Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0011482

Physical Location & Seq

Genomic Coordinates Forward (+)

32376238 .. 32379688

Gene Structure 3451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1196400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGGACAAGTTGAATCTATCTCAGTTGGGGGAGAGGTTAAAGATAGGTGGAGCTCAAATGGGTCGAATGGTAAGTGGGAAAATGAAGGAAATGAAGGAGATTCTGCAAGCACCGACCCCGGAATCAAAGATGATCGACGAGGCCACTCTGGAGACCATGGAGGAGCCGAATTGGGGTATGAATTTGAGGATATGTGCAATGATCAATAGTGAAGAGTTTAGTGGGTCCGAAGTTGTTAAGGCCATAAAGAAGAAGATTACGGGTAAGAGTGTGGTGAGCCAGAGGCTGAGTCTTGACTTGTTGGAGGCTTGTACTATGAACTGCGAAAAGGTGTTTTCGGAGGTTGCATCTGAGAAGGTGTTGGAGGAGATGCTTAGGATGATTGATAATCCGCAAACGGATCATGAAAATAGACGAAGGGCTATGCAATTGATTAGGGCTTGGGGAGAGTCTGAGGATCTTGCATATCTGCCTGTATTTCATCAAACTTATGTGAGCTTGAGAGAGAGAAGCACCGATCCTTTAGCACAAGAAGGGGCTTCGCCCTCGTTGCAGTCTACCTTGGAGTCATATGTTCATGACCCGCTGTCTCCCCCTGAAAGATACCCTGTACCTGACACAGGATTGCATGGAGGAGCAAATCATAGTGATTTCCCCTTTAACTATCAAAATGTAGCAGTTGAAGACAAAAAAGAACTTCTTGTTGTAGCTCGCAATAGCCTTGAACTTCTGTCAAGTATTTTGAATACTGAAACAGATCCGAAACCTTTGAAGGAAGAACTAACCTTAAACATGCTGGACAAGTGCAAGGAGTCTCAGCCCGTTGTTAAAAGGATCATAGAAACCACTACCGATGATGAAGGGATGCTCTTTGAGGCCCTATTCCTTCACGAAGAACTCCAACAGATCATTTCCAAGTACGAAGAATTGGAAGCTTCTCAAAAGTCTGGAATCCAACAGCTTGAAAATCCTGCAATCACCTGGGATGAGGGGATGGAAGCTGGTCTAAACCCTGGAGAACTGCCTGGAAACTCCAACGCCACTGAGCGCGAGGATTTGGAAGACACCCAAAAACATGATGGAAAACTGCCCGAAAATTCCAGTGCTAATGAAGGCAGCTCGTCCGCTCAGGTAGGAAATCATAGCGAAACCAAAATAGTTGATTCTTCGCAGCAAGGCACCAAATCCAGCAGTGCTTCTGAAGGCAGCTCATCGGCTGAGGTAGGAGGAAAACATAGCGAAACCAAAATAGTTGATTCTCCGCACAAAGACCCCAGGTCCAGCAGCGAAAAATTAGGCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0032182 GO:0043130 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GAT VHS

Protein Analysis

435

Amino Acids

48.03

Weight (kDa)

4.8

Isoelectric Point (pI)

