pycom09g15320

Ras-related protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Forward (+)
15182220 .. 15186730
4511 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g15320.2

Sequence Viewer

Length: 657 bp
ATGGCGGGATACAAAGGTGACGACGAGTATGATTACTTGTTCAAGCTGGTATTGATTGGGGATTCTGGGGTGGGAAAATCGAACCTGCTTTCCAGGTTCACCAGGAACGAGTTTAATTTGGAGTCCAAGTCAACTATCGGGGTTGAATTTGCCACTAAAACTTTGACTGTTGATGCCAAGCTCATCAAAGCTCAGATTTGGGACACTGCTGGCCAAGAAAGGTACCGTGCCATTACAAGCGCATACTACCGAGGGGCCGTTGGTGCTTTGCTAGTGTATGATGTCACTCGGCATGCCTCATTTGACAATGTAGCAAGGTGGTTGAAGGAACTGAGGGACCATACGGACCCCAACATTGTAGTGATGCTCATTGGCAACAAATCAGATCTTCGCCATCTGGTGGCTGTCTCAACAGAGGATGGTAAATCTTTTGCCGAAAGAGAGTCCCTCTACTTCATGGAAACTTCTGCGTTGGAAGCAACCAACGTAGACGGTGCATTTACCGAAGTCTTGACTCAAATATACCGGGTGGTAAGCAAGAGGGCAGTCGAGGCAGGCAACAATGGAAGCGCTTCTGCTGTTCCATCTAAAGGACAGACCATAAATGTCAAAGATGATGGTTCTGTTTTAAAGAGACTTGGATGCTGCTCAAACTAG

Protein Analysis

219

Amino Acids

23.98

Weight (kDa)

6.33

Isoelectric Point (pI)

