Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0011482

Physical Location & Seq

Genomic Coordinates Forward (+)

20166906 .. 20169496

Gene Structure 2591 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G222800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGACAAGTTGAATCTAGCTCAATTGGGTGAGAGGTTAAAGATAGGTGGAGCTCAAATGGGTCGAATGGTTAGTGGTAAAGTGAAGGAAATTCTGCAAACCCCGACCCCTGAATCGAAGATGATCGATGAAGCCACATTGGAGACCTTGGAGGAGCCAAATTGGGGTATGAATTTGAGGATATGTGCAATGATCAATAGTGAAGAGTTTAGTGGGTCCGAAGTCGTTAGGGCCATAAAGAAGAAGATTTCGGGCAAGAATGTGGTGAGCCAGAGGTTGAGTCTTGACTTGTTGGAGACTTGTGCTATGAATTGCGAGAAGGTGTTCTCCGAGGTTGCGTCGGAGAAGGTGTTGGATGAGATGCTTAGAATGATTGAGAATCCACAAACAGATGCCGAAAATAGACAAAGGGCTATGCAATTGATTAGGGCTTGGGGAGAGTCTGAGGAGCTTGCATATCTACCTGTATTTCGTCAAACTTACATGAGCTTGAGAGAAAGAAGCACCAATCCTTTAGCACCAGAAGGGACTTCACCCTCGATGCAGTCTACCTTGGAATCATATGTTCACGAGCCGCTGTCTCCCCCTGAAAGATACCCTGTACCTGACACAGGATTGCATGGAGGAAATCATAATGATTTCGCCTTTAATTATCAAAGCCTAGCAGTTGAAGAAAAAAAGGAGTTTCTTGTTGTAGCTCGCAATAGCCTTGAACTGCTGTCTAGTATTTTAAATACTGAAACTGATCCAAAACCTTTGAAGGAAGAACTAACCCTGAACATGCTGGACAAGTGCAAGGAGTCTCAGCCTGTTATTAAGAGGATTATAGAAACCACTACTGATGACGAAGGGATGCTCTTTGAGGCTCTATTTCTTCACGAAGAACTTCAACAAGTCATTTCCAGGTATGAAGACTTGGAAGGTTCTCAAAAGTCTGGAGTCCAACAGCTTGAAAACCCTGAAACCACCAACCATGACGGGGTGAAAGCTGTTCAAAATCCCGGAGAACTGCCCGGAAACTCTAACAGCACTGCTCGTGAGGATTCAGAAGACACCCAAAAACCTGGTGGAAAACTGCCCGAAAATTCCATTGCTTCTGAAGGCAATTCATCTGCTCCTGTAGGAACCAATACTGAAACCAAAATAGTGGATTCTCCAAAGGAAGACCCCAAGATCAGCAGTGAAAAAGTCGGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0032182 GO:0043130 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GAT VHS

Protein Analysis

400

Amino Acids

44.35

Weight (kDa)

4.75

Isoelectric Point (pI)

