1297, 1428, 1515
BsiHKAI	GWGCWC	2 cut(s)	385, 838
BsiSI	CCGG	5 cut(s)	138, 278, 440, 917, 1283
BslFI	GGGAC	1 cut(s)	871
BslI	CCNNNNNNNGG	4 cut(s)	144, 439, 494, 941
BsmAI	GTCTC	3 cut(s)	467, 777, 1131
BsmFI	GGGAC	1 cut(s)	871
BsnI	GGCC	6 cut(s)	137, 464, 1266, 1297, 1428, 1515
Bsp1286I	GDGCHC	4 cut(s)	285, 385, 489, 838
Bsp13I	TCCGGA	2 cut(s)	439, 916
Bsp1407I	TGTACA	1 cut(s)	1477
Bsp143I	GATC	5 cut(s)	36, 242, 778, 816, 1069
BspACI	CCGC	6 cut(s)	89, 92, 107, 286, 713, 1313
BspANI	GGCC	6 cut(s)	137, 464, 1266, 1297, 1428, 1515
BspCNI	CTCAG	5 cut(s)	621, 787, 1141, 1291, 1345
BspEI	TCCGGA	2 cut(s)	439, 916
BspFNI	CGCG	1 cut(s)	41
BspHI	TCATGA	2 cut(s)	949, 1201
BspLI	GGNNCC	3 cut(s)	111, 282, 486
BspPI	GGATC	3 cut(s)	250, 786, 1064
BspQI	GCTCTTC	1 cut(s)	894
BsrFI	RCCGGY	1 cut(s)	137
BsrGI	TGTACA	1 cut(s)	1477
BsrI	ACTGG	1 cut(s)	842
BssAI	RCCGGY	1 cut(s)	137
BssECI	CCNNGG	2 cut(s)	468, 882
BssMI	GATC	5 cut(s)	36, 242, 778, 816, 1069
BssT1I	CCWWGG	2 cut(s)	468, 882
Bst2UI	CCWGG	2 cut(s)	1034, 1294
Bst4CI	ACNGT	3 cut(s)	118, 530, 965
Bst6I	CTCTTC	3 cut(s)	174, 581, 894
BstAUI	TGTACA	1 cut(s)	1477
BstC8I	GCNNGC	2 cut(s)	6, 139
BstDEI	CTNAG	6 cut(s)	608, 695, 774, 1128, 1299, 1353
BstENI	CCTNNNNNAGG	1 cut(s)	939
BstFNI	CGCG	1 cut(s)	41
BstKTI	GATC	5 cut(s)	39, 245, 781, 819, 1072
BstMAI	GTCTC	3 cut(s)	467, 777, 1131
BstMBI	GATC	5 cut(s)	36, 242, 778, 816, 1069
BstMWI	GCNNNNNNNGC	1 cut(s)	871
BstNI	CCWGG	2 cut(s)	1034, 1294
BstNSI	RCATGY	2 cut(s)	694, 1108
BstSCI	CCNGG	3 cut(s)	1032, 1281, 1292
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	1 cut(s)	1026
BstX2I	RGATCY	2 cut(s)	778, 1069
BstXI	CCANNNNNNTGG	1 cut(s)	1385
BstYI	RGATCY	2 cut(s)	778, 1069
Bsu36I	CCTNAGG	1 cut(s)	1299
BsuRI	GGCC	6 cut(s)	137, 464, 1266, 1297, 1428, 1515
BtsI	GCAGTG	1 cut(s)	148
BtsIMutI	CAGTG	4 cut(s)	123, 148, 535, 1507
Cac8I	GCNNGC	2 cut(s)	6, 139
CaiI	CAGNNNCTG	1 cut(s)	1475
CciI	TCATGA	2 cut(s)	949, 1201
Cfr10I	RCCGGY	1 cut(s)	137
Cfr13I	GGNCC	1 cut(s)	1427
