FvH4_2g21370

VHS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0011482
Physical Location & Seq
Forward (+)
17770299 .. 17773420
3122 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g21370.t1

Sequence Viewer

Length: 1206 bp
ATGGACAAGTTCAACTTAACTCAGCTGGGTAACTTGGGTGAGAAACTGGTGACGAGTGGAGCTCAGATGGGTAGGATGGTGAGTGGAAAAGTGAAGGAGATTCTGCAGACGCCGACGCCGGAATCGAGGATGATCGACGAGGCGACGTTGGAGACGATGGAGGAGCCGAATTGGGGGATGAACTTGAGGATATGTGCAATGATTAATAGTGAGGAGTTCAGCGGGTTTGAAGTTGTGAGGGTTATTAAGAGGAAGATTTCGGGGAAGAGTGTGGTGACGCAGAGGCTGAGTCTTGACTTGTTGGAGGCGATTGCTATGAATTGTGAGAAGGTGTTTTCGGAGATTGCGTCCGAGAAGGTGTTGGAGGAGATGGTTAGGATGATTGAGAATCCGCAGACGGATAATGAGAATAGGAGGAGGGCTATGCAGTTGATTAGGGCGTGGGGAGAGTCTCAGGATCTTGCTTATCTACCCGTGTTTCGTCAGACTTACATGACATTGAGAGAAAGAGGAGCACGTCCAGTGGCACCAGAAGGGACTTCGCCCTCGTTGCAATCTACCTTGGAATCATACATGGAAGAGCCTATGCCTCCCCCGGAAAGATACCCTGTACCAGTCACAGGATTTCATGATGCAAGTGACCGTGAATTTCGCTATAACTACCTATCAGTCGAGGAAAAAAAAGAATGTCTTGTTGTAGCTCGCAATAGCCTGGAGTTGCTGTCTAGTATTTTGAATAGTGAAACAGATCCGAAACCTTTGAAGGAAGAACTAACGATGAACATGCTGGAAAAGTGCAAGGAGTCTCAGCCTGTTATTCAGAGGATTATAGAAACCACTACTGATGATGAAAGTATGCTCTTTGAGGCTCTATATCTTCATGAAGAACTTCAACAAGTTATTTCCAAGTATGAGGAGTTGGAAGCTTCCCAAAACTCTGGAGGCCAACAGCTTGAAAATCCGGATGCCACCAGACCTGAGGTGCCAGAAGTGCCGGCTCAAAATCATGGAGAACTGCCAGGAAACTCAAACCCCCCTGAGCGTGAGGATTTAGATGACATCCAAAACCGTGGCGGTATACTGCCTGAATATTCCATTTATTCTGAAGTCATCCCATCTGCGCCTGTGGGAACTCCTAGTGAAACCAAAATAGCGGATTCTGTACAAGACGGCACTTCGTCTAGCAGTGAAAAAGTTGGTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0032182 GO:0043130 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GAT VHS

Protein Analysis

402

Amino Acids

45.12

Weight (kDa)

4.64

Isoelectric Point (pI)

