Rmu_sc0005309.1_g000002

VHS domain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005309.1
Physical Location & Seq
Reverse (-)
4119 .. 8233
4115 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005309.1_g000002.1.cds

Sequence Viewer

Length: 1686 bp
atggatcgcctccgaaacgatacgctgattgaggtggatgtgcttaatcgtattgccaagaacgatactagcaactcatgctatgtgcagattcgcgattggttttggagcttgatgtggctccagatctgcttcacggcctcggcacgagaggacttaggggtgctgccgaggaagttgccgagagttggagagatcagagtcggctttagaatgccagcgttcctgttgacgtttctcttgggcttgatcgcgtctgcttctgctttgggcttcgccttcgccttcgattttggtgaggcggcgacgaccttgacggcggttccagtagtggatgtggaggacttggccggcagtgggaagaagaacggggaacttggtggtggtctggaagagagagggggagggatcaacgcttccacccatccccgtgtttcgtcgccggagccccgcagggttgtgagttttttttgtgctggtggagtcatggacaagtttaatttaggtcagttgggtaacttgggcgagaaattggtgacgagtggagctcaaatgggtcggatggttagtggcaaagtgaaggagattctggctaccccgactccggaatcgaggatgattgatgaggccaccttggagacaatggaggagcccaattggggcttgaatttgaggatatgtgctatgattaacagtgaggagtttagtgggtcggaagttgtgagggttataaagaggaaggtttcggggaagagtgttgtcacacagaggctcagtcttgacttgttggaggcgtgtactatgaattgcgagaaggtgttctcggaggttgcgtcggagaaggtgttggatgacatgcttaggatgattgataatccgcagactgatagcgaaaatagacgcagggctatgcagttgataagggcttggggagagtctcaggatcttgcatatctacctgtgtttcgtcagacttacatgatcttgagagaaaaaggagcacatccagtagcacaaggagggacttcgccctcgttgcaatctaccttggaatcatacatggaagagcctctgcctcccccggaaagataccctgtacctgacacaggatttcatgatgcaagtgaccgtgaatttcgctataactacctgtcagttgagggaaaaaaagaatatcttgttgtaactcgcaatagcctggagctgctgtctagtattttgaatactgaaacagatccaaaacctttgaaggaagaactaaccatgaacatgctggaaaagtgcaaggagtctcagcctgttattcagaggattatagaaaccactactgatgatgaagggatgctctttgaggcactatttcttcatgaagaacttcaacaagttatttccaagtatcaggagttggaagcttctcaaaactctggaggccaagaactcgaaaacccggatgccaccaggcctgaggggtcagaagcggctcaaaatggagaactaccaataagctctaaaccctctgagtgtgaggatttagataacagccaaaaacatggtggtaaactgcctgaatattccaatgattctgaagttggcccatcagctcctctgggaattcatagtgaaaccaaaatagcagattctgtacaagaaggcactccgtctatcagtgaaaaagttggccattga
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

561

Amino Acids

62.01

Weight (kDa)

4.82

Isoelectric Point (pI)

45.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011482)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 731