49.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VHS	PF00790	42 - 150	1.2e-19	VHS domain
GAT	PF03127	238 - 311	1.3e-13	GAT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06210 AT1G06210
fragaria_vesca	FvH4_2g21370 FvH4_2g21370
malus_domestica	MD05G1196400.v1.1
prunus_persica	Prupe.8G222800_v2.0.a1
pyrus_communis	pycom05g18340
rosa_chinensis	RchiOBHm_Chr6g0287961
rosa_laevigata	RLG00000012451
rosa_multiflora	Rmu_sc0005266.1_g000005 Rmu_sc0005309.1_g000002
rosa_roxburghii	Rroxscaffold_7G00180630 Rroxscaffold_7G00180910
rosa_rugosa	Rorug06G0193700
rosa_samantha	Rh6AG303000 Rh6BG309200 Rh6CG300500 Rh6CG316900 Rh6DG301700
rosa_wichuraiana	Rw6G026200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1178
AccBSI	CCGCTC	1 cut(s)	1127
AccI	GTMKAC	1 cut(s)	557
AccII	CGCG	1 cut(s)	1050
AciI	CCGC	4 cut(s)	392, 584, 1125, 1262
AclWI	GGATC	5 cut(s)	408, 465, 512, 752, 842
AcsI	RAATTY	2 cut(s)	181, 1096
AcuI	CTGAAG	1 cut(s)	1221
AfaI	GTAC	3 cut(s)	313, 612, 920
AfiI	CCNNNNNNNGG	2 cut(s)	173, 620
AgsI	TTSAA	6 cut(s)	13, 683, 725, 745, 772, 965
AhdI	GACNNNNNGTC	2 cut(s)	586, 1276
AjnI	CCWGG	4 cut(s)	980, 1012, 1024, 1274
AluBI	AGCT	8 cut(s)	53, 498, 710, 935, 961, 1001, 1119, 1209
AluI	AGCT	8 cut(s)	53, 498, 710, 935, 961, 1001, 1119, 1209
Alw21I	GWGCWC	1 cut(s)	55
Alw26I	GTCTC	3 cut(s)	146, 594, 819
AlwI	GGATC	5 cut(s)	408, 465, 512, 752, 842
AlwNI	CAGNNNCTG	1 cut(s)	286
AoxI	GGCC	3 cut(s)	141, 240, 876
ApeKI	GCWGC	4 cut(s)	1116, 1171, 1206, 1284
ApoI	RAATTY	2 cut(s)	181, 1096
AspLEI	GCGC	1 cut(s)	1050
AspS9I	GGNCC	3 cut(s)	225, 877, 1278
AsuC2I	CCSGG	1 cut(s)	119
AsuHPI	GGTGA	2 cut(s)	286, 970
AvaII	GGWCC	2 cut(s)	225, 1278
BanI	GGYRCC	1 cut(s)	1178
BanII	GRGCYC	1 cut(s)	55
BbsI	GAAGAC	2 cut(s)	690, 1068
Bbv12I	GWGCWC	1 cut(s)	55
BbvCI	CCTCAGC	1 cut(s)	1218
BbvI	GCAGC	4 cut(s)	1128, 1183, 1218, 1296
BccI	CCATC	2 cut(s)	988, 1073
BciT130I	CCWGG	4 cut(s)	982, 1014, 1026, 1276
BclI	TGATCA	1 cut(s)	201
BcnI	CCSGG	1 cut(s)	119
BcoDI	GTCTC	3 cut(s)	146, 594, 819
BisI	GCNGC	4 cut(s)	1117, 1172, 1207, 1285
BlsI	GCNGC	4 cut(s)	1118, 1173, 1208, 1286
Bme1390I	CCNGG	5 cut(s)	119, 982, 1014, 1026, 1276
Bme18I	GGWCC	2 cut(s)	225, 1278
BmeRI	GACNNNNNGTC	2 cut(s)	586, 1276
BmgT120I	GGNCC	3 cut(s)	225, 877, 1278
BmiI	GGNNCC	3 cut(s)	165, 226, 1180
BmrFI	CCNGG	5 cut(s)	119, 982, 1014, 1026, 1276
BmsI	GCATC	3 cut(s)	356, 360, 855
BpiI	GAAGAC	2 cut(s)	690, 1068
BpmI	CTGGAG	2 cut(s)	170, 1035
Bpu10I	CCTNAGC	3 cut(s)	374, 1128, 1218
BpuEI	CTTGAG	1 cut(s)	520
BpuMI	CCSGG	1 cut(s)	119
BsaI	GGTCTC	1 cut(s)	146