45.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06210 AT1G06210
fragaria_vesca	FvH4_2g21370 FvH4_2g21370
malus_domestica	MD05G1196400.v1.1
prunus_persica	Prupe.8G222800_v2.0.a1
pyrus_communis	pycom05g18340
rosa_chinensis	RchiOBHm_Chr6g0287961
rosa_laevigata	RLG00000012451
rosa_multiflora	Rmu_sc0005266.1_g000005 Rmu_sc0005309.1_g000002
rosa_roxburghii	Rroxscaffold_7G00180630 Rroxscaffold_7G00180910
rosa_rugosa	Rorug06G0193700
rosa_samantha	Rh6AG303000 Rh6BG309200 Rh6CG300500 Rh6CG316900 Rh6DG301700
rosa_wichuraiana	Rw6G026200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	548
AciI	CCGC	1 cut(s)	575
AclWI	GGATC	1 cut(s)	740
AcsI	RAATTY	3 cut(s)	90, 172, 1084
AcuI	CTGAAG	1 cut(s)	1119
AfaI	GTAC	1 cut(s)	603
AfiI	CCNNNNNNNGG	3 cut(s)	164, 611, 979
AgsI	TTSAA	7 cut(s)	13, 671, 713, 760, 890, 953, 995
AjnI	CCWGG	2 cut(s)	902, 1063
AluBI	AGCT	7 cut(s)	20, 53, 451, 489, 698, 949, 989
AluI	AGCT	7 cut(s)	20, 53, 451, 489, 698, 949, 989
Alw21I	GWGCWC	1 cut(s)	55
Alw26I	GTCTC	4 cut(s)	137, 290, 585, 807
AlwI	GGATC	1 cut(s)	740
AoxI	GGCC	1 cut(s)	231
ApoI	RAATTY	3 cut(s)	90, 172, 1084
Asp700I	GAANNNNTTC	2 cut(s)	323, 885
AspS9I	GGNCC	2 cut(s)	216, 231
AsuC2I	CCSGG	2 cut(s)	1002, 1014
AsuHPI	GGTGA	4 cut(s)	41, 277, 525, 994
AvaII	GGWCC	1 cut(s)	216
BanII	GRGCYC	1 cut(s)	55
BauI	CACGAG	2 cut(s)	569, 1035
BbsI	GAAGAC	3 cut(s)	918, 1056, 1170
Bbv12I	GWGCWC	1 cut(s)	55
BciT130I	CCWGG	2 cut(s)	904, 1065
BclI	TGATCA	1 cut(s)	192
BcnI	CCSGG	2 cut(s)	1002, 1014
BcoDI	GTCTC	4 cut(s)	137, 290, 585, 807
BfaI	CTAG	3 cut(s)	17, 662, 723
BfmI	CTRYAG	1 cut(s)	1119
BisI	GCNGC	1 cut(s)	575
BlsI	GCNGC	1 cut(s)	576
Bme1390I	CCNGG	4 cut(s)	904, 1002, 1014, 1065
Bme18I	GGWCC	1 cut(s)	216
BmgT120I	GGNCC	2 cut(s)	216, 231
BmiI	GGNNCC	3 cut(s)	156, 217, 1126
BmrFI	CCNGG	4 cut(s)	904, 1002, 1014, 1065
BmsI	GCATC	4 cut(s)	351, 382, 531, 843
BpiI	GAAGAC	3 cut(s)	918, 1056, 1170
BpmI	CTGGAG	1 cut(s)	957
BpuEI	CTTGAG	1 cut(s)	511
BpuMI	CCSGG	2 cut(s)	1002, 1014
Bsa29I	ATCGAT	1 cut(s)	126
BsaI	GGTCTC	1 cut(s)	137
BsaJI	CCNNGG	3 cut(s)	147, 330, 552
BsaXI	ACNNNNNCTCC	2 cut(s)	335, 365
Bsc4I	CCNNNNNNNGG	3 cut(s)	164, 611, 979
Bse3DI	GCAATG	2 cut(s)	195, 1089
BseBI	CCWGG	2 cut(s)	904, 1065
BseCI	ATCGAT	1 cut(s)	126
BseDI	CCNNGG	3 cut(s)	147, 330, 552
BseGI	GGATG	2 cut(s)	361, 858
BseLI	CCNNNNNNNGG	3 cut(s)	164, 611, 979
BseMI	GCAATG	2 cut(s)	195, 1089
BseMII	CTCAG	2 cut(s)	435, 818
BseRI	GAGGAG	2 cut(s)	167, 461
BshFI	GGCC	1 cut(s)	233
BshVI	ATCGAT	1 cut(s)	126
BsiHKAI	GWGCWC	1 cut(s)	55
BsiSI	CCGG	2 cut(s)	1002, 1014
BslFI	GGGAC	1 cut(s)	541
BslI	CCNNNNNNNGG	3 cut(s)	164, 611, 979
BsmAI	GTCTC	4 cut(s)	137, 290, 585, 807
BsmFI	GGGAC	1 cut(s)	541
BsnI	GGCC	1 cut(s)	233
Bso31I	GGTCTC	1 cut(s)	137
Bsp1286I	GDGCHC	1 cut(s)	55