AccII CGCG 2 cut(s) 96, 254
AccIII TCCGGA 1 cut(s) 604
AciI CCGC 5 cut(s) 302, 320, 451, 878, 1478
AclWI GGATC 4 cut(s) 12, 416, 951, 1229
AcoI YGGCCR 2 cut(s) 348, 1678
AcsI RAATTY 3 cut(s) 667, 1133, 1611
AcuI CTGAAG 1 cut(s) 1605
AfaI GTAC 3 cut(s) 799, 1098, 1644
AfiI CCNNNNNNNGG 5 cut(s) 188, 357, 604, 659, 1106
AgsI TTSAA 4 cut(s) 667, 1222, 1249, 1379
AjnI CCWGG 2 cut(s) 1197, 1457
AluBI AGCT 6 cut(s) 111, 548, 1204, 1412, 1506, 1601
AluI AGCT 6 cut(s) 111, 548, 1204, 1412, 1506, 1601
Alw21I GWGCWC 2 cut(s) 550, 1003
Alw26I GTCTC 3 cut(s) 632, 942, 1296
AlwI GGATC 4 cut(s) 12, 416, 951, 1229
AlwNI CAGNNNCTG 1 cut(s) 1640
Aor13HI TCCGGA 1 cut(s) 604
AoxI GGCC 7 cut(s) 138, 348, 627, 1429, 1460, 1591, 1678
ApeKI GCWGC 2 cut(s) 166, 1204
ApoI RAATTY 3 cut(s) 667, 1133, 1611
Asp700I GAANNNNTTC 2 cut(s) 818, 1374
AspS9I GGNCC 1 cut(s) 1592
AsuC2I CCSGG 2 cut(s) 1082, 1448
AsuHPI GGTGA 2 cut(s) 308, 547
AxyI CCTNAGG 1 cut(s) 1464
BalI TGGCCA 1 cut(s) 1680
BanII GRGCYC 3 cut(s) 450, 550, 654
BauI CACGAG 1 cut(s) 147
Bbv12I GWGCWC 2 cut(s) 550, 1003
BbvI GCAGC 2 cut(s) 153, 1191
BccI CCATC 3 cut(s) 432, 556, 1603
BceAI ACGGC 2 cut(s) 153, 333
BcgI CGANNNNNNTGC 2 cut(s) 160, 194
BciT130I CCWGG 2 cut(s) 1199, 1459
BcnI CCSGG 2 cut(s) 1082, 1448
BcoDI GTCTC 3 cut(s) 632, 942, 1296
BfaI CTAG 2 cut(s) 69, 1212
BglII AGATCT 1 cut(s) 126
BisI GCNGC 4 cut(s) 167, 303, 1205, 1479
BlsI GCNGC 4 cut(s) 168, 304, 1206, 1480
Bme1390I CCNGG 4 cut(s) 1082, 1199, 1448, 1459
BmgT120I GGNCC 1 cut(s) 1592
BmiI GGNNCC 4 cut(s) 122, 324, 447, 651
BmrFI CCNGG 4 cut(s) 1082, 1199, 1448, 1459
BmsI GCATC 3 cut(s) 1108, 1332, 1441
BplI GAGNNNNNCTC 2 cut(s) 532, 564
BpmI CTGGAG 3 cut(s) 107, 1220, 1446
Bpu10I CCTNAGC 1 cut(s) 860
BpuEI CTTGAG 1 cut(s) 1006
BpuMI CCSGG 2 cut(s) 1082, 1448
BsaJI CCNNGG 5 cut(s) 141, 170, 633, 1047, 1080
BsaWI WCCGGW 1 cut(s) 604
BsaXI ACNNNNNCTCC 8 cut(s) 586, 616, 818, 830, 848, 860, 1193, 1223
Bsc4I CCNNNNNNNGG 5 cut(s) 188, 357, 604, 659, 1106
Bse118I RCCGGY 1 cut(s) 350
Bse1I ACTGG 2 cut(s) 326, 1007
Bse21I CCTNAGG 1 cut(s) 1464
BseAI TCCGGA 1 cut(s) 604
