Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013812

Physical Location & Seq

Genomic Coordinates Reverse (-)

1950596 .. 1952880

Gene Structure 2285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G06400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCTGGTTACAGAGCCGATGAAGAGTACGATTACCTCTTCAAGCTCGTGTTGATCGGCGACTCTGGTGTCGGCAAATCGAATCTGCTCTCTCGGTTCACCAAGAACGAGTTCAATCTCGAATCCAAGTCTACTATTGGTGTTGAGTTCGCTACCAAAACCACTAAAGTCGAAGGCAAAGTCGTCAAAGCTCAGATTTGGGATACTGCTGGTCAAGAGAGATACCGAGCAATCACAAGCGCTTATTACAGAGGAGCTGTTGGTGCTTTGCTTATTTACGACGTGACAAGGCACGCAACATTTGAGAATGCAGCAAGATGGCTAAGGGAACTAAGAGGACACACAGACCCAAACATAGTGGTGATGCTTATAGGGAACAAGTGCGATCTGCGTCACTTGGTGGCAGTCAAAACAGAAGAGGCTAAAGCCTTTGCTGAGAGAGAATCCCTCTATTTCATGGAGACTTCAGCTCTAGACGCAACCAATGTTGAAAACGCATTCACGGAAGTGCTCACTCAGATCCACAAGATAGTGAGCAAAAGAAGTGTTGATGGAGGAGGAGAGTCGGCTGATTTACCGGGAAAAGGAGAGACGATAAACGTTAAAGAAGACGGATCGGTTCTTAAGAGAATGGGTTGCTGCTCTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0006972 GO:0008104 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031090 GO:0031410 GO:0031982 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032879 GO:0033036 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042538 GO:0042546 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060627 GO:0065007 GO:0070727 GO:0071554 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0097708 GO:0098588 GO:0098805 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

216

Amino Acids

23.93

Weight (kDa)

6.45

Isoelectric Point (pI)