20.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013812)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06400
fragaria_vesca FvH4_6g27750
malus_domestica MD09G1235000.v1.1 MD17G1264100.v1.1
prunus_persica Prupe.3G113200_v2.0.a1
pyrus_communis pycom09g15320 pycom17g26390
rosa_chinensis RchiOBHm_Chr2g0130911
rosa_laevigata RLG00000019158
rosa_multiflora Rmu_sc0003629.1_g000032
rosa_roxburghii Rroxscaffold_2G00113450
rosa_rugosa Rorug02G0294000
rosa_samantha Rh2AG345300 Rh2BG353700 Rh2CG332300 Rh2DG371800
rosa_wichuraiana Rw2G028070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 93
Acc65I GGTACC 1 cut(s) 222
AccB1I GGYRCC 1 cut(s) 222
AccB7I CCANNNNNTGG 1 cut(s) 400
AccI GTMKAC 1 cut(s) 489
AciI CCGC 1 cut(s) 5
AcoI YGGCCR 1 cut(s) 211
AcsI RAATTY 1 cut(s) 146
AfaI GTAC 1 cut(s) 224
AfeI AGCGCT 1 cut(s) 571
AfiI CCNNNNNNNGG 2 cut(s) 400, 590
AgsI TTSAA 3 cut(s) 43, 146, 325
AjnI CCWGG 2 cut(s) 92, 101
AloI GAACNNNNNNTCC 2 cut(s) 74, 106
AluBI AGCT 3 cut(s) 46, 181, 191
AluI AGCT 3 cut(s) 46, 181, 191
Alw26I GTCTC 2 cut(s) 412, 628
Aor51HI AGCGCT 1 cut(s) 571
AoxI GGCC 2 cut(s) 211, 255
ApeKI GCWGC 1 cut(s) 645
ApoI RAATTY 1 cut(s) 146
Asp700I GAANNNNTTC 1 cut(s) 571
Asp718I GGTACC 1 cut(s) 222
AspLEI GCGC 2 cut(s) 242, 572
AspS9I GGNCC 3 cut(s) 255, 337, 346
AsuC2I CCSGG 1 cut(s) 527
AsuHPI GGTGA 2 cut(s) 29, 91
AvaII GGWCC 2 cut(s) 337, 346
BaeI ACNNNNGTAYC 1 cut(s) 34
BalI TGGCCA 1 cut(s) 213
BanI GGYRCC 1 cut(s) 222
BbvI GCAGC 1 cut(s) 632
BccI CCATC 4 cut(s) 402, 413, 592, 611
BceAI ACGGC 1 cut(s) 242
BciT130I CCWGG 2 cut(s) 94, 103
BcnI CCSGG 1 cut(s) 527
BcoDI GTCTC 2 cut(s) 412, 628
BfaI CTAG 2 cut(s) 272, 655
BfoI RGCGCY 1 cut(s) 573
BfuAI ACCTGC 1 cut(s) 93
BglII AGATCT 1 cut(s) 385
BisI GCNGC 1 cut(s) 646
BlsI GCNGC 1 cut(s) 647
Bme1390I CCNGG 3 cut(s) 94, 103, 527
Bme18I GGWCC 2 cut(s) 337, 346
BmgT120I GGNCC 3 cut(s) 255, 337, 346
BmiI GGNNCC 4 cut(s) 224, 256, 338, 348
BmrFI CCNGG 3 cut(s) 94, 103, 527
BmsI GCATC 3 cut(s) 163, 354, 632
BplI GAGNNNNNCTC 2 cut(s) 432, 464
BpuMI CCSGG 1 cut(s) 527
BsaJI CCNNGG 1 cut(s) 250
BsaXI ACNNNNNCTCC 2 cut(s) 113, 143
Bsc4I CCNNNNNNNGG 2 cut(s) 400, 590
BseBI CCWGG 2 cut(s) 94, 103
BseDI CCNNGG 1 cut(s) 250
BseGI GGATG 2 cut(s) 424, 647
BseLI CCNNNNNNNGG 2 cut(s) 400, 590
BseMII CTCAG 2 cut(s) 206, 323
BseXI GCAGC 1 cut(s) 632
BshFI GGCC 2 cut(s) 213, 257
BshNI GGYRCC 1 cut(s) 222
BsiSI CCGG 1 cut(s) 526
BslFI GGGAC 3 cut(s) 215, 350, 430
BslI CCNNNNNNNGG 2 cut(s) 400, 590
BsmAI GTCTC 2 cut(s) 412, 628
BsmFI GGGAC 3 cut(s) 215, 350, 430
BsnI GGCC 2 cut(s) 213, 257
Bsp143I GATC 1 cut(s) 385
BspACI CCGC 1 cut(s) 5
BspANI GGCC 2 cut(s) 213, 257
BspCNI CTCAG 2 cut(s) 205, 324
BspLI GGNNCC 4 cut(s) 224, 256, 338, 348
BspMI ACCTGC 1 cut(s) 93
BspT107I GGYRCC 1 cut(s) 222
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 1 cut(s) 385
Bst2UI CCWGG 2 cut(s) 94, 103
Bst4CI ACNGT 3 cut(s) 169, 227, 494
BstC8I GCNNGC 3 cut(s) 211, 294, 556
BstDEI CTNAG 2 cut(s) 192, 332
BstF5I GGATG 2 cut(s) 424, 647
BstH2I RGCGCY 1 cut(s) 573
BstHHI GCGC 2 cut(s) 242, 572
BstKTI GATC 1 cut(s) 388
BstMAI GTCTC 2 cut(s) 412, 628
BstMBI GATC 1 cut(s) 385
BstMWI GCNNNNNNNGC 3 cut(s) 263, 476, 551
BstNI CCWGG 2 cut(s) 94, 103
BstNSI RCATGY 1 cut(s) 296
BstSCI CCNGG 3 cut(s) 92, 101, 525
BstV1I GCAGC 1 cut(s) 632
BstX2I RGATCY 1 cut(s) 385
BstYI RGATCY 1 cut(s) 385
BsuRI GGCC 2 cut(s) 213, 257
BtsCI GGATG 2 cut(s) 424, 647
BtsI GCAGTG 1 cut(s) 204
BtsIMutI CAGTG 1 cut(s) 204
BveI ACCTGC 1 cut(s) 93
Cac8I GCNNGC 3 cut(s) 211, 294, 556
CfoI GCGC 2 cut(s) 242, 572
Cfr13I GGNCC 3 cut(s) 255, 337, 346
Csp6I GTAC 1 cut(s) 223
CviAII CATG 2 cut(s) 293, 457
