Rab subfamily of small GTPases
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G06400 |
| fragaria_vesca | FvH4_6g27750 |
| malus_domestica | MD09G1235000.v1.1 MD17G1264100.v1.1 |
| prunus_persica | Prupe.3G113200_v2.0.a1 |
| pyrus_communis | pycom09g15320 pycom17g26390 |
| rosa_chinensis | RchiOBHm_Chr2g0130911 |
| rosa_laevigata | RLG00000019158 |
| rosa_multiflora | Rmu_sc0003629.1_g000032 |
| rosa_roxburghii | Rroxscaffold_2G00113450 |
| rosa_rugosa | Rorug02G0294000 |
| rosa_samantha | Rh2AG345300 Rh2BG353700 Rh2CG332300 Rh2DG371800 |
| rosa_wichuraiana | Rw2G028070 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 93 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 400 |
| AccI | GTMKAC | 1 cut(s) | 131 |
| AclI | AACGTT | 1 cut(s) | 168 |
| AcoI | YGGCCR | 2 cut(s) | 211, 402 |
| AcuI | CTGAAG | 1 cut(s) | 525 |
| AfaI | GTAC | 1 cut(s) | 11 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 400, 590 |
| AgsI | TTSAA | 2 cut(s) | 43, 325 |
| AjnI | CCWGG | 1 cut(s) | 92 |
| AluBI | AGCT | 4 cut(s) | 17, 46, 257, 331 |
| AluI | AGCT | 4 cut(s) | 17, 46, 257, 331 |
| Alw26I | GTCTC | 1 cut(s) | 412 |
| Ama87I | CYCGRG | 1 cut(s) | 288 |
| AoxI | GGCC | 2 cut(s) | 211, 402 |
| ApeKI | GCWGC | 1 cut(s) | 645 |
| AspS9I | GGNCC | 1 cut(s) | 337 |
| AsuC2I | CCSGG | 1 cut(s) | 527 |
| AsuHPI | GGTGA | 1 cut(s) | 71 |
| AvaI | CYCGRG | 1 cut(s) | 288 |
| AvaII | GGWCC | 1 cut(s) | 337 |
| BalI | TGGCCA | 1 cut(s) | 213 |
| BauI | CACGAG | 1 cut(s) | 100 |
| BbvCI | CCTCAGC | 1 cut(s) | 332 |
| BbvI | GCAGC | 1 cut(s) | 632 |
| BccI | CCATC | 3 cut(s) | 167, 402, 413 |
| BceAI | ACGGC | 1 cut(s) | 389 |
| BciT130I | CCWGG | 1 cut(s) | 94 |
| BcnI | CCSGG | 1 cut(s) | 527 |
| BcoDI | GTCTC | 1 cut(s) | 412 |
| BfaI | CTAG | 2 cut(s) | 272, 655 |
| BfuAI | ACCTGC | 1 cut(s) | 93 |
| BglII | AGATCT | 1 cut(s) | 385 |
| BisI | GCNGC | 1 cut(s) | 646 |
| BlsI | GCNGC | 1 cut(s) | 647 |
| Bme1390I | CCNGG | 2 cut(s) | 94, 527 |
| Bme18I | GGWCC | 1 cut(s) | 337 |
| BmeT110I | CYCGRG | 1 cut(s) | 288 |
| BmgT120I | GGNCC | 1 cut(s) | 337 |
| BmiI | GGNNCC | 2 cut(s) | 295, 338 |
| BmrFI | CCNGG | 2 cut(s) | 94, 527 |
| BmsI | GCATC | 1 cut(s) | 632 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 432, 464 |
| BpmI | CTGGAG | 1 cut(s) | 140 |
| Bpu10I | CCTNAGC | 1 cut(s) | 332 |
| BpuMI | CCSGG | 1 cut(s) | 527 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 113, 143 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 400, 590 |
| BseBI | CCWGG | 1 cut(s) | 94 |
| BseGI | GGATG | 2 cut(s) | 424, 647 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 400, 590 |
| BseMII | CTCAG | 2 cut(s) | 206, 323 |
| BseRI | GAGGAG | 1 cut(s) | 267 |
| BseXI | GCAGC | 1 cut(s) | 632 |
| BseYI | CCCAGC | 1 cut(s) | 5 |
| BshFI | GGCC | 2 cut(s) | 213, 404 |
| BsiHKCI | CYCGRG | 1 cut(s) | 288 |
| BsiSI | CCGG | 1 cut(s) | 526 |
| BslFI | GGGAC | 3 cut(s) | 215, 350, 430 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 400, 590 |