55.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VHS PF00790 42 - 151 1e-19 VHS domain
GAT PF03127 235 - 308 1.6e-16 GAT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011482)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06210 AT1G06210
fragaria_vesca FvH4_2g21370 FvH4_2g21370
malus_domestica MD05G1196400.v1.1
prunus_persica Prupe.8G222800_v2.0.a1
pyrus_communis pycom05g18340
rosa_chinensis RchiOBHm_Chr6g0287961
rosa_laevigata RLG00000012451
rosa_multiflora Rmu_sc0005266.1_g000005 Rmu_sc0005309.1_g000002
rosa_roxburghii Rroxscaffold_7G00180630 Rroxscaffold_7G00180910
rosa_rugosa Rorug06G0193700
rosa_samantha Rh6AG303000 Rh6BG309200 Rh6CG300500 Rh6CG316900 Rh6DG301700
rosa_wichuraiana Rw6G026200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 526, 982
AccI GTMKAC 1 cut(s) 1078
AccIII TCCGGA 1 cut(s) 961
AciI CCGC 4 cut(s) 222, 392, 1074, 1154
AclWI GGATC 2 cut(s) 465, 743
AcsI RAATTY 1 cut(s) 647
AcuI CTGAAG 1 cut(s) 1125
AcyI GRCGYC 2 cut(s) 110, 116
AfaI GTAC 2 cut(s) 612, 1164
AfiI CCNNNNNNNGG 2 cut(s) 173, 620
AgsI TTSAA 6 cut(s) 13, 230, 736, 763, 893, 956
AjiI CACGTC 1 cut(s) 518
AjnI CCWGG 2 cut(s) 711, 1018
AluBI AGCT 5 cut(s) 25, 62, 701, 926, 952
AluI AGCT 5 cut(s) 25, 62, 701, 926, 952
Alw21I GWGCWC 2 cut(s) 64, 517
Alw26I GTCTC 3 cut(s) 146, 456, 810
AlwI GGATC 2 cut(s) 465, 743
AlwNI CAGNNNCTG 1 cut(s) 286
Aor13HI TCCGGA 1 cut(s) 961
AoxI GGCC 1 cut(s) 943
ApoI RAATTY 1 cut(s) 647
AseI ATTAAT 1 cut(s) 204
Asp700I GAANNNNTTC 1 cut(s) 888
AspLEI GCGC 1 cut(s) 1123
AsuC2I CCSGG 1 cut(s) 596
AsuHPI GGTGA 4 cut(s) 50, 61, 91, 286
AxyI CCTNAGG 1 cut(s) 978
BanI GGYRCC 2 cut(s) 526, 982
BanII GRGCYC 1 cut(s) 64
Bbv12I GWGCWC 2 cut(s) 64, 517
BccI CCATC 5 cut(s) 61, 70, 151, 364, 1123
BceAI ACGGC 1 cut(s) 1186
BcgI CGANNNNNNTGC 2 cut(s) 766, 800
BciT130I CCWGG 2 cut(s) 713, 1020
BcnI CCSGG 1 cut(s) 596
BcoDI GTCTC 3 cut(s) 146, 456, 810
BfaI CTAG 3 cut(s) 726, 1137, 1182
BfmI CTRYAG 1 cut(s) 104
Bme1390I CCNGG 3 cut(s) 596, 713, 1020
BmgBI CACGTC 1 cut(s) 518
BmiI GGNNCC 3 cut(s) 165, 528, 984
BmrFI CCNGG 3 cut(s) 596, 713, 1020
BmsI GCATC 2 cut(s) 622, 955
BplI GAGNNNNNCTC 2 cut(s) 46, 78
BpmI CTGGAG 2 cut(s) 734, 960
Bpu10I CCTNAGC 1 cut(s) 1038
BpuEI CTTGAG 1 cut(s) 205
BpuMI CCSGG 1 cut(s) 596
BsaHI GRCGYC 2 cut(s) 110, 116
BsaJI CCNNGG 3 cut(s) 561, 594, 1069
BsaWI WCCGGW 1 cut(s) 961
BsaXI ACNNNNNCTCC 4 cut(s) 332, 362, 707, 737
Bsc4I CCNNNNNNNGG 2 cut(s) 173, 620
Bse118I RCCGGY 1 cut(s) 994
Bse1I ACTGG 3 cut(s) 51, 521, 614
Bse21I CCTNAGG 1 cut(s) 978
Bse3DI GCAATG 1 cut(s) 204