29.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	14 - 169	2.9e-12	ADP-ribosylation factor family
Ras	PF00071	15 - 175	3.6e-63	Ras family
Roc	PF08477	15 - 129	1.1e-34	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0013812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06400
fragaria_vesca	FvH4_6g27750
malus_domestica	MD09G1235000.v1.1 MD17G1264100.v1.1
prunus_persica	Prupe.3G113200_v2.0.a1
pyrus_communis	pycom09g15320 pycom17g26390
rosa_chinensis	RchiOBHm_Chr2g0130911
rosa_laevigata	RLG00000019158
rosa_multiflora	Rmu_sc0003629.1_g000032
rosa_roxburghii	Rroxscaffold_2G00113450
rosa_rugosa	Rorug02G0294000
rosa_samantha	Rh2AG345300 Rh2BG353700 Rh2CG332300 Rh2DG371800
rosa_wichuraiana	Rw2G028070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	68
AccI	GTMKAC	1 cut(s)	131
AclI	AACGTT	1 cut(s)	600
AclWI	GGATC	2 cut(s)	514, 622
AcuI	CTGAAG	1 cut(s)	450
AdeI	CACNNNGTG	1 cut(s)	400
AfaI	GTAC	1 cut(s)	29
AfeI	AGCGCT	1 cut(s)	241
AfiI	CCNNNNNNNGG	1 cut(s)	584
AflII	CTTAAG	1 cut(s)	623
AgsI	TTSAA	3 cut(s)	43, 115, 491
AjiI	CACGTC	1 cut(s)	283
AjuI	GAANNNNNNNTTGG	2 cut(s)	95, 127
AleI	CACNNNNGTG	1 cut(s)	506
AluBI	AGCT	4 cut(s)	46, 191, 257, 470
AluI	AGCT	4 cut(s)	46, 191, 257, 470
Alw21I	GWGCWC	1 cut(s)	513
Alw26I	GTCTC	2 cut(s)	455, 584
AlwI	GGATC	2 cut(s)	514, 622
Aor51HI	AGCGCT	1 cut(s)	241
ApeKI	GCWGC	2 cut(s)	311, 639
ArsI	GACNNNNNNTTYG	2 cut(s)	165, 197
Asp700I	GAANNNNTTC	1 cut(s)	110
AspLEI	GCGC	1 cut(s)	242
AsuC2I	CCSGG	1 cut(s)	579
AsuHPI	GGTGA	2 cut(s)	91, 373
BauI	CACGAG	1 cut(s)	47
BbsI	GAAGAC	1 cut(s)	615
Bbv12I	GWGCWC	1 cut(s)	513
BbvI	GCAGC	2 cut(s)	323, 626
BccI	CCATC	2 cut(s)	312, 545
BciVI	GTATCC	1 cut(s)	196
BcnI	CCSGG	1 cut(s)	579
BcoDI	GTCTC	2 cut(s)	455, 584
BfaI	CTAG	2 cut(s)	473, 649
BfoI	RGCGCY	1 cut(s)	243
BfrI	CTTAAG	1 cut(s)	623
BfuI	GTATCC	1 cut(s)	196
BisI	GCNGC	2 cut(s)	312, 640
BlsI	GCNGC	2 cut(s)	313, 641
Bme1390I	CCNGG	1 cut(s)	579
BmgBI	CACGTC	1 cut(s)	283
BmrFI	CCNGG	1 cut(s)	579
BmsI	GCATC	1 cut(s)	354
BpiI	GAAGAC	1 cut(s)	615
BplI	GAGNNNNNCTC	2 cut(s)	432, 464
Bpu10I	CCTNAGC	1 cut(s)	323
BpuMI	CCSGG	1 cut(s)	579
Bsc4I	CCNNNNNNNGG	1 cut(s)	584
BseLI	CCNNNNNNNGG	1 cut(s)	584
BseMII	CTCAG	3 cut(s)	206, 426, 530
BseRI	GAGGAG	3 cut(s)	267, 570, 573
BseXI	GCAGC	2 cut(s)	323, 626
BsiHKAI	GWGCWC	1 cut(s)	513
BsiSI	CCGG	1 cut(s)	578
BslI	CCNNNNNNNGG	1 cut(s)	584
BsmAI	GTCTC	2 cut(s)	455, 584
BsmBI	CGTCTC	1 cut(s)	584
BsmI	GAATGC	2 cut(s)	313, 497
Bsp1286I	GDGCHC	1 cut(s)	513
Bsp143I	GATC	4 cut(s)	54, 385, 519, 614
BspCNI	CTCAG	3 cut(s)	205, 427, 529
BspPI	GGATC	2 cut(s)	514, 622
BspTI	CTTAAG	1 cut(s)	623
BssMI	GATC	4 cut(s)	54, 385, 519, 614
BssSI	CACGAG	1 cut(s)	47
Bst2BI	CACGAG	1 cut(s)	47
Bst6I	CTCTTC	3 cut(s)	18, 44, 411
BstAFI	CTTAAG	1 cut(s)	623
BstC8I	GCNNGC	1 cut(s)	294
BstDEI	CTNAG	5 cut(s)	192, 323, 332, 435, 516
BstH2I	RGCGCY	1 cut(s)	243
BstHHI	GCGC	1 cut(s)	242
BstKTI	GATC	4 cut(s)	57, 388, 522, 617
BstMAI	GTCTC	2 cut(s)	455, 584
BstMBI	GATC	4 cut(s)	54, 385, 519, 614
BstMWI	GCNNNNNNNGC	2 cut(s)	263, 476
BstSCI	CCNGG	1 cut(s)	577
BstV1I	GCAGC	2 cut(s)	323, 626
BstV2I	GAAGAC	1 cut(s)	615
BstX2I	RGATCY	1 cut(s)	519
BstYI	RGATCY	1 cut(s)	519
BsuI	GTATCC	1 cut(s)	196
BtrI	CACGTC	1 cut(s)	283
Cac8I	GCNNGC	1 cut(s)	294
CfoI	GCGC	1 cut(s)	242
CseI	GACGC	2 cut(s)	380, 485
Csp6I	GTAC	1 cut(s)	28
CspCI	CAANNNNNGTGG	2 cut(s)	339, 374
CviAII	CATG	1 cut(s)	457