BsaJI	CCNNGG	6 cut(s)	117, 156, 561, 981, 1012, 1274
Bsc4I	CCNNNNNNNGG	2 cut(s)	173, 620
Bse1I	ACTGG	1 cut(s)	1101
Bse3DI	GCAATG	1 cut(s)	204
BseBI	CCWGG	4 cut(s)	982, 1014, 1026, 1276
BseDI	CCNNGG	6 cut(s)	117, 156, 561, 981, 1012, 1274
BseGI	GGATG	4 cut(s)	384, 870, 991, 999
BseLI	CCNNNNNNNGG	2 cut(s)	173, 620
BseMI	GCAATG	1 cut(s)	204
BseMII	CTCAG	8 cut(s)	35, 278, 342, 444, 830, 1035, 1142, 1209
BseNI	ACTGG	1 cut(s)	1101
BseRI	GAGGAG	3 cut(s)	176, 380, 648
BseXI	GCAGC	4 cut(s)	1128, 1183, 1218, 1296
Bsh1236I	CGCG	1 cut(s)	1050
BshFI	GGCC	3 cut(s)	143, 242, 878
BshNI	GGYRCC	1 cut(s)	1178
BsiHKAI	GWGCWC	1 cut(s)	55
BsiSI	CCGG	1 cut(s)	119
BslI	CCNNNNNNNGG	2 cut(s)	173, 620
BsmAI	GTCTC	3 cut(s)	146, 594, 819
BsnI	GGCC	3 cut(s)	143, 242, 878
Bso31I	GGTCTC	1 cut(s)	146
Bsp1286I	GDGCHC	1 cut(s)	55
Bsp143I	GATC	8 cut(s)	132, 201, 400, 457, 517, 757, 834, 906
Bsp19I	CCATGG	1 cut(s)	156
BspACI	CCGC	4 cut(s)	392, 584, 1125, 1262
BspANI	GGCC	3 cut(s)	143, 242, 878
BspCNI	CTCAG	8 cut(s)	34, 279, 343, 445, 829, 1036, 1141, 1210
BspFNI	CGCG	1 cut(s)	1050
BspHI	TCATGA	2 cut(s)	403, 577
BspLI	GGNNCC	3 cut(s)	165, 226, 1180
BspPI	GGATC	5 cut(s)	408, 465, 512, 752, 842
BspT107I	GGYRCC	1 cut(s)	1178
BspTNI	GGTCTC	1 cut(s)	146
BsrBI	CCGCTC	1 cut(s)	1127
BsrDI	GCAATG	1 cut(s)	204
BsrI	ACTGG	1 cut(s)	1101
BssECI	CCNNGG	6 cut(s)	117, 156, 561, 981, 1012, 1274
BssMI	GATC	8 cut(s)	132, 201, 400, 457, 517, 757, 834, 906
BssT1I	CCWWGG	2 cut(s)	156, 561
Bst2UI	CCWGG	4 cut(s)	982, 1014, 1026, 1276
Bst6I	CTCTTC	1 cut(s)	207
BstC8I	GCNNGC	2 cut(s)	108, 712
BstDEI	CTNAG	9 cut(s)	21, 287, 351, 374, 453, 816, 1044, 1128, 1218
BstDSI	CCRYGG	1 cut(s)	156
BstENI	CCTNNNNNAGG	1 cut(s)	618
BstF5I	GGATG	4 cut(s)	384, 870, 991, 999
BstFNI	CGCG	1 cut(s)	1050
BstHHI	GCGC	1 cut(s)	1050
BstKTI	GATC	8 cut(s)	135, 204, 403, 460, 520, 760, 837, 909
BstMAI	GTCTC	3 cut(s)	146, 594, 819
BstMBI	GATC	8 cut(s)	132, 201, 400, 457, 517, 757, 834, 906
BstMWI	GCNNNNNNNGC	1 cut(s)	550
BstNI	CCWGG	4 cut(s)	982, 1014, 1026, 1276
BstNSI	RCATGY	1 cut(s)	796
BstSCI	CCNGG	5 cut(s)	117, 980, 1012, 1024, 1274
BstUI	CGCG	1 cut(s)	1050
BstV1I	GCAGC	4 cut(s)	1128, 1183, 1218, 1296
BstV2I	GAAGAC	2 cut(s)	690, 1068
BstX2I	RGATCY	2 cut(s)	457, 757
BstYI	RGATCY	2 cut(s)	457, 757
BsuRI	GGCC	3 cut(s)	143, 242, 878
BtgI	CCRYGG	1 cut(s)	156
BtsCI	GGATG	4 cut(s)	384, 870, 991, 999
BtsI	GCAGTG	1 cut(s)	1198
BtsIMutI	CAGTG	3 cut(s)	1041, 1108, 1198
Cac8I	GCNNGC	2 cut(s)	108, 712
CaiI	CAGNNNCTG	1 cut(s)	286
CciI	TCATGA	2 cut(s)	403, 577
CfoI	GCGC	1 cut(s)	1050
