Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0013812

Physical Location & Seq

Genomic Coordinates Forward (+)

39043598 .. 39048342

Gene Structure 4745 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00113450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGCTGGGTACAGAGCTGACGACGAGTATGATTACCTCTTCAAGCTCGTTTTGATCGGCGACTCCGGCGTCGGCAAATCCAACCTCCTCTCCAGGTTCACCAGGAACGAGTTCAATTTGGAGTCCAAGTCTACTATTGGGGTTGAGTTTGCCACCAAGACTTTGAGCGTTGATGGCAAAGTCGTTAAGGCTCAGATTTGGGACACTGCTGGCCAGGAGAGATACCGTGCCATTACAAGTGCCTACTACCGAGGAGCTGTTGGTGCTTTGCTAGTGTATGATGTCACTCGGCGTGCGACATTTGAGAATGTAGCAAGGTGGTTGAAGGAGCTGAGGGATCACACGGACCCCAACATTGTAGTCATGCTCATTGGCAACAAATCAGATCTTCGTCACCTGGTGGCAGTCTCTAAAGAGGATGGCAAATCTTTTGCTGAAAGAGAGTCACTTTACTTCATGGAAACTTCAGCATTGGAGGCAACCAATGTGGAAAATGCATTTACCGAAATCTTGGGTCAAATATACCGGGTTGTAAGCAAGAGGGCGGTCGAGGCAGGCGACAATGGCAGTGCTTCTGCAGTACCTTCCAAAGGACAGACCATAAATGTCAAAGATGATGGCTCTGTTTTGAAGCGATTTGGATGCTGCTCAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031410 GO:0031982 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0042221 GO:0042546 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071554 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0097708 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

218

Amino Acids

24.11

Weight (kDa)

6.76

Isoelectric Point (pI)