BseBI CCWGG 2 cut(s) 1199, 1459
BseDI CCNNGG 5 cut(s) 141, 170, 633, 1047, 1080
BseLI CCNNNNNNNGG 5 cut(s) 188, 357, 604, 659, 1106
BseMII CTCAG 5 cut(s) 787, 953, 1307, 1455, 1509
BseNI ACTGG 2 cut(s) 326, 1007
BseRI GAGGAG 3 cut(s) 662, 713, 1593
BseXI GCAGC 2 cut(s) 153, 1191
BsgI GTGCAG 1 cut(s) 107
Bsh1236I CGCG 2 cut(s) 96, 254
BshFI GGCC 7 cut(s) 140, 350, 629, 1431, 1462, 1593, 1680
BsiHKAI GWGCWC 2 cut(s) 550, 1003
BsiSI CCGG 5 cut(s) 351, 443, 605, 1082, 1448
BslFI GGGAC 1 cut(s) 1036
BslI CCNNNNNNNGG 5 cut(s) 188, 357, 604, 659, 1106
BsmAI GTCTC 3 cut(s) 632, 942, 1296
BsmFI GGGAC 1 cut(s) 1036
BsmI GAATGC 1 cut(s) 219
BsnI GGCC 7 cut(s) 140, 350, 629, 1431, 1462, 1593, 1680
Bsp1286I GDGCHC 4 cut(s) 450, 550, 654, 1003
Bsp13I TCCGGA 1 cut(s) 604
Bsp1407I TGTACA 1 cut(s) 1642
Bsp143I GATC 8 cut(s) 4, 126, 195, 249, 408, 943, 981, 1234
Bsp68I TCGCGA 1 cut(s) 96
BspACI CCGC 5 cut(s) 302, 320, 451, 878, 1478
BspANI GGCC 7 cut(s) 140, 350, 629, 1431, 1462, 1593, 1680
BspCNI CTCAG 5 cut(s) 786, 952, 1306, 1456, 1510
BspEI TCCGGA 1 cut(s) 604
BspFNI CGCG 2 cut(s) 96, 254
BspHI TCATGA 2 cut(s) 1114, 1366
BspLI GGNNCC 4 cut(s) 122, 324, 447, 651
BspPI GGATC 4 cut(s) 12, 416, 951, 1229
BspQI GCTCTTC 1 cut(s) 1059
BsrFI RCCGGY 1 cut(s) 350
BsrGI TGTACA 1 cut(s) 1642
BsrI ACTGG 2 cut(s) 326, 1007
BssAI RCCGGY 1 cut(s) 350
BssECI CCNNGG 5 cut(s) 141, 170, 633, 1047, 1080
BssMI GATC 8 cut(s) 4, 126, 195, 249, 408, 943, 981, 1234
BssSI CACGAG 1 cut(s) 147
BssT1I CCWWGG 2 cut(s) 633, 1047
Bst2BI CACGAG 1 cut(s) 147
Bst2UI CCWGG 2 cut(s) 1199, 1459
Bst4CI ACNGT 2 cut(s) 695, 1130
Bst6I CTCTTC 3 cut(s) 387, 746, 1059
BstAPI GCANNNNNTGC 1 cut(s) 78
BstAUI TGTACA 1 cut(s) 1642
BstC8I GCNNGC 2 cut(s) 219, 352
BstDEI CTNAG 7 cut(s) 157, 773, 860, 939, 1293, 1464, 1518
BstENI CCTNNNNNAGG 1 cut(s) 1104
BstFNI CGCG 2 cut(s) 96, 254
BstKTI GATC 8 cut(s) 7, 129, 198, 252, 411, 946, 984, 1237
BstMAI GTCTC 3 cut(s) 632, 942, 1296
BstMBI GATC 8 cut(s) 4, 126, 195, 249, 408, 943, 981, 1234
BstMWI GCNNNNNNNGC 2 cut(s) 78, 1036
BstNI CCWGG 2 cut(s) 1199, 1459
BstNSI RCATGY 2 cut(s) 859, 1273