CseI	GACGC	4 cut(s)	30, 36, 657, 744
Csp6I	GTAC	3 cut(s)	633, 932, 1478
CviAII	CATG	9 cut(s)	322, 691, 814, 895, 950, 1099, 1105, 1202, 1385
CviQI	GTAC	3 cut(s)	633, 932, 1478
DdeI	CTNAG	6 cut(s)	608, 695, 774, 1128, 1299, 1353
DpnI	GATC	5 cut(s)	38, 244, 780, 818, 1071
DpnII	GATC	5 cut(s)	36, 242, 778, 816, 1069
EaeI	YGGCCR	2 cut(s)	135, 1513
Eam1104I	CTCTTC	3 cut(s)	174, 581, 894
EarI	CTCTTC	3 cut(s)	174, 581, 894
Ecl136II	GAGCTC	1 cut(s)	383
Eco130I	CCWWGG	2 cut(s)	468, 882
Eco147I	AGGCCT	1 cut(s)	1297
Eco24I	GRGCYC	3 cut(s)	285, 385, 489
Eco53kI	GAGCTC	1 cut(s)	383
Eco57I	CTGAAG	1 cut(s)	1440
Eco81I	CCTNAGG	1 cut(s)	1299
EcoICRI	GAGCTC	1 cut(s)	383
EcoNI	CCTNNNNNAGG	1 cut(s)	939
EcoRI	GAATTC	1 cut(s)	1446
EcoRII	CCWGG	2 cut(s)	1032, 1292
EcoT14I	CCWWGG	2 cut(s)	468, 882
EcoT38I	GRGCYC	3 cut(s)	285, 385, 489
ErhI	CCWWGG	2 cut(s)	468, 882
FaeI	CATG	9 cut(s)	325, 694, 817, 898, 953, 1102, 1108, 1205, 1388
FalI	AAGNNNNNCTT	2 cut(s)	996, 1028
FaqI	GGGAC	1 cut(s)	871
FatI	CATG	9 cut(s)	321, 690, 813, 894, 949, 1098, 1104, 1201, 1384
FauI	CCCGC	1 cut(s)	293
Fnu4HI	GCNGC	4 cut(s)	90, 93, 1040, 1314
FriOI	GRGCYC	3 cut(s)	285, 385, 489
Fsp4HI	GCNGC	4 cut(s)	90, 93, 1040, 1314
FspBI	CTAG	1 cut(s)	1047
GluI	GCNGC	4 cut(s)	90, 93, 1040, 1314
GsuI	CTGGAG	3 cut(s)	217, 1055, 1281
HaeIII	GGCC	6 cut(s)	137, 464, 1266, 1297, 1428, 1515
HapII	CCGG	5 cut(s)	138, 278, 440, 917, 1283
HgaI	GACGC	4 cut(s)	30, 36, 657, 744
Hin1II	CATG	9 cut(s)	325, 694, 817, 898, 953, 1102, 1108, 1205, 1388
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HindIII	AAGCTT	1 cut(s)	1245
HinfI	GANTC	9 cut(s)	318, 421, 436, 443, 770, 887, 1124, 1415, 1472
HpaII	CCGG	5 cut(s)	138, 278, 440, 917, 1283
HphI	GGTGA	2 cut(s)	95, 382
Hpy166II	GTNNAC	3 cut(s)	18, 633, 1394
Hpy188I	TCNGA	9 cut(s)	396, 550, 661, 673, 807, 1143, 1309, 1354, 1420
Hpy8I	GTNNAC	3 cut(s)	18, 633, 1394
Hpy99I	CGWCG	2 cut(s)	277, 673
HpyCH4III	ACNGT	3 cut(s)	118, 530, 965
HpyCH4IV	ACGT	1 cut(s)	20
HpyCH4V	TGCA	5 cut(s)	748, 785, 874, 956, 1119