Bsp143I	GATC	4 cut(s)	123, 192, 745, 1173
BspACI	CCGC	1 cut(s)	575
BspANI	GGCC	1 cut(s)	233
BspCNI	CTCAG	2 cut(s)	436, 817
BspDI	ATCGAT	1 cut(s)	126
BspLI	GGNNCC	3 cut(s)	156, 217, 1126
BspPI	GGATC	1 cut(s)	740
BspTNI	GGTCTC	1 cut(s)	137
BsrDI	GCAATG	2 cut(s)	195, 1089
BssECI	CCNNGG	3 cut(s)	147, 330, 552
BssMI	GATC	4 cut(s)	123, 192, 745, 1173
BssSI	CACGAG	2 cut(s)	569, 1035
BssT1I	CCWWGG	2 cut(s)	147, 552
Bst2BI	CACGAG	2 cut(s)	569, 1035
Bst2UI	CCWGG	2 cut(s)	904, 1065
Bst6I	CTCTTC	1 cut(s)	198
BstC8I	GCNNGC	2 cut(s)	453, 700
BstDEI	CTNAG	3 cut(s)	365, 444, 804
BstENI	CCTNNNNNAGG	1 cut(s)	609
BstF5I	GGATG	2 cut(s)	361, 858
BstKTI	GATC	4 cut(s)	126, 195, 748, 1176
BstMAI	GTCTC	4 cut(s)	137, 290, 585, 807
BstMBI	GATC	4 cut(s)	123, 192, 745, 1173
BstNI	CCWGG	2 cut(s)	904, 1065
BstNSI	RCATGY	1 cut(s)	784
BstSCI	CCNGG	4 cut(s)	902, 1000, 1012, 1063
BstSFI	CTRYAG	1 cut(s)	1119
BstV2I	GAAGAC	3 cut(s)	918, 1056, 1170
BstXI	CCANNNNNNTGG	2 cut(s)	1064, 1147
Bsu15I	ATCGAT	1 cut(s)	126
BsuRI	GGCC	1 cut(s)	233
BsuTUI	ATCGAT	1 cut(s)	126
BtsCI	GGATG	2 cut(s)	361, 858
BtsI	GCAGTG	2 cut(s)	1029, 1186
BtsIMutI	CAGTG	2 cut(s)	1029, 1186
Cac8I	GCNNGC	2 cut(s)	453, 700
Cfr13I	GGNCC	2 cut(s)	216, 231
ClaI	ATCGAT	1 cut(s)	126
CseI	GACGC	1 cut(s)	327
CsiI	ACCWGGT	1 cut(s)	1063
Csp6I	GTAC	1 cut(s)	602
CviAII	CATG	4 cut(s)	484, 620, 781, 974
CviQI	GTAC	1 cut(s)	602
DdeI	CTNAG	3 cut(s)	365, 444, 804
DpnI	GATC	4 cut(s)	125, 194, 747, 1175
DpnII	GATC	4 cut(s)	123, 192, 745, 1173
DraI	TTTAAA	1 cut(s)	732
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
Ecl136II	GAGCTC	1 cut(s)	53
Eco130I	CCWWGG	2 cut(s)	147, 552
Eco24I	GRGCYC	1 cut(s)	55
Eco31I	GGTCTC	1 cut(s)	137
Eco47I	GGWCC	1 cut(s)	216
Eco53kI	GAGCTC	1 cut(s)	53
Eco57I	CTGAAG	1 cut(s)	1119
EcoICRI	GAGCTC	1 cut(s)	53
EcoNI	CCTNNNNNAGG	1 cut(s)	609
EcoRII	CCWGG	2 cut(s)	902, 1063
EcoT14I	CCWWGG	2 cut(s)	147, 552
EcoT38I	GRGCYC	1 cut(s)	55
ErhI	CCWWGG	2 cut(s)	147, 552
FaeI	CATG	4 cut(s)	487, 623, 784, 977
FaqI	GGGAC	1 cut(s)	541
FatI	CATG	4 cut(s)	483, 619, 780, 973
FauNDI	CATATG	1 cut(s)	562
FbaI	TGATCA	1 cut(s)	192
FblI	GTMKAC	1 cut(s)	548
Fnu4HI	GCNGC	1 cut(s)	575
FokI	GGATG	2 cut(s)	368, 865
FriOI	GRGCYC	1 cut(s)	55
Fsp4HI	GCNGC	1 cut(s)	575
FspBI	CTAG	3 cut(s)	17, 662, 723
GluI	GCNGC	1 cut(s)	575
GsuI	CTGGAG	1 cut(s)	957
HaeIII	GGCC	1 cut(s)	233
HapII	CCGG	2 cut(s)	1002, 1014
HgaI	GACGC	1 cut(s)	327
Hin1II	CATG	4 cut(s)	487, 623, 784, 977
HpaII	CCGG	2 cut(s)	1002, 1014
HphI	GGTGA	4 cut(s)	41, 277, 525, 994
Hpy166II	GTNNAC	2 cut(s)	549, 568
Hpy188I	TCNGA	6 cut(s)	220, 331, 343, 445, 1048, 1099
Hpy188III	TCNNGA	5 cut(s)	284, 569, 878, 936, 1037
Hpy8I	GTNNAC	2 cut(s)	549, 568
Hpy99I	CGWCG	1 cut(s)	343
HpyAV	CCTTC	8 cut(s)	79, 313, 340, 518, 754, 842, 914, 1094
HpyCH4V	TGCA	7 cut(s)	97, 188, 418, 455, 544, 619, 795