BseAI TCCGGA 1 cut(s) 961
BseBI CCWGG 2 cut(s) 713, 1020
BseDI CCNNGG 3 cut(s) 561, 594, 1069
BseGI GGATG 7 cut(s) 81, 135, 183, 384, 970, 1059, 1110
BseLI CCNNNNNNNGG 2 cut(s) 173, 620
BseMI GCAATG 1 cut(s) 204
BseMII CTCAG 7 cut(s) 35, 77, 278, 467, 821, 969, 1029
BseNI ACTGG 3 cut(s) 51, 521, 614
BseRI GAGGAG 6 cut(s) 176, 227, 380, 430, 525, 929
BseYI CCCAGC 1 cut(s) 25
BshFI GGCC 1 cut(s) 945
BshNI GGYRCC 2 cut(s) 526, 982
BsiHKAI GWGCWC 2 cut(s) 64, 517
BsiSI CCGG 4 cut(s) 119, 596, 962, 995
BslFI GGGAC 1 cut(s) 550
BslI CCNNNNNNNGG 2 cut(s) 173, 620
BsmAI GTCTC 3 cut(s) 146, 456, 810
BsmBI CGTCTC 1 cut(s) 146
BsmFI GGGAC 1 cut(s) 550
BsnI GGCC 1 cut(s) 945
Bsp1286I GDGCHC 2 cut(s) 64, 517
Bsp13I TCCGGA 1 cut(s) 961
Bsp1407I TGTACA 1 cut(s) 1162
Bsp143I GATC 3 cut(s) 132, 457, 748
BspACI CCGC 4 cut(s) 222, 392, 1074, 1154
BspANI GGCC 1 cut(s) 945
BspCNI CTCAG 7 cut(s) 34, 76, 279, 466, 820, 970, 1030
BspEI TCCGGA 1 cut(s) 961
BspHI TCATGA 2 cut(s) 628, 880
BspLI GGNNCC 3 cut(s) 165, 528, 984
BspMAI CTGCAG 1 cut(s) 108
BspPI GGATC 2 cut(s) 465, 743
BspQI GCTCTTC 1 cut(s) 573
BspT107I GGYRCC 2 cut(s) 526, 982
BsrDI GCAATG 1 cut(s) 204
BsrFI RCCGGY 1 cut(s) 994
BsrGI TGTACA 1 cut(s) 1162
BsrI ACTGG 3 cut(s) 51, 521, 614
BssAI RCCGGY 1 cut(s) 994
BssECI CCNNGG 3 cut(s) 561, 594, 1069
BssMI GATC 3 cut(s) 132, 457, 748
BssNAI GTATAC 1 cut(s) 1079
BssNI GRCGYC 2 cut(s) 110, 116
BssT1I CCWWGG 1 cut(s) 561
Bst1107I GTATAC 1 cut(s) 1079
Bst2UI CCWGG 2 cut(s) 713, 1020
Bst4CI ACNGT 2 cut(s) 644, 1070
Bst6I CTCTTC 2 cut(s) 260, 573
BstACI GRCGYC 2 cut(s) 110, 116
BstAUI TGTACA 1 cut(s) 1162
BstC8I GCNNGC 2 cut(s) 703, 996
BstDEI CTNAG 7 cut(s) 21, 63, 287, 453, 807, 978, 1038
BstDSI CCRYGG 1 cut(s) 1069
BstF5I GGATG 7 cut(s) 81, 135, 183, 384, 970, 1059, 1110
BstHHI GCGC 1 cut(s) 1123
BstKTI GATC 3 cut(s) 135, 460, 751
BstMAI GTCTC 3 cut(s) 146, 456, 810
BstMBI GATC 3 cut(s) 132, 457, 748
BstMWI GCNNNNNNNGC 2 cut(s) 550, 991
BstNI CCWGG 2 cut(s) 713, 1020
BstNSI RCATGY 1 cut(s) 787
BstSCI CCNGG 3 cut(s) 594, 711, 1018
BstSFI CTRYAG 1 cut(s) 104
BstX2I RGATCY 2 cut(s) 457, 748
BstXI CCANNNNNNTGG 2 cut(s) 938, 1070
BstYI RGATCY 2 cut(s) 457, 748
BstZ17I GTATAC 1 cut(s) 1079
Bsu36I CCTNAGG 1 cut(s) 978
BsuRI GGCC 1 cut(s) 945
BtgI CCRYGG 1 cut(s) 1069
BtrI CACGTC 1 cut(s) 518
BtsCI GGATG 7 cut(s) 81, 135, 183, 384, 970, 1059, 1110
BtsI GCAGTG 1 cut(s) 1192
BtsIMutI CAGTG 2 cut(s) 528, 1192
Cac8I GCNNGC 2 cut(s) 703, 996
CaiI CAGNNNCTG 1 cut(s) 286
CciI TCATGA 2 cut(s) 628, 880
CfoI GCGC 1 cut(s) 1123