HpyF10VI	GCNNNNNNNGC	1 cut(s)	871
HpyF3I	CTNAG	6 cut(s)	608, 695, 774, 1128, 1299, 1353
HpySE526I	ACGT	1 cut(s)	20
Hsp92II	CATG	9 cut(s)	325, 694, 817, 898, 953, 1102, 1108, 1205, 1388
Kpn2I	TCCGGA	2 cut(s)	439, 916
KroI	GCCGGC	1 cut(s)	137
KroNI	GCCGGC	1 cut(s)	139
Kzo9I	GATC	5 cut(s)	36, 242, 778, 816, 1069
LguI	GCTCTTC	1 cut(s)	894
LmnI	GCTCC	6 cut(s)	280, 380, 484, 833, 1036, 1441
Lsp1109I	GCAGC	1 cut(s)	1026
LweI	GCATC	3 cut(s)	943, 1167, 1276
MaeI	CTAG	1 cut(s)	1047
MaeII	ACGT	1 cut(s)	20
MaeIII	GTNAC	5 cut(s)	350, 370, 595, 959, 1018
MalI	GATC	5 cut(s)	38, 244, 780, 818, 1071
MboI	GATC	5 cut(s)	36, 242, 778, 816, 1069
MboII	GAAGA	8 cut(s)	160, 163, 191, 598, 911, 1100, 1190, 1217
MfeI	CAATTG	1 cut(s)	490
MflI	RGATCY	2 cut(s)	778, 1069
MhlI	GDGCHC	4 cut(s)	285, 385, 489, 838
MlsI	TGGCCA	1 cut(s)	1515
MluCI	AATT	7 cut(s)	334, 365, 490, 502, 640, 968, 1446
MluNI	TGGCCA	1 cut(s)	1515
MlyI	GAGTC	4 cut(s)	327, 430, 779, 1133
MmeI	TCCRAC	7 cut(s)	137, 374, 528, 603, 651, 663, 1221
Mox20I	TGGCCA	1 cut(s)	1515
MroI	TCCGGA	2 cut(s)	439, 916
MroNI	GCCGGC	1 cut(s)	137
MroXI	GAANNNNTTC	2 cut(s)	653, 1209
MscI	TGGCCA	1 cut(s)	1515
MseI	TTAA	2 cut(s)	333, 525
MslI	CAYNNNNRTG	2 cut(s)	264, 1103
Msp20I	TGGCCA	1 cut(s)	1515
MspI	CCGG	5 cut(s)	138, 278, 440, 917, 1283
MspR9I	CCNGG	3 cut(s)	1034, 1283, 1294
MunI	CAATTG	1 cut(s)	490
MvaI	CCWGG	2 cut(s)	1034, 1294
MvnI	CGCG	1 cut(s)	41
MwoI	GCNNNNNNNGC	1 cut(s)	871
NaeI	GCCGGC	1 cut(s)	139
NciI	CCSGG	1 cut(s)	1283
NdeII	GATC	5 cut(s)	36, 242, 778, 816, 1069
NgoMIV	GCCGGC	1 cut(s)	137
NlaIII	CATG	9 cut(s)	325, 694, 817, 898, 953, 1102, 1108, 1205, 1388
NlaIV	GGNNCC	3 cut(s)	111, 282, 486
NmuCI	GTSAC	3 cut(s)	370, 595, 959
NspI	RCATGY	2 cut(s)	694, 1108
PagI	TCATGA	2 cut(s)	949, 1201
PceI	AGGCCT	1 cut(s)	1297
PciSI	GCTCTTC	1 cut(s)	894
PcsI	WCGNNNNNNNCGW	1 cut(s)	665
PdiI	GCCGGC	1 cut(s)	139
PdmI	GAANNNNTTC	2 cut(s)	653, 1209
PfeI	GAWTC	5 cut(s)	421, 443, 887, 1415, 1472
PkrI	GCNGC	4 cut(s)	91, 94, 1041, 1315