Cfr13I	GGNCC	3 cut(s)	225, 877, 1278
Csp6I	GTAC	3 cut(s)	312, 611, 919
CviAII	CATG	6 cut(s)	157, 404, 578, 629, 793, 1076
CviQI	GTAC	3 cut(s)	312, 611, 919
DdeI	CTNAG	9 cut(s)	21, 287, 351, 374, 453, 816, 1044, 1128, 1218
DpnI	GATC	8 cut(s)	134, 203, 402, 459, 519, 759, 836, 908
DpnII	GATC	8 cut(s)	132, 201, 400, 457, 517, 757, 834, 906
DriI	GACNNNNNGTC	2 cut(s)	586, 1276
Eam1104I	CTCTTC	1 cut(s)	207
Eam1105I	GACNNNNNGTC	2 cut(s)	586, 1276
EarI	CTCTTC	1 cut(s)	207
Ecl136II	GAGCTC	1 cut(s)	53
Eco130I	CCWWGG	2 cut(s)	156, 561
Eco24I	GRGCYC	1 cut(s)	55
Eco31I	GGTCTC	1 cut(s)	146
Eco47I	GGWCC	2 cut(s)	225, 1278
Eco53kI	GAGCTC	1 cut(s)	53
Eco57I	CTGAAG	1 cut(s)	1221
EcoICRI	GAGCTC	1 cut(s)	53
EcoNI	CCTNNNNNAGG	1 cut(s)	618
EcoO109I	RGGNCCY	1 cut(s)	877
EcoRII	CCWGG	4 cut(s)	980, 1012, 1024, 1274
EcoT14I	CCWWGG	2 cut(s)	156, 561
EcoT38I	GRGCYC	1 cut(s)	55
ErhI	CCWWGG	2 cut(s)	156, 561
FaeI	CATG	6 cut(s)	160, 407, 581, 632, 796, 1079
FalI	AAGNNNNNCTT	2 cut(s)	684, 716
FatI	CATG	6 cut(s)	156, 403, 577, 628, 792, 1075
FauI	CCCGC	1 cut(s)	591
FauNDI	CATATG	1 cut(s)	571
FbaI	TGATCA	1 cut(s)	201
FblI	GTMKAC	1 cut(s)	557
Fnu4HI	GCNGC	4 cut(s)	1117, 1172, 1207, 1285
FokI	GGATG	4 cut(s)	391, 877, 998, 1006
FriOI	GRGCYC	1 cut(s)	55
Fsp4HI	GCNGC	4 cut(s)	1117, 1172, 1207, 1285
GlaI	GCGC	1 cut(s)	1049
GluI	GCNGC	4 cut(s)	1117, 1172, 1207, 1285
GsuI	CTGGAG	2 cut(s)	170, 1035
HaeIII	GGCC	3 cut(s)	143, 242, 878
HapII	CCGG	1 cut(s)	119
HhaI	GCGC	1 cut(s)	1050
Hin1II	CATG	6 cut(s)	160, 407, 581, 632, 796, 1079
Hin6I	GCGC	1 cut(s)	1048
HinP1I	GCGC	1 cut(s)	1048
HindIII	AAGCTT	1 cut(s)	933
HpaII	CCGG	1 cut(s)	119
HphI	GGTGA	2 cut(s)	286, 970
Hpy166II	GTNNAC	1 cut(s)	558
Hpy188I	TCNGA	6 cut(s)	229, 340, 352, 454, 762, 1201
Hpy188III	TCNNGA	6 cut(s)	149, 293, 404, 578, 890, 948
Hpy8I	GTNNAC	1 cut(s)	558
Hpy99I	CGWCG	1 cut(s)	140
HpyCH4V	TGCA	9 cut(s)	106, 197, 347, 427, 464, 553, 628, 807, 974
HpyF10VI	GCNNNNNNNGC	1 cut(s)	550
HpyF3I	CTNAG	9 cut(s)	21, 287, 351, 374, 453, 816, 1044, 1128, 1218
Hsp92II	CATG	6 cut(s)	160, 407, 581, 632, 796, 1079
HspAI	GCGC	1 cut(s)	1048
Ksp22I	TGATCA	1 cut(s)	201
Kzo9I	GATC	8 cut(s)	132, 201, 400, 457, 517, 757, 834, 906
LmnI	GCTCC	3 cut(s)	50, 163, 635
Lsp1109I	GCAGC	4 cut(s)	1128, 1183, 1218, 1296
LweI	GCATC	3 cut(s)	356, 360, 855
MalI	GATC	8 cut(s)	134, 203, 402, 459, 519, 759, 836, 908
MbiI	CCGCTC	1 cut(s)	1127
MboI	GATC	8 cut(s)	132, 201, 400, 457, 517, 757, 834, 906
MboII	GAAGA	9 cut(s)	224, 262, 265, 695, 788, 905, 935, 1073, 1158
MfeI	CAATTG	1 cut(s)	428
MflI	RGATCY	2 cut(s)	457, 757