23.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	14 - 169	1.5e-12	ADP-ribosylation factor family
Ras	PF00071	15 - 175	2.2e-63	Ras family
Roc	PF08477	15 - 129	5.4e-35	Ras of Complex, Roc, domain of DAPkinase
MMR_HSR1	PF01926	16 - 121	7.7e-06	50S ribosome-binding GTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06400
fragaria_vesca	FvH4_6g27750
malus_domestica	MD09G1235000.v1.1 MD17G1264100.v1.1
prunus_persica	Prupe.3G113200_v2.0.a1
pyrus_communis	pycom09g15320 pycom17g26390
rosa_chinensis	RchiOBHm_Chr2g0130911
rosa_laevigata	RLG00000019158
rosa_multiflora	Rmu_sc0003629.1_g000032
rosa_roxburghii	Rroxscaffold_2G00113450
rosa_rugosa	Rorug02G0294000
rosa_samantha	Rh2AG345300 Rh2BG353700 Rh2CG332300 Rh2DG371800
rosa_wichuraiana	Rw2G028070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	68
AccI	GTMKAC	1 cut(s)	131
AciI	CCGC	1 cut(s)	545
AclWI	GGATC	1 cut(s)	345
AcoI	YGGCCR	1 cut(s)	211
AcuI	CTGAAG	1 cut(s)	450
AcyI	GRCGYC	1 cut(s)	69
AdeI	CACNNNGTG	1 cut(s)	400
AfaI	GTAC	2 cut(s)	11, 582
AfiI	CCNNNNNNNGG	1 cut(s)	590
AgsI	TTSAA	4 cut(s)	43, 115, 325, 631
AjnI	CCWGG	4 cut(s)	92, 101, 213, 396
AluBI	AGCT	4 cut(s)	17, 46, 257, 331
AluI	AGCT	4 cut(s)	17, 46, 257, 331
Alw26I	GTCTC	1 cut(s)	412
AlwI	GGATC	1 cut(s)	345
AoxI	GGCC	1 cut(s)	211
ApeKI	GCWGC	1 cut(s)	645
Asp700I	GAANNNNTTC	1 cut(s)	110
AspS9I	GGNCC	1 cut(s)	346
AsuC2I	CCSGG	1 cut(s)	527
AsuHPI	GGTGA	2 cut(s)	91, 386
AvaII	GGWCC	1 cut(s)	346
BalI	TGGCCA	1 cut(s)	213
BbvCI	CCTCAGC	1 cut(s)	332
BbvI	GCAGC	1 cut(s)	632
BccI	CCATC	3 cut(s)	167, 413, 611
BcgI	CGANNNNNNTGC	1 cut(s)	624
BciT130I	CCWGG	4 cut(s)	94, 103, 215, 398
BcnI	CCSGG	1 cut(s)	527
BcoDI	GTCTC	1 cut(s)	412
BfaI	CTAG	2 cut(s)	272, 655
BfmI	CTRYAG	1 cut(s)	576
BglII	AGATCT	1 cut(s)	385
BisI	GCNGC	1 cut(s)	646
BlsI	GCNGC	1 cut(s)	647
Bme1390I	CCNGG	5 cut(s)	94, 103, 215, 398, 527
Bme18I	GGWCC	1 cut(s)	346
BmgT120I	GGNCC	1 cut(s)	346
BmiI	GGNNCC	1 cut(s)	348
BmrFI	CCNGG	5 cut(s)	94, 103, 215, 398, 527
BmsI	GCATC	1 cut(s)	632
BpmI	CTGGAG	1 cut(s)	76
Bpu10I	CCTNAGC	1 cut(s)	332
BpuMI	CCSGG	1 cut(s)	527
BsaHI	GRCGYC	1 cut(s)	69
BsaJI	CCNNGG	1 cut(s)	250
BsaXI	ACNNNNNCTCC	4 cut(s)	74, 104, 113, 143
Bsc4I	CCNNNNNNNGG	1 cut(s)	590
BseBI	CCWGG	4 cut(s)	94, 103, 215, 398
BseDI	CCNNGG	1 cut(s)	250
BseGI	GGATG	2 cut(s)	424, 647
BseLI	CCNNNNNNNGG	1 cut(s)	590
BseMII	CTCAG	2 cut(s)	206, 323
BseRI	GAGGAG	2 cut(s)	77, 267
BseXI	GCAGC	1 cut(s)	632
BseYI	CCCAGC	1 cut(s)	5
Bsh1285I	CGRYCG	1 cut(s)	549
BshFI	GGCC	1 cut(s)	213
BsiEI	CGRYCG	1 cut(s)	549
BsiSI	CCGG	2 cut(s)	66, 526
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	1 cut(s)	590