CviJI RGCY 6 cut(s) 46, 181, 191, 213, 257, 404
CviKI_1 RGCY 6 cut(s) 46, 181, 191, 213, 257, 404
CviQI GTAC 1 cut(s) 223
DdeI CTNAG 2 cut(s) 192, 332
DpnI GATC 1 cut(s) 387
DpnII GATC 1 cut(s) 385
DraI TTTAAA 1 cut(s) 630
EaeI YGGCCR 1 cut(s) 211
Eco47I GGWCC 2 cut(s) 337, 346
Eco47III AGCGCT 1 cut(s) 571
EcoRII CCWGG 2 cut(s) 92, 101
FaeI CATG 2 cut(s) 296, 460
FaiI YATR 8 cut(s) 30, 244, 279, 294, 342, 458, 523, 602
FaqI GGGAC 3 cut(s) 215, 350, 430
FatI CATG 2 cut(s) 292, 456
FblI GTMKAC 1 cut(s) 489
Fnu4HI GCNGC 1 cut(s) 646
FokI GGATG 1 cut(s) 431
Fsp4HI GCNGC 1 cut(s) 646
FspBI CTAG 2 cut(s) 272, 655
GlaI GCGC 2 cut(s) 241, 571
GluI GCNGC 1 cut(s) 646
HaeII RGCGCY 1 cut(s) 573
HaeIII GGCC 2 cut(s) 213, 257
HapII CCGG 1 cut(s) 526
HhaI GCGC 2 cut(s) 242, 572
Hin1II CATG 2 cut(s) 296, 460
Hin6I GCGC 2 cut(s) 240, 570
HinP1I GCGC 2 cut(s) 240, 570
HincII GTYRAC 1 cut(s) 132
HindII GTYRAC 1 cut(s) 132
HinfI GANTC 4 cut(s) 62, 122, 443, 514
HpaII CCGG 1 cut(s) 526
HphI GGTGA 2 cut(s) 29, 91
Hpy166II GTNNAC 3 cut(s) 99, 132, 490
Hpy188I TCNGA 2 cut(s) 195, 385
Hpy188III TCNNGA 1 cut(s) 511
Hpy8I GTNNAC 3 cut(s) 99, 132, 490
Hpy99I CGWCG 1 cut(s) 26
HpyAV CCTTC 1 cut(s) 319
HpyCH4III ACNGT 3 cut(s) 169, 227, 494
HpyCH4IV ACGT 1 cut(s) 486
HpyCH4V TGCA 1 cut(s) 497
HpyF10VI GCNNNNNNNGC 3 cut(s) 263, 476, 551
HpyF3I CTNAG 2 cut(s) 192, 332
HpySE526I ACGT 1 cut(s) 486
Hsp92II CATG 2 cut(s) 296, 460
HspAI GCGC 2 cut(s) 240, 570
KpnI GGTACC 1 cut(s) 226
Kzo9I GATC 1 cut(s) 385
Lsp1109I GCAGC 1 cut(s) 632
LweI GCATC 3 cut(s) 163, 354, 632
MaeI CTAG 2 cut(s) 272, 655
MaeII ACGT 1 cut(s) 486
MaeIII GTNAC 2 cut(s) 17, 283
MalI GATC 1 cut(s) 387
MboI GATC 1 cut(s) 385
MboII GAAGA 1 cut(s) 380
MflI RGATCY 1 cut(s) 385
MlsI TGGCCA 1 cut(s) 213
MluCI AATT 2 cut(s) 115, 146
MluNI TGGCCA 1 cut(s) 213
MlyI GAGTC 3 cut(s) 131, 452, 508
MmeI TCCRAC 1 cut(s) 453
MnlI CCTC 7 cut(s) 245, 307, 327, 409, 458, 534, 544
Mox20I TGGCCA 1 cut(s) 213
MroXI GAANNNNTTC 1 cut(s) 571
MscI TGGCCA 1 cut(s) 213
MseI TTAA 2 cut(s) 114, 629
MslI CAYNNNNRTG 1 cut(s) 359
Msp20I TGGCCA 1 cut(s) 213
MspI CCGG 1 cut(s) 526
MspR9I CCNGG 3 cut(s) 94, 103, 527
MvaI CCWGG 2 cut(s) 94, 103
MwoI GCNNNNNNNGC 3 cut(s) 263, 476, 551
NciI CCSGG 1 cut(s) 527
NdeII GATC 1 cut(s) 385
NlaIII CATG 2 cut(s) 296, 460
NlaIV GGNNCC 4 cut(s) 224, 256, 338, 348
NmeAIII GCCGAG 1 cut(s) 268
NmuCI GTSAC 2 cut(s) 17, 283
NspI RCATGY 1 cut(s) 296
PaeI GCATGC 1 cut(s) 296
PdmI GAANNNNTTC 1 cut(s) 571
PfeI GAWTC 1 cut(s) 62
PflMI CCANNNNNTGG 1 cut(s) 400
PkrI GCNGC 1 cut(s) 647
PleI GAGTC 3 cut(s) 130, 451, 508
PpsI GAGTC 3 cut(s) 130, 451, 508
Psp6I CCWGG 2 cut(s) 92, 101
PspGI CCWGG 2 cut(s) 92, 101
PspN4I GGNNCC 4 cut(s) 224, 256, 338, 348
PspPI GGNCC 3 cut(s) 255, 337, 346
PsuI RGATCY 1 cut(s) 385
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
RseI CAYNNNNRTG 1 cut(s) 359
SaqAI TTAA 2 cut(s) 114, 629
SatI GCNGC 1 cut(s) 646
Sau3AI GATC 1 cut(s) 385
Sau96I GGNCC 3 cut(s) 255, 337, 346
SchI GAGTC 3 cut(s) 131, 452, 508
ScrFI CCNGG 3 cut(s) 94, 103, 527
SetI ASST 9 cut(s) 19, 48, 87, 98, 183, 193, 224, 320, 489
SfaNI GCATC 3 cut(s) 163, 354, 632
SinI GGWCC 2 cut(s) 337, 346
SmiMI CAYNNNNRTG 1 cut(s) 359
SphI GCATGC 1 cut(s) 296
Sse9I AATT 2 cut(s) 115, 146
SsiI CCGC 1 cut(s) 5
SspMI CTAG 2 cut(s) 272, 655
StyD4I CCNGG 3 cut(s) 92, 101, 525
TaaI ACNGT 3 cut(s) 169, 227, 494
TaiI ACGT 1 cut(s) 489
TaqI TCGA 2 cut(s) 80, 549
TasI AATT 2 cut(s) 115, 146
TfiI GAWTC 1 cut(s) 62
Tru1I TTAA 2 cut(s) 114, 629
Tru9I TTAA 2 cut(s) 114, 629
TscAI CASTG 1 cut(s) 211
TseFI GTSAC 2 cut(s) 17, 283
TseI GCWGC 1 cut(s) 645
Tsp45I GTSAC 2 cut(s) 17, 