Cfr10I RCCGGY 1 cut(s) 994
CseI GACGC 4 cut(s) 118, 124, 286, 336
Csp6I GTAC 2 cut(s) 611, 1163
CviAII CATG 6 cut(s) 493, 574, 629, 784, 881, 1007
CviQI GTAC 2 cut(s) 611, 1163
DdeI CTNAG 7 cut(s) 21, 63, 287, 453, 807, 978, 1038
DpnI GATC 3 cut(s) 134, 459, 750
DpnII GATC 3 cut(s) 132, 457, 748
Eam1104I CTCTTC 2 cut(s) 260, 573
EarI CTCTTC 2 cut(s) 260, 573
Ecl136II GAGCTC 1 cut(s) 62
Eco130I CCWWGG 1 cut(s) 561
Eco24I GRGCYC 1 cut(s) 64
Eco53kI GAGCTC 1 cut(s) 62
Eco57I CTGAAG 1 cut(s) 1125
Eco81I CCTNAGG 1 cut(s) 978
EcoICRI GAGCTC 1 cut(s) 62
EcoRII CCWGG 2 cut(s) 711, 1018
EcoT14I CCWWGG 1 cut(s) 561
EcoT38I GRGCYC 1 cut(s) 64
ErhI CCWWGG 1 cut(s) 561
Esp3I CGTCTC 1 cut(s) 146
FaeI CATG 6 cut(s) 496, 577, 632, 787, 884, 1010
FalI AAGNNNNNCTT 3 cut(s) 31, 675, 707
FaqI GGGAC 1 cut(s) 550
FatI CATG 6 cut(s) 492, 573, 628, 783, 880, 1006
FauI CCCGC 1 cut(s) 215
FblI GTMKAC 1 cut(s) 1078
FokI GGATG 7 cut(s) 88, 142, 190, 391, 977, 1046, 1097
FriOI GRGCYC 1 cut(s) 64
FspBI CTAG 3 cut(s) 726, 1137, 1182
GlaI GCGC 1 cut(s) 1122
GsaI CCCAGC 1 cut(s) 29
GsuI CTGGAG 2 cut(s) 734, 960
HaeIII GGCC 1 cut(s) 945
HapII CCGG 4 cut(s) 119, 596, 962, 995
HgaI GACGC 4 cut(s) 118, 124, 286, 336
HhaI GCGC 1 cut(s) 1123
Hin1I GRCGYC 2 cut(s) 110, 116
Hin1II CATG 6 cut(s) 496, 577, 632, 787, 884, 1010
Hin6I GCGC 1 cut(s) 1121
HinP1I GCGC 1 cut(s) 1121
HindIII AAGCTT 1 cut(s) 924
HinfI GANTC 8 cut(s) 100, 122, 289, 388, 449, 566, 803, 1157
HpaII CCGG 4 cut(s) 119, 596, 962, 995
HphI GGTGA 4 cut(s) 50, 61, 91, 286
Hpy166II GTNNAC 1 cut(s) 1079
Hpy188I TCNGA 7 cut(s) 66, 340, 352, 486, 753, 822, 1105
Hpy188III TCNNGA 6 cut(s) 293, 455, 629, 881, 939, 962
Hpy8I GTNNAC 1 cut(s) 1079
Hpy99I CGWCG 3 cut(s) 118, 140, 148
HpyAV CCTTC 5 cut(s) 88, 322, 349, 527, 757
HpyCH4III ACNGT 2 cut(s) 644, 1070
HpyCH4IV ACGT 2 cut(s) 146, 517
HpyCH4V TGCA 6 cut(s) 106, 197, 427, 553, 635, 798
HpyF10VI GCNNNNNNNGC 2 cut(s) 550, 991
HpyF3I CTNAG 7 cut(s) 21, 63, 287, 453, 807, 978, 1038
HpySE526I ACGT 2 cut(s) 146, 517
Hsp92I GRCGYC 2 cut(s) 110, 116
Hsp92II CATG 6 cut(s) 496, 577, 632, 787, 884, 1010
HspAI GCGC 1 cut(s) 1121
Kpn2I TCCGGA 1 cut(s) 961
KroI GCCGGC 1 cut(s) 994
KroNI GCCGGC 1 cut(s) 996
Kzo9I GATC 3 cut(s) 132, 457, 748
LguI GCTCTTC 1 cut(s) 573
LmnI GCTCC 3 cut(s) 59, 163, 512
LweI GCATC 2 cut(s) 622, 955
MaeI CTAG 3 cut(s) 726, 1137, 1182
MaeII ACGT 2 cut(s) 146, 517
MaeIII GTNAC 5 cut(s) 29, 49, 274, 616, 638
MalI GATC 3 cut(s) 134, 459, 750
MboI GATC 3 cut(s) 132, 457, 748
MboII GAAGA 6 cut(s) 265, 277, 590, 779, 869, 896
MflI RGATCY 2 cut(s) 457, 748