BsmAI	GTCTC	1 cut(s)	412
BsmFI	GGGAC	1 cut(s)	215
BsnI	GGCC	1 cut(s)	213
Bsp143I	GATC	3 cut(s)	54, 337, 385
BspACI	CCGC	1 cut(s)	545
BspANI	GGCC	1 cut(s)	213
BspCNI	CTCAG	2 cut(s)	205, 324
BspLI	GGNNCC	1 cut(s)	348
BspMAI	CTGCAG	1 cut(s)	580
BspPI	GGATC	1 cut(s)	345
BssECI	CCNNGG	1 cut(s)	250
BssMI	GATC	3 cut(s)	54, 337, 385
BssNI	GRCGYC	1 cut(s)	69
Bst2UI	CCWGG	4 cut(s)	94, 103, 215, 398
Bst4CI	ACNGT	1 cut(s)	227
Bst6I	CTCTTC	1 cut(s)	44
BstACI	GRCGYC	1 cut(s)	69
BstC8I	GCNNGC	3 cut(s)	211, 294, 556
BstDEI	CTNAG	2 cut(s)	192, 332
BstENI	CCTNNNNNAGG	1 cut(s)	588
BstF5I	GGATG	2 cut(s)	424, 647
BstKTI	GATC	3 cut(s)	57, 340, 388
BstMAI	GTCTC	1 cut(s)	412
BstMBI	GATC	3 cut(s)	54, 337, 385
BstMCI	CGRYCG	1 cut(s)	549
BstMWI	GCNNNNNNNGC	6 cut(s)	66, 174, 263, 476, 551, 564
BstNI	CCWGG	4 cut(s)	94, 103, 215, 398
BstSCI	CCNGG	5 cut(s)	92, 101, 213, 396, 525
BstSFI	CTRYAG	1 cut(s)	576
BstV1I	GCAGC	1 cut(s)	632
BstX2I	RGATCY	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	385
BsuRI	GGCC	1 cut(s)	213
BtsCI	GGATG	2 cut(s)	424, 647
BtsI	GCAGTG	2 cut(s)	204, 574
BtsIMutI	CAGTG	2 cut(s)	204, 574
Cac8I	GCNNGC	3 cut(s)	211, 294, 556
Cfr13I	GGNCC	1 cut(s)	346
CseI	GACGC	1 cut(s)	58
CsiI	ACCWGGT	1 cut(s)	396
Csp6I	GTAC	2 cut(s)	10, 581
CspCI	CAANNNNNGTGG	2 cut(s)	468, 503
CviAII	CATG	2 cut(s)	364, 457
CviJI	RGCY	8 cut(s)	5, 17, 46, 191, 213, 257, 331, 621
CviKI_1	RGCY	8 cut(s)	5, 17, 46, 191, 213, 257, 331, 621
CviQI	GTAC	2 cut(s)	10, 581
DdeI	CTNAG	2 cut(s)	192, 332
DpnI	GATC	3 cut(s)	56, 339, 387
DpnII	GATC	3 cut(s)	54, 337, 385
DraIII	CACNNNGTG	1 cut(s)	400
DrdI	GACNNNNNNGTC	1 cut(s)	68
DseDI	GACNNNNNNGTC	1 cut(s)	68
EaeI	YGGCCR	1 cut(s)	211
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
Eco47I	GGWCC	1 cut(s)	346
Eco57I	CTGAAG	1 cut(s)	450
EcoNI	CCTNNNNNAGG	1 cut(s)	588
EcoRII	CCWGG	4 cut(s)	92, 101, 213, 396
EcoT22I	ATGCAT	1 cut(s)	499
FaeI	CATG	2 cut(s)	367, 460
FaiI	YATR	6 cut(s)	30, 279, 365, 458, 523, 602
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	2 cut(s)	363, 456
FblI	GTMKAC	1 cut(s)	131
Fnu4HI	GCNGC	1 cut(s)	646
FokI	GGATG	1 cut(s)	431
Fsp4HI	GCNGC	1 cut(s)	646
FspBI	CTAG	2 cut(s)	272, 655
GluI	GCNGC	1 cut(s)	646
GsaI	CCCAGC	1 cut(s)	9
GsuI	CTGGAG	1 cut(s)	76
HaeIII	GGCC	1 cut(s)	213
HapII	CCGG	2 cut(s)	66, 526
HgaI	GACGC	1 cut(s)	58
Hin1I	GRCGYC	1 cut(s)	69
Hin1II	CATG	2 cut(s)	367, 460
HinfI	GANTC	3 cut(s)	62, 122, 443
HpaII	CCGG	2 cut(s)	66, 526
HphI	GGTGA	2 cut(s)	91, 386
Hpy166II	GTNNAC	2 cut(s)	99, 132
Hpy188I	TCNGA	2 cut(s)	195, 385
Hpy8I	GTNNAC	2 cut(s)	99, 132
Hpy99I	CGWCG	2 cut(s)	26, 74
HpyAV	CCTTC	2 cut(s)	319, 594
HpyCH4III	ACNGT	1 cut(s)	227