BstSCI CCNGG 4 cut(s) 1080, 1197, 1446, 1457
BstUI CGCG 2 cut(s) 96, 254
BstV1I GCAGC 2 cut(s) 153, 1191
BstX2I RGATCY 3 cut(s) 126, 943, 1234
BstXI CCANNNNNNTGG 1 cut(s) 1550
BstYI RGATCY 3 cut(s) 126, 943, 1234
Bsu36I CCTNAGG 1 cut(s) 1464
BsuRI GGCC 7 cut(s) 140, 350, 629, 1431, 1462, 1593, 1680
BtsI GCAGTG 1 cut(s) 361
BtsIMutI CAGTG 3 cut(s) 361, 700, 1672
BtuMI TCGCGA 1 cut(s) 96
Cac8I GCNNGC 2 cut(s) 219, 352
CaiI CAGNNNCTG 1 cut(s) 1640
CciI TCATGA 2 cut(s) 1114, 1366
Cfr10I RCCGGY 1 cut(s) 350
Cfr13I GGNCC 1 cut(s) 1592
CseI GACGC 3 cut(s) 243, 822, 909
Csp6I GTAC 3 cut(s) 798, 1097, 1643
CviQI GTAC 3 cut(s) 798, 1097, 1643
DdeI CTNAG 7 cut(s) 157, 773, 860, 939, 1293, 1464, 1518
DpnI GATC 8 cut(s) 6, 128, 197, 251, 410, 945, 983, 1236
DpnII GATC 8 cut(s) 4, 126, 195, 249, 408, 943, 981, 1234
EaeI YGGCCR 2 cut(s) 348, 1678
Eam1104I CTCTTC 3 cut(s) 387, 746, 1059
EarI CTCTTC 3 cut(s) 387, 746, 1059
Ecl136II GAGCTC 1 cut(s) 548
Eco130I CCWWGG 2 cut(s) 633, 1047
Eco147I AGGCCT 1 cut(s) 1462
Eco24I GRGCYC 3 cut(s) 450, 550, 654
Eco53kI GAGCTC 1 cut(s) 548
Eco57I CTGAAG 1 cut(s) 1605
Eco81I CCTNAGG 1 cut(s) 1464
EcoICRI GAGCTC 1 cut(s) 548
EcoNI CCTNNNNNAGG 1 cut(s) 1104
EcoRI GAATTC 1 cut(s) 1611
EcoRII CCWGG 2 cut(s) 1197, 1457
EcoT14I CCWWGG 2 cut(s) 633, 1047
EcoT38I GRGCYC 3 cut(s) 450, 550, 654
ErhI CCWWGG 2 cut(s) 633, 1047
FalI AAGNNNNNCTT 2 cut(s) 1161, 1193
FaqI GGGAC 1 cut(s) 1036
FauI CCCGC 1 cut(s) 458
Fnu4HI GCNGC 4 cut(s) 167, 303, 1205, 1479
FriOI GRGCYC 3 cut(s) 450, 550, 654
Fsp4HI GCNGC 4 cut(s) 167, 303, 1205, 1479
FspBI CTAG 2 cut(s) 69, 1212
GluI GCNGC 4 cut(s) 167, 303, 1205, 1479
GsuI CTGGAG 3 cut(s) 107, 1220, 1446
HaeIII GGCC 7 cut(s) 140, 350, 629, 1431, 1462, 1593, 1680
HapII CCGG 5 cut(s) 351, 443, 605, 1082, 1448
HgaI GACGC 3 cut(s) 243, 822, 909
HincII GTYRAC 1 cut(s) 231
HindII GTYRAC 1 cut(s) 231
HindIII AAGCTT 1 cut(s) 1410
HpaII CCGG 5 cut(s) 351, 443, 605, 1082, 1448
HphI GGTGA 2 cut(s) 308, 547
Hpy166II GTNNAC 3 cut(s) 231, 798, 1559
Hpy8I GTNNAC 3 cut(s) 231, 798, 1559
Hpy99I CGWCG 3 cut(s) 310, 442, 838
HpyAV CCTTC 9 cut(s) 289, 295, 574, 733, 808, 835, 1243, 1331, 1643