PleI	GAGTC	4 cut(s)	326, 430, 778, 1132
PpsI	GAGTC	4 cut(s)	326, 430, 778, 1132
PsiI	TTATAA	1 cut(s)	566
Psp124BI	GAGCTC	1 cut(s)	385
Psp6I	CCWGG	2 cut(s)	1032, 1292
PspGI	CCWGG	2 cut(s)	1032, 1292
PspN4I	GGNNCC	3 cut(s)	111, 282, 486
PspPI	GGNCC	1 cut(s)	1427
PstNI	CAGNNNCTG	1 cut(s)	1475
PsuI	RGATCY	2 cut(s)	778, 1069
RsaI	GTAC	3 cut(s)	634, 933, 1479
RsaNI	GTAC	3 cut(s)	633, 932, 1478
RseI	CAYNNNNRTG	2 cut(s)	264, 1103
SacI	GAGCTC	1 cut(s)	385
SapI	GCTCTTC	1 cut(s)	894
SaqAI	TTAA	2 cut(s)	333, 525
SatI	GCNGC	4 cut(s)	90, 93, 1040, 1314
Sau3AI	GATC	5 cut(s)	36, 242, 778, 816, 1069
Sau96I	GGNCC	1 cut(s)	1427
SchI	GAGTC	4 cut(s)	327, 430, 779, 1133
ScrFI	CCNGG	3 cut(s)	1034, 1283, 1294
SduI	GDGCHC	4 cut(s)	285, 385, 489, 838
SfaNI	GCATC	3 cut(s)	943, 1167, 1276
SmiMI	CAYNNNNRTG	2 cut(s)	264, 1103
SmlI	CTYRAG	1 cut(s)	820
SmoI	CTYRAG	1 cut(s)	820
Sse9I	AATT	7 cut(s)	334, 365, 490, 502, 640, 968, 1446
SseBI	AGGCCT	1 cut(s)	1297
SsiI	CCGC	6 cut(s)	89, 92, 107, 286, 713, 1313
SspI	AATATT	1 cut(s)	1406
SspMI	CTAG	1 cut(s)	1047
SstI	GAGCTC	1 cut(s)	385
StuI	AGGCCT	1 cut(s)	1297
StyD4I	CCNGG	3 cut(s)	1032, 1281, 1292
StyI	CCWWGG	2 cut(s)	468, 882
TaaI	ACNGT	3 cut(s)	118, 530, 965
TaiI	ACGT	1 cut(s)	23
TaqI	TCGA	3 cut(s)	75, 446, 1275
TasI	AATT	7 cut(s)	334, 365, 490, 502, 640, 968, 1446
TatI	WGTACW	2 cut(s)	632, 1477
TauI	GCSGC	3 cut(s)	92, 95, 1316
TfiI	GAWTC	5 cut(s)	421, 443, 887, 1415, 1472
Tru1I	TTAA	2 cut(s)	333, 525
Tru9I	TTAA	2 cut(s)	333, 525
TscAI	CASTG	4 cut(s)	123, 148, 535, 1507
TseFI	GTSAC	3 cut(s)	370, 595, 959
TseI	GCWGC	1 cut(s)	1039
Tsp45I	GTSAC	3 cut(s)	370, 595, 959
TspDTI	ATGAA	7 cut(s)	653, 938, 1115, 1185, 1190, 1218, 1439
TspGWI	ACGGA	1 cut(s)	1482
TspRI	CASTG	4 cut(s)	123, 148, 535, 1507
XagI	CCTNNNNNAGG	1 cut(s)	939
XapI	RAATTY	3 cut(s)	502, 968, 1446
XceI	RCATGY	2 cut(s)	694, 1108
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1105, 1385
XmnI	GAANNNNTTC	2 cut(s)	653, 1209
XspI	CTAG	1 cut(s)	1047

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.