MhlI GDGCHC 2 cut(s) 64, 517
MluCI AATT 3 cut(s) 169, 319, 647
MlyI GAGTC 3 cut(s) 298, 458, 812
MmeI TCCRAC 4 cut(s) 129, 282, 342, 900
MroI TCCGGA 1 cut(s) 961
MroNI GCCGGC 1 cut(s) 994
MroXI GAANNNNTTC 1 cut(s) 888
MseI TTAA 3 cut(s) 17, 204, 246
MspA1I CMGCKG 2 cut(s) 25, 222
MspI CCGG 4 cut(s) 119, 596, 962, 995
MspR9I CCNGG 3 cut(s) 596, 713, 1020
MvaI CCWGG 2 cut(s) 713, 1020
MwoI GCNNNNNNNGC 2 cut(s) 550, 991
NaeI GCCGGC 1 cut(s) 996
NciI CCSGG 1 cut(s) 596
NdeII GATC 3 cut(s) 132, 457, 748
NgoMIV GCCGGC 1 cut(s) 994
NlaIII CATG 6 cut(s) 496, 577, 632, 787, 884, 1010
NlaIV GGNNCC 3 cut(s) 165, 528, 984
NmuCI GTSAC 4 cut(s) 49, 274, 616, 638
NspI RCATGY 1 cut(s) 787
PagI TCATGA 2 cut(s) 628, 880
PciSI GCTCTTC 1 cut(s) 573
PcsI WCGNNNNNNNCGW 3 cut(s) 122, 152, 344
PdiI GCCGGC 1 cut(s) 996
PdmI GAANNNNTTC 1 cut(s) 888
PfeI GAWTC 5 cut(s) 100, 122, 388, 566, 1157
PleI GAGTC 3 cut(s) 297, 457, 811
PpsI GAGTC 3 cut(s) 297, 457, 811
PshBI ATTAAT 1 cut(s) 204
Psp124BI GAGCTC 1 cut(s) 64
Psp6I CCWGG 2 cut(s) 711, 1018
PspFI CCCAGC 1 cut(s) 25
PspGI CCWGG 2 cut(s) 711, 1018
PspN4I GGNNCC 3 cut(s) 165, 528, 984
PstI CTGCAG 1 cut(s) 108
PstNI CAGNNNCTG 1 cut(s) 286
PsuI RGATCY 2 cut(s) 457, 748
PvuII CAGCTG 1 cut(s) 25
RsaI GTAC 2 cut(s) 612, 1164
RsaNI GTAC 2 cut(s) 611, 1163
SacI GAGCTC 1 cut(s) 64
SapI GCTCTTC 1 cut(s) 573
SaqAI TTAA 3 cut(s) 17, 204, 246
Sau3AI GATC 3 cut(s) 132, 457, 748
SchI GAGTC 3 cut(s) 298, 458, 812
ScrFI CCNGG 3 cut(s) 596, 713, 1020
SduI GDGCHC 2 cut(s) 64, 517
SfaNI GCATC 2 cut(s) 622, 955
SfcI CTRYAG 1 cut(s) 104
SmlI CTYRAG 1 cut(s) 184
SmoI CTYRAG 1 cut(s) 184
Sse9I AATT 3 cut(s) 169, 319, 647
SsiI CCGC 4 cut(s) 222, 392, 1074, 1154
SspI AATATT 1 cut(s) 1091
SspMI CTAG 3 cut(s) 726, 1137, 1182
SstI GAGCTC 1 cut(s) 64
StyD4I CCNGG 3 cut(s) 594, 711, 1018
StyI CCWWGG 1 cut(s) 561
TaaI ACNGT 2 cut(s) 644, 1070
TaiI ACGT 2 cut(s) 149, 520
TaqI TCGA 3 cut(s) 125, 135, 672
TasI AATT 3 cut(s) 169, 319, 647
TatI WGTACW 1 cut(s) 1162
TfiI GAWTC 5 cut(s) 100, 122, 388, 566, 1157
Tru1I TTAA 3 cut(s) 17, 204, 246
Tru9I TTAA 3 cut(s) 17, 204, 246
TscAI CASTG 2 cut(s) 528, 1192
TseFI GTSAC 4 cut(s) 49, 274, 616, 638
Tsp45I GTSAC 4 cut(s) 49, 274, 616, 638
TspDTI ATGAA 7 cut(s) 194, 332, 617, 794, 864, 869, 897
TspGWI ACGGA 1 cut(s) 413
TspRI CASTG 2 cut(s) 528, 1192
VspI ATTAAT 1 cut(s) 204
XapI RAATTY 1 cut(s) 647
XceI RCATGY 1 cut(s) 787
XmiI GTMKAC 1 cut(s) 1078
XmnI GAANNNNTTC 1 cut(s) 888
XspI CTAG 3 cut(s) 726, 1137, 1182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.