MhlI	GDGCHC	1 cut(s)	55
MluCI	AATT	6 cut(s)	169, 181, 428, 926, 1096, 1292
MlyI	GAGTC	4 cut(s)	298, 458, 575, 821
MmeI	TCCRAC	5 cut(s)	282, 342, 925, 979, 1059
MseI	TTAA	5 cut(s)	38, 237, 660, 788, 828
MspA1I	CMGCKG	1 cut(s)	586
MspI	CCGG	1 cut(s)	119
MspR9I	CCNGG	5 cut(s)	119, 982, 1014, 1026, 1276
MunI	CAATTG	1 cut(s)	428
MvaI	CCWGG	4 cut(s)	982, 1014, 1026, 1276
MvnI	CGCG	1 cut(s)	1050
MwoI	GCNNNNNNNGC	1 cut(s)	550
NciI	CCSGG	1 cut(s)	119
NcoI	CCATGG	1 cut(s)	156
NdeI	CATATG	1 cut(s)	571
NdeII	GATC	8 cut(s)	132, 201, 400, 457, 517, 757, 834, 906
NlaIII	CATG	6 cut(s)	160, 407, 581, 632, 796, 1079
NlaIV	GGNNCC	3 cut(s)	165, 226, 1180
NspI	RCATGY	1 cut(s)	796
PagI	TCATGA	2 cut(s)	403, 577
PfeI	GAWTC	6 cut(s)	13, 100, 122, 951, 1163, 1256
PkrI	GCNGC	4 cut(s)	1118, 1173, 1208, 1286
PleI	GAGTC	4 cut(s)	297, 457, 574, 820
PpsI	GAGTC	4 cut(s)	297, 457, 574, 820
Psp124BI	GAGCTC	1 cut(s)	55
Psp6I	CCWGG	4 cut(s)	980, 1012, 1024, 1274
PspGI	CCWGG	4 cut(s)	980, 1012, 1024, 1274
PspN4I	GGNNCC	3 cut(s)	165, 226, 1180
PspPI	GGNCC	3 cut(s)	225, 877, 1278
PstNI	CAGNNNCTG	1 cut(s)	286
PsuI	RGATCY	2 cut(s)	457, 757
RsaI	GTAC	3 cut(s)	313, 612, 920
RsaNI	GTAC	3 cut(s)	312, 611, 919
SacI	GAGCTC	1 cut(s)	55
SaqAI	TTAA	5 cut(s)	38, 237, 660, 788, 828
SatI	GCNGC	4 cut(s)	1117, 1172, 1207, 1285
Sau3AI	GATC	8 cut(s)	132, 201, 400, 457, 517, 757, 834, 906
Sau96I	GGNCC	3 cut(s)	225, 877, 1278
SchI	GAGTC	4 cut(s)	298, 458, 575, 821
ScrFI	CCNGG	5 cut(s)	119, 982, 1014, 1026, 1276
SduI	GDGCHC	1 cut(s)	55
SfaNI	GCATC	3 cut(s)	356, 360, 855
SinI	GGWCC	2 cut(s)	225, 1278
SmlI	CTYRAG	1 cut(s)	499
SmoI	CTYRAG	1 cut(s)	499
Sse9I	AATT	6 cut(s)	169, 181, 428, 926, 1096, 1292
SsiI	CCGC	4 cut(s)	392, 584, 1125, 1262
SstI	GAGCTC	1 cut(s)	55
StyD4I	CCNGG	5 cut(s)	117, 980, 1012, 1024, 1274
StyI	CCWWGG	2 cut(s)	156, 561
TaqI	TCGA	2 cut(s)	64, 135
TasI	AATT	6 cut(s)	169, 181, 428, 926, 1096, 1292
TatI	WGTACW	1 cut(s)	311
TfiI	GAWTC	6 cut(s)	13, 100, 122, 951, 1163, 1256
Tru1I	TTAA	5 cut(s)	38, 237, 660, 788, 828
Tru9I	TTAA	5 cut(s)	38, 237, 660, 788, 828
TscAI	CASTG	3 cut(s)	1048, 1108, 1198
TseI	GCWGC	4 cut(s)	1116, 1171, 1206, 1284
TspDTI	ATGAA	9 cut(s)	98, 107, 194, 332, 420, 470, 566, 873, 1125
TspGWI	ACGGA	1 cut(s)	413
TspRI	CASTG	3 cut(s)	1048, 1108, 1198
VpaK11BI	GGWCC	2 cut(s)	225, 1278
XagI	CCTNNNNNAGG	1 cut(s)	618
XapI	RAATTY	2 cut(s)	181, 1096
XceI	RCATGY	1 cut(s)	796
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1076
XmiI	GTMKAC	1 cut(s)	557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.