| BsmAI | GTCTC | 1 cut(s) | 412 |
| BsmBI | CGTCTC | 1 cut(s) | 412 |
| BsmFI | GGGAC | 3 cut(s) | 215, 350, 430 |
| BsnI | GGCC | 2 cut(s) | 213, 404 |
| BsoBI | CYCGRG | 1 cut(s) | 288 |
| Bsp143I | GATC | 1 cut(s) | 385 |
| BspANI | GGCC | 2 cut(s) | 213, 404 |
| BspCNI | CTCAG | 2 cut(s) | 205, 324 |
| BspLI | GGNNCC | 2 cut(s) | 295, 338 |
| BspMI | ACCTGC | 1 cut(s) | 93 |
| BssMI | GATC | 1 cut(s) | 385 |
| BssSI | CACGAG | 1 cut(s) | 100 |
| Bst2BI | CACGAG | 1 cut(s) | 100 |
| Bst2UI | CCWGG | 1 cut(s) | 94 |
| BstC8I | GCNNGC | 2 cut(s) | 211, 556 |
| BstDEI | CTNAG | 2 cut(s) | 192, 332 |
| BstF5I | GGATG | 2 cut(s) | 424, 647 |
| BstKTI | GATC | 1 cut(s) | 388 |
| BstMAI | GTCTC | 1 cut(s) | 412 |
| BstMBI | GATC | 1 cut(s) | 385 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 263, 476, 551 |
| BstNI | CCWGG | 1 cut(s) | 94 |
| BstSCI | CCNGG | 2 cut(s) | 92, 525 |
| BstV1I | GCAGC | 1 cut(s) | 632 |
| BstX2I | RGATCY | 1 cut(s) | 385 |
| BstYI | RGATCY | 1 cut(s) | 385 |
| BsuRI | GGCC | 2 cut(s) | 213, 404 |
| BtsCI | GGATG | 2 cut(s) | 424, 647 |
| BtsI | GCAGTG | 1 cut(s) | 204 |
| BtsIMutI | CAGTG | 1 cut(s) | 204 |
| BveI | ACCTGC | 1 cut(s) | 93 |
| Cac8I | GCNNGC | 2 cut(s) | 211, 556 |
| Cfr13I | GGNCC | 1 cut(s) | 337 |
| Csp6I | GTAC | 1 cut(s) | 10 |
| CviAII | CATG | 2 cut(s) | 364, 457 |
| CviQI | GTAC | 1 cut(s) | 10 |
| DdeI | CTNAG | 2 cut(s) | 192, 332 |
| DpnI | GATC | 1 cut(s) | 387 |
| DpnII | GATC | 1 cut(s) | 385 |
| EaeI | YGGCCR | 2 cut(s) | 211, 402 |
| Eco32I | GATATC | 1 cut(s) | 224 |
| Eco47I | GGWCC | 1 cut(s) | 337 |
| Eco57I | CTGAAG | 1 cut(s) | 525 |
| Eco88I | CYCGRG | 1 cut(s) | 288 |
| EcoRII | CCWGG | 1 cut(s) | 92 |
| EcoRV | GATATC | 1 cut(s) | 224 |
| EcoT22I | ATGCAT | 1 cut(s) | 499 |
| Esp3I | CGTCTC | 1 cut(s) | 412 |
| FaeI | CATG | 2 cut(s) | 367, 460 |
| FaiI | YATR | 9 cut(s) | 30, 164, 244, 279, 342, 365, 458, 523, 602 |
| FaqI | GGGAC | 3 cut(s) | 215, 350, 430 |
| FatI | CATG | 2 cut(s) | 363, 456 |
| FblI | GTMKAC | 1 cut(s) | 131 |
| Fnu4HI | GCNGC | 1 cut(s) | 646 |
| FokI | GGATG | 1 cut(s) | 431 |
| Fsp4HI | GCNGC | 1 cut(s) | 646 |
| FspBI | CTAG | 2 cut(s) | 272, 655 |
| GluI | GCNGC | 1 cut(s) | 646 |
| GsaI | CCCAGC | 1 cut(s) | 9 |
| GsuI | CTGGAG | 1 cut(s) | 140 |
| HaeIII | GGCC | 2 cut(s) | 213, 404 |
| HapII | CCGG | 1 cut(s) | 526 |
| Hin1II | CATG | 2 cut(s) | 367, 460 |
| HinfI | GANTC | 5 cut(s) | 62, 122, 286, 443, 514 |
| HpaII | CCGG | 1 cut(s) | 526 |
| HphI | GGTGA | 1 cut(s) | 71 |
| Hpy166II | GTNNAC | 2 cut(s) | 99, 132 |
| Hpy188I | TCNGA | 2 cut(s) | 195, 385 |
| Hpy188III | TCNNGA | 3 cut(s) | 100, 119, 511 |
| Hpy8I | GTNNAC | 2 cut(s) | 99, 132 |
| HpyAV | CCTTC | 1 cut(s) | 319 |
| HpyCH4IV | ACGT | 1 cut(s) | 168 |
| HpyCH4V | TGCA | 3 cut(s) | 242, 470, 497 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 263, 476, 551 |
| HpyF3I | CTNAG | 2 cut(s) | 192, 332 |
| HpySE526I | ACGT | 1 cut(s) | 168 |