HpyCH4III ACNGT 2 cut(s) 695, 1130
HpyCH4IV ACGT 1 cut(s) 233
HpyCH4V TGCA 6 cut(s) 88, 913, 950, 1039, 1121, 1284
HpyF10VI GCNNNNNNNGC 2 cut(s) 78, 1036
HpyF3I CTNAG 7 cut(s) 157, 773, 860, 939, 1293, 1464, 1518
HpySE526I ACGT 1 cut(s) 233
Kpn2I TCCGGA 1 cut(s) 604
KroI GCCGGC 1 cut(s) 350
KroNI GCCGGC 1 cut(s) 352
Kzo9I GATC 8 cut(s) 4, 126, 195, 249, 408, 943, 981, 1234
LguI GCTCTTC 1 cut(s) 1059
LmnI GCTCC 8 cut(s) 108, 126, 445, 545, 649, 998, 1201, 1606
Lsp1109I GCAGC 2 cut(s) 153, 1191
LweI GCATC 3 cut(s) 1108, 1332, 1441
MaeI CTAG 2 cut(s) 69, 1212
MaeII ACGT 1 cut(s) 233
MaeIII GTNAC 5 cut(s) 515, 535, 760, 1124, 1183
MalI GATC 8 cut(s) 6, 128, 197, 251, 410, 945, 983, 1236
MboI GATC 8 cut(s) 4, 126, 195, 249, 408, 943, 981, 1234
MboII GAAGA 8 cut(s) 373, 376, 404, 763, 1076, 1265, 1355, 1382
MfeI CAATTG 1 cut(s) 655
MflI RGATCY 3 cut(s) 126, 943, 1234
MhlI GDGCHC 4 cut(s) 450, 550, 654, 1003
MlsI TGGCCA 1 cut(s) 1680
MluCI AATT 7 cut(s) 499, 530, 655, 667, 805, 1133, 1611
MluNI TGGCCA 1 cut(s) 1680
MlyI GAGTC 5 cut(s) 210, 492, 595, 944, 1298
MmeI TCCRAC 7 cut(s) 169, 539, 693, 768, 816, 828, 1386
Mox20I TGGCCA 1 cut(s) 1680
MroI TCCGGA 1 cut(s) 604
MroNI GCCGGC 1 cut(s) 350
MroXI GAANNNNTTC 2 cut(s) 818, 1374
MscI TGGCCA 1 cut(s) 1680
MseI TTAA 3 cut(s) 45, 498, 690
MslI CAYNNNNRTG 2 cut(s) 429, 1268
Msp20I TGGCCA 1 cut(s) 1680
MspI CCGG 5 cut(s) 351, 443, 605, 1082, 1448
MspR9I CCNGG 4 cut(s) 1082, 1199, 1448, 1459
MunI CAATTG 1 cut(s) 655
Mva1269I GAATGC 1 cut(s) 219
MvaI CCWGG 2 cut(s) 1199, 1459
MvnI CGCG 2 cut(s) 96, 254
MwoI GCNNNNNNNGC 2 cut(s) 78, 1036
NaeI GCCGGC 1 cut(s) 352
NciI CCSGG 2 cut(s) 1082, 1448
NdeII GATC 8 cut(s) 4, 126, 195, 249, 408, 943, 981, 1234
NgoMIV GCCGGC 1 cut(s) 350
NlaIV GGNNCC 4 cut(s) 122, 324, 447, 651
NmeAIII GCCGAG 3 cut(s) 122, 195, 207
NmuCI GTSAC 3 cut(s) 535, 760, 1124
NruI TCGCGA 1 cut(s) 96
NspI RCATGY 2 cut(s) 859, 1273
PagI TCATGA 2 cut(s) 1114, 1366
PceI AGGCCT 1 cut(s) 1462
PciSI GCTCTTC 1 cut(s) 1059
PcsI WCGNNNNNNNCGW 1 cut(s) 830
PctI GAATGC 1 cut(s) 219
PdiI GCCGGC 1 cut(s) 352
PdmI GAANNNNTTC 2 cut(s) 818, 1374
PfeI GAWTC 6 cut(s) 91, 586, 608, 1052, 1580, 1637