HpyCH4V	TGCA	2 cut(s)	497, 578
HpyF10VI	GCNNNNNNNGC	6 cut(s)	66, 174, 263, 476, 551, 564
HpyF3I	CTNAG	2 cut(s)	192, 332
Hsp92I	GRCGYC	1 cut(s)	69
Hsp92II	CATG	2 cut(s)	367, 460
Kzo9I	GATC	3 cut(s)	54, 337, 385
LmnI	GCTCC	2 cut(s)	254, 328
Lsp1109I	GCAGC	1 cut(s)	632
LweI	GCATC	1 cut(s)	632
MabI	ACCWGGT	1 cut(s)	396
MaeI	CTAG	2 cut(s)	272, 655
MaeIII	GTNAC	3 cut(s)	283, 392, 444
MalI	GATC	3 cut(s)	56, 339, 387
MboI	GATC	3 cut(s)	54, 337, 385
MboII	GAAGA	2 cut(s)	31, 380
MflI	RGATCY	1 cut(s)	385
MlsI	TGGCCA	1 cut(s)	213
MluCI	AATT	1 cut(s)	115
MluNI	TGGCCA	1 cut(s)	213
MlyI	GAGTC	3 cut(s)	56, 131, 452
MmeI	TCCRAC	1 cut(s)	105
MnlI	CCTC	9 cut(s)	47, 95, 98, 245, 327, 409, 469, 534, 544
Mox20I	TGGCCA	1 cut(s)	213
Mph1103I	ATGCAT	1 cut(s)	499
MroXI	GAANNNNTTC	1 cut(s)	110
MscI	TGGCCA	1 cut(s)	213
MseI	TTAA	1 cut(s)	186
Msp20I	TGGCCA	1 cut(s)	213
MspI	CCGG	2 cut(s)	66, 526
MspR9I	CCNGG	5 cut(s)	94, 103, 215, 398, 527
MvaI	CCWGG	4 cut(s)	94, 103, 215, 398
MwoI	GCNNNNNNNGC	6 cut(s)	66, 174, 263, 476, 551, 564
NciI	CCSGG	1 cut(s)	527
NdeII	GATC	3 cut(s)	54, 337, 385
NlaIII	CATG	2 cut(s)	367, 460
NlaIV	GGNNCC	1 cut(s)	348
NmeAIII	GCCGAG	1 cut(s)	268
NmuCI	GTSAC	3 cut(s)	283, 392, 444
NsiI	ATGCAT	1 cut(s)	499
PcsI	WCGNNNNNNNCGW	1 cut(s)	555
PdmI	GAANNNNTTC	1 cut(s)	110
PkrI	GCNGC	1 cut(s)	647
PleI	GAGTC	3 cut(s)	56, 130, 451
PpsI	GAGTC	3 cut(s)	56, 130, 451
Psp6I	CCWGG	4 cut(s)	92, 101, 213, 396
PspFI	CCCAGC	1 cut(s)	5
PspGI	CCWGG	4 cut(s)	92, 101, 213, 396
PspN4I	GGNNCC	1 cut(s)	348
PspPI	GGNCC	1 cut(s)	346
PstI	CTGCAG	1 cut(s)	580
PsuI	RGATCY	1 cut(s)	385
RsaI	GTAC	2 cut(s)	11, 582
RsaNI	GTAC	2 cut(s)	10, 581
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	1 cut(s)	646
Sau3AI	GATC	3 cut(s)	54, 337, 385
Sau96I	GGNCC	1 cut(s)	346
SchI	GAGTC	3 cut(s)	56, 131, 452
ScrFI	CCNGG	5 cut(s)	94, 103, 215, 398, 527
SexAI	ACCWGGT	1 cut(s)	396
SfaNI	GCATC	1 cut(s)	632
SfcI	CTRYAG	1 cut(s)	576
SinI	GGWCC	1 cut(s)	346
Sse9I	AATT	1 cut(s)	115
SsiI	CCGC	1 cut(s)	545
SspMI	CTAG	2 cut(s)	272, 655
StyD4I	CCNGG	5 cut(s)	92, 101, 213, 396, 525
TaaI	ACNGT	1 cut(s)	227
TaqI	TCGA	1 cut(s)	549
TasI	AATT	1 cut(s)	115
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TscAI	CASTG	2 cut(s)	211, 574
TseFI	GTSAC	3 cut(s)	283, 392, 444
TseI	GCWGC	1 cut(s)	645
Tsp45I	GTSAC	3 cut(s)	283, 392, 444
TspDTI	ATGAA	1 cut(s)	445
TspGWI	ACGGA	1 cut(s)	359
TspRI	CASTG	2 cut(s)	211, 574
VpaK11BI	GGWCC	1 cut(s)	346
XagI	CCTNNNNNAGG	1 cut(s)	588
XmiI	GTMKAC	1 cut(s)	131
XmnI	GAANNNNTTC	1 cut(s)	110
XspI	CTAG	2 cut(s)	272, 655
Zsp2I	ATGCAT	1 cut(s)	499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.