| Hsp92II | CATG | 2 cut(s) | 367, 460 |
| Kzo9I | GATC | 1 cut(s) | 385 |
| LmnI | GCTCC | 3 cut(s) | 254, 293, 328 |
| Lsp1109I | GCAGC | 1 cut(s) | 632 |
| LweI | GCATC | 1 cut(s) | 632 |
| MaeI | CTAG | 2 cut(s) | 272, 655 |
| MaeII | ACGT | 1 cut(s) | 168 |
| MaeIII | GTNAC | 1 cut(s) | 283 |
| MalI | GATC | 1 cut(s) | 387 |
| MboI | GATC | 1 cut(s) | 385 |
| MboII | GAAGA | 1 cut(s) | 380 |
| MflI | RGATCY | 1 cut(s) | 385 |
| MlsI | TGGCCA | 1 cut(s) | 213 |
| MluCI | AATT | 2 cut(s) | 183, 636 |
| MluNI | TGGCCA | 1 cut(s) | 213 |
| MlyI | GAGTC | 4 cut(s) | 131, 280, 452, 508 |
| MnlI | CCTC | 7 cut(s) | 96, 245, 327, 409, 458, 534, 544 |
| Mox20I | TGGCCA | 1 cut(s) | 213 |
| Mph1103I | ATGCAT | 1 cut(s) | 499 |
| MscI | TGGCCA | 1 cut(s) | 213 |
| MseI | TTAA | 3 cut(s) | 114, 186, 630 |
| Msp20I | TGGCCA | 1 cut(s) | 213 |
| MspI | CCGG | 1 cut(s) | 526 |
| MspR9I | CCNGG | 2 cut(s) | 94, 527 |
| MvaI | CCWGG | 1 cut(s) | 94 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 263, 476, 551 |
| NciI | CCSGG | 1 cut(s) | 527 |
| NdeII | GATC | 1 cut(s) | 385 |
| NlaIII | CATG | 2 cut(s) | 367, 460 |
| NlaIV | GGNNCC | 2 cut(s) | 295, 338 |
| NmuCI | GTSAC | 1 cut(s) | 283 |
| NsiI | ATGCAT | 1 cut(s) | 499 |
| PfeI | GAWTC | 1 cut(s) | 62 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 400 |
| PkrI | GCNGC | 1 cut(s) | 647 |
| PleI | GAGTC | 4 cut(s) | 130, 280, 451, 508 |
| PpsI | GAGTC | 4 cut(s) | 130, 280, 451, 508 |
| Psp1406I | AACGTT | 1 cut(s) | 168 |
| Psp6I | CCWGG | 1 cut(s) | 92 |
| PspFI | CCCAGC | 1 cut(s) | 5 |
| PspGI | CCWGG | 1 cut(s) | 92 |
| PspN4I | GGNNCC | 2 cut(s) | 295, 338 |
| PspPI | GGNCC | 1 cut(s) | 337 |
| PsuI | RGATCY | 1 cut(s) | 385 |
| RsaI | GTAC | 1 cut(s) | 11 |
| RsaNI | GTAC | 1 cut(s) | 10 |
| SaqAI | TTAA | 3 cut(s) | 114, 186, 630 |
| SatI | GCNGC | 1 cut(s) | 646 |
| Sau3AI | GATC | 1 cut(s) | 385 |
| Sau96I | GGNCC | 1 cut(s) | 337 |
| SchI | GAGTC | 4 cut(s) | 131, 280, 452, 508 |
| ScrFI | CCNGG | 2 cut(s) | 94, 527 |
| SetI | ASST | 8 cut(s) | 19, 48, 87, 98, 171, 259, 320, 333 |
| SfaNI | GCATC | 1 cut(s) | 632 |
| SinI | GGWCC | 1 cut(s) | 337 |
| Sse9I | AATT | 2 cut(s) | 183, 636 |
| SspMI | CTAG | 2 cut(s) | 272, 655 |
| StyD4I | CCNGG | 2 cut(s) | 92, 525 |
| TaiI | ACGT | 1 cut(s) | 171 |
| TaqI | TCGA | 2 cut(s) | 226, 250 |
| TasI | AATT | 2 cut(s) | 183, 636 |
| TfiI | GAWTC | 1 cut(s) | 62 |
| Tru1I | TTAA | 3 cut(s) | 114, 186, 630 |
| Tru9I | TTAA | 3 cut(s) | 114, 186, 630 |
| TscAI | CASTG | 1 cut(s) | 211 |
| TseFI | GTSAC | 1 cut(s) | 283 |
| TseI | GCWGC | 1 cut(s) | 645 |
| Tsp45I | GTSAC | 1 cut(s) | 283 |
| TspDTI | ATGAA | 2 cut(s) | 179, 445 |
| TspGWI | ACGGA | 2 cut(s) | 573, 579 |
| TspRI | CASTG | 1 cut(s) | 211 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 400 |
| VpaK11BI | GGWCC | 1 cut(s) | 337 |
| XmiI | GTMKAC | 1 cut(s) | 131 |
| XspI | CTAG | 2 cut(s) | 272, 655 |
| Zsp2I | ATGCAT | 1 cut(s) | 499 |