PkrI GCNGC 4 cut(s) 168, 304, 1206, 1480
PleI GAGTC 5 cut(s) 209, 491, 595, 943, 1297
PpsI GAGTC 5 cut(s) 209, 491, 595, 943, 1297
PsiI TTATAA 1 cut(s) 731
Psp124BI GAGCTC 1 cut(s) 550
Psp6I CCWGG 2 cut(s) 1197, 1457
PspGI CCWGG 2 cut(s) 1197, 1457
PspN4I GGNNCC 4 cut(s) 122, 324, 447, 651
PspPI GGNCC 1 cut(s) 1592
PstNI CAGNNNCTG 1 cut(s) 1640
PsuI RGATCY 3 cut(s) 126, 943, 1234
RruI TCGCGA 1 cut(s) 96
RsaI GTAC 3 cut(s) 799, 1098, 1644
RsaNI GTAC 3 cut(s) 798, 1097, 1643
RseI CAYNNNNRTG 2 cut(s) 429, 1268
SacI GAGCTC 1 cut(s) 550
SapI GCTCTTC 1 cut(s) 1059
SaqAI TTAA 3 cut(s) 45, 498, 690
SatI GCNGC 4 cut(s) 167, 303, 1205, 1479
Sau3AI GATC 8 cut(s) 4, 126, 195, 249, 408, 943, 981, 1234
Sau96I GGNCC 1 cut(s) 1592
SchI GAGTC 5 cut(s) 210, 492, 595, 944, 1298
ScrFI CCNGG 4 cut(s) 1082, 1199, 1448, 1459
SduI GDGCHC 4 cut(s) 450, 550, 654, 1003
SfaNI GCATC 3 cut(s) 1108, 1332, 1441
SmiMI CAYNNNNRTG 2 cut(s) 429, 1268
SmlI CTYRAG 1 cut(s) 985
SmoI CTYRAG 1 cut(s) 985
Sse9I AATT 7 cut(s) 499, 530, 655, 667, 805, 1133, 1611
SseBI AGGCCT 1 cut(s) 1462
SsiI CCGC 5 cut(s) 302, 320, 451, 878, 1478
SspI AATATT 1 cut(s) 1571
SspMI CTAG 2 cut(s) 69, 1212
SstI GAGCTC 1 cut(s) 550
StuI AGGCCT 1 cut(s) 1462
StyD4I CCNGG 4 cut(s) 1080, 1197, 1446, 1457
StyI CCWWGG 2 cut(s) 633, 1047
TaaI ACNGT 2 cut(s) 695, 1130
TaiI ACGT 1 cut(s) 236
TaqI TCGA 3 cut(s) 288, 611, 1440
TasI AATT 7 cut(s) 499, 530, 655, 667, 805, 1133, 1611
TatI WGTACW 2 cut(s) 797, 1642
TauI GCSGC 2 cut(s) 305, 1481
TfiI GAWTC 6 cut(s) 91, 586, 608, 1052, 1580, 1637
Tru1I TTAA 3 cut(s) 45, 498, 690
Tru9I TTAA 3 cut(s) 45, 498, 690
TscAI CASTG 3 cut(s) 361, 700, 1672
TseFI GTSAC 3 cut(s) 535, 760, 1124
TseI GCWGC 2 cut(s) 166, 1204
Tsp45I GTSAC 3 cut(s) 535, 760, 1124
TspDTI ATGAA 7 cut(s) 818, 1103, 1280, 1350, 1355, 1383, 1604
TspGWI ACGGA 1 cut(s) 1647
TspRI CASTG 3 cut(s) 361, 700, 1672
XagI CCTNNNNNAGG 1 cut(s) 1104
XapI RAATTY 3 cut(s) 667, 1133, 1611
XceI RCATGY 2 cut(s) 859, 1273
XcmI CCANNNNNNNNNTGG 2 cut(s) 1270, 1550
XmnI GAANNNNTTC 2 cut(s) 818, 1374
XspI CTAG 2 cut(s) 69, 1212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.