CviQI	GTAC	1 cut(s)	28
DdeI	CTNAG	5 cut(s)	192, 323, 332, 435, 516
DpnI	GATC	4 cut(s)	56, 387, 521, 616
DpnII	GATC	4 cut(s)	54, 385, 519, 614
DraIII	CACNNNGTG	1 cut(s)	400
DrdI	GACNNNNNNGTC	1 cut(s)	68
DseDI	GACNNNNNNGTC	1 cut(s)	68
Eam1104I	CTCTTC	3 cut(s)	18, 44, 411
EarI	CTCTTC	3 cut(s)	18, 44, 411
Eco47III	AGCGCT	1 cut(s)	241
Eco57I	CTGAAG	1 cut(s)	450
Esp3I	CGTCTC	1 cut(s)	584
FaeI	CATG	1 cut(s)	460
FaiI	YATR	3 cut(s)	356, 371, 458
FatI	CATG	1 cut(s)	456
FblI	GTMKAC	1 cut(s)	131
Fnu4HI	GCNGC	2 cut(s)	312, 640
Fsp4HI	GCNGC	2 cut(s)	312, 640
FspBI	CTAG	2 cut(s)	473, 649
GlaI	GCGC	1 cut(s)	241
GluI	GCNGC	2 cut(s)	312, 640
HaeII	RGCGCY	1 cut(s)	243
HapII	CCGG	1 cut(s)	578
HgaI	GACGC	2 cut(s)	380, 485
HhaI	GCGC	1 cut(s)	242
Hin1II	CATG	1 cut(s)	460
Hin6I	GCGC	1 cut(s)	240
HinP1I	GCGC	1 cut(s)	240
HinfI	GANTC	5 cut(s)	62, 82, 122, 443, 563
HpaII	CCGG	1 cut(s)	578
HphI	GGTGA	2 cut(s)	91, 373
Hpy166II	GTNNAC	2 cut(s)	99, 132
Hpy188I	TCNGA	2 cut(s)	195, 519
Hpy188III	TCNNGA	3 cut(s)	119, 215, 473
Hpy8I	GTNNAC	2 cut(s)	99, 132
Hpy99I	CGWCG	1 cut(s)	284
HpyAV	CCTTC	1 cut(s)	167
HpyCH4IV	ACGT	2 cut(s)	282, 600
HpyCH4V	TGCA	1 cut(s)	311
HpyF10VI	GCNNNNNNNGC	2 cut(s)	263, 476
HpyF3I	CTNAG	5 cut(s)	192, 323, 332, 435, 516
HpySE526I	ACGT	2 cut(s)	282, 600
Hsp92II	CATG	1 cut(s)	460
HspAI	GCGC	1 cut(s)	240
Kzo9I	GATC	4 cut(s)	54, 385, 519, 614
LmnI	GCTCC	1 cut(s)	254
LpnPI	CCDG	3 cut(s)	51, 195, 591
Lsp1109I	GCAGC	2 cut(s)	323, 626
LweI	GCATC	1 cut(s)	354
MaeI	CTAG	2 cut(s)	473, 649
MaeII	ACGT	2 cut(s)	282, 600
MaeIII	GTNAC	3 cut(s)	8, 283, 392
MalI	GATC	4 cut(s)	56, 387, 521, 616
MboI	GATC	4 cut(s)	54, 385, 519, 614
MboII	GAAGA	4 cut(s)	31, 35, 428, 620
MflI	RGATCY	1 cut(s)	519
MhlI	GDGCHC	1 cut(s)	513
MlyI	GAGTC	2 cut(s)	56, 572
MnlI	CCTC	7 cut(s)	47, 245, 329, 412, 458, 548, 551
MroXI	GAANNNNTTC	1 cut(s)	110
MseI	TTAA	2 cut(s)	603, 624
MslI	CAYNNNNRTG	2 cut(s)	359, 506
MspCI	CTTAAG	1 cut(s)	623
MspI	CCGG	1 cut(s)	578
MspR9I	CCNGG	1 cut(s)	579
Mva1269I	GAATGC	2 cut(s)	313, 497
MwoI	GCNNNNNNNGC	2 cut(s)	263, 476
NciI	CCSGG	1 cut(s)	579
NdeII	GATC	4 cut(s)	54, 385, 519, 614
NlaIII	CATG	1 cut(s)	460
NmuCI	GTSAC	2 cut(s)	283, 392
OliI	CACNNNNGTG	1 cut(s)	506
PctI	GAATGC	2 cut(s)	313, 497
PdmI	GAANNNNTTC	1 cut(s)	110
PfeI	GAWTC	3 cut(s)	82, 122, 443
PkrI	GCNGC	2 cut(s)	313, 641
PleI	GAGTC	2 cut(s)	56, 571
PpsI	GAGTC	2 cut(s)	56, 571
Psp1406I	AACGTT	1 cut(s)	600
PsuI	RGATCY	1 cut(s)	519
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
RseI	CAYNNNNRTG	2 cut(s)	359, 506
SaqAI	TTAA	2 cut(s)	603, 624
SatI	GCNGC	2 cut(s)	312, 640
Sau3AI	GATC	4 cut(s)	54, 385, 519, 614
SchI	GAGTC	2 cut(s)	56, 572
ScrFI	CCNGG	1 cut(s)	579
SduI	GDGCHC	1 cut(s)	513
SetI	ASST	7 cut(s)	39, 48, 193, 259, 285, 472, 603
SfaNI	GCATC	1 cut(s)	354
SmiMI	CAYNNNNRTG	2 cut(s)	359, 506
SmlI	CTYRAG	1 cut(s)	623
SmoI	CTYRAG	1 cut(s)	623
SspMI	CTAG	2 cut(s)	473, 649
StyD4I	CCNGG	1 cut(s)	577
TaiI	ACGT	2 cut(s)	285, 603
TaqI	TCGA	3 cut(s)	80, 120, 171
TfiI	GAWTC	3 cut(s)	82, 122, 443
Tru1I	TTAA	2 cut(s)	603, 624
Tru9I	TTAA	2 cut(s)	603, 624
TseFI	GTSAC	2 cut(s)	283, 392
TseI	GCWGC	2 cut(s)	311, 639
Tsp45I	GTSAC	2 cut(s)	283, 392
TspDTI	ATGAA	2 cut(s)	36, 445
TspGWI	ACGGA	2 cut(s)	518, 627
Vha464I	CTTAAG	1 cut(s)	623
XbaI	TCTAGA	1 cut(s)	472
XmiI	GTMKAC	1 cut(s)	131
XmnI	GAANNNNTTC	1 cut(s)	110
XspI	CTAG	2 cut(s)	473, 649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.