HpyF3I	CTNAG	3 cut(s)	365, 444, 804
Hsp92II	CATG	4 cut(s)	487, 623, 784, 977
Ksp22I	TGATCA	1 cut(s)	192
Kzo9I	GATC	4 cut(s)	123, 192, 745, 1173
LmnI	GCTCC	4 cut(s)	50, 154, 448, 1120
LweI	GCATC	4 cut(s)	351, 382, 531, 843
MabI	ACCWGGT	1 cut(s)	1063
MaeI	CTAG	3 cut(s)	17, 662, 723
MalI	GATC	4 cut(s)	125, 194, 747, 1175
MboI	GATC	4 cut(s)	123, 192, 745, 1173
MfeI	CAATTG	2 cut(s)	23, 419
MhlI	GDGCHC	1 cut(s)	55
MluCI	AATT	9 cut(s)	23, 90, 160, 172, 310, 419, 649, 1084, 1105
MlyI	GAGTC	4 cut(s)	289, 449, 809, 948
MmeI	TCCRAC	4 cut(s)	273, 321, 333, 967
MroXI	GAANNNNTTC	2 cut(s)	323, 885
MseI	TTAA	4 cut(s)	38, 648, 731, 816
MspA1I	CMGCKG	1 cut(s)	577
MspI	CCGG	2 cut(s)	1002, 1014
MspR9I	CCNGG	4 cut(s)	904, 1002, 1014, 1065
MunI	CAATTG	2 cut(s)	23, 419
MvaI	CCWGG	2 cut(s)	904, 1065
NciI	CCSGG	2 cut(s)	1002, 1014
NdeI	CATATG	1 cut(s)	562
NdeII	GATC	4 cut(s)	123, 192, 745, 1173
NlaIII	CATG	4 cut(s)	487, 623, 784, 977
NlaIV	GGNNCC	3 cut(s)	156, 217, 1126
NspI	RCATGY	1 cut(s)	784
PdmI	GAANNNNTTC	2 cut(s)	323, 885
PfeI	GAWTC	6 cut(s)	13, 113, 379, 557, 1043, 1151
PfoI	TCCNGGA	1 cut(s)	1000
PkrI	GCNGC	1 cut(s)	576
PleI	GAGTC	4 cut(s)	288, 448, 808, 947
PpsI	GAGTC	4 cut(s)	288, 448, 808, 947
Psp124BI	GAGCTC	1 cut(s)	55
Psp6I	CCWGG	2 cut(s)	902, 1063
PspGI	CCWGG	2 cut(s)	902, 1063
PspN4I	GGNNCC	3 cut(s)	156, 217, 1126
PspPI	GGNCC	2 cut(s)	216, 231
RsaI	GTAC	1 cut(s)	603
RsaNI	GTAC	1 cut(s)	602
SacI	GAGCTC	1 cut(s)	55
SaqAI	TTAA	4 cut(s)	38, 648, 731, 816
SatI	GCNGC	1 cut(s)	575
Sau3AI	GATC	4 cut(s)	123, 192, 745, 1173
Sau96I	GGNCC	2 cut(s)	216, 231
SchI	GAGTC	4 cut(s)	289, 449, 809, 948
ScrFI	CCNGG	4 cut(s)	904, 1002, 1014, 1065
SduI	GDGCHC	1 cut(s)	55
SexAI	ACCWGGT	1 cut(s)	1063
SfaNI	GCATC	4 cut(s)	351, 382, 531, 843
SfcI	CTRYAG	1 cut(s)	1119
SinI	GGWCC	1 cut(s)	216
SmlI	CTYRAG	1 cut(s)	490
SmoI	CTYRAG	1 cut(s)	490
Sse9I	AATT	9 cut(s)	23, 90, 160, 172, 310, 419, 649, 1084, 1105
SsiI	CCGC	1 cut(s)	575
SspMI	CTAG	3 cut(s)	17, 662, 723
SstI	GAGCTC	1 cut(s)	55
StyD4I	CCNGG	4 cut(s)	902, 1000, 1012, 1063
StyI	CCWWGG	2 cut(s)	147, 552
TaqI	TCGA	4 cut(s)	64, 116, 126, 539
TasI	AATT	9 cut(s)	23, 90, 160, 172, 310, 419, 649, 1084, 1105
TauI	GCSGC	1 cut(s)	577
TfiI	GAWTC	6 cut(s)	13, 113, 379, 557, 1043, 1151
Tru1I	TTAA	4 cut(s)	38, 648, 731, 816
Tru9I	TTAA	4 cut(s)	38, 648, 731, 816
TscAI	CASTG	2 cut(s)	1036, 1186
TspDTI	ATGAA	5 cut(s)	144, 185, 323, 924, 1098
TspRI	CASTG	2 cut(s)	1036, 1186
VpaK11BI	GGWCC	1 cut(s)	216
XagI	CCTNNNNNAGG	1 cut(s)	609
XapI	RAATTY	3 cut(s)	90, 172, 1084
XceI	RCATGY	1 cut(s)	784
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1064
XmiI	GTMKAC	1 cut(s)	548
XmnI	GAANNNNTTC	2 cut(s)	323, 885
XspI	CTAG	3 cut(s)	17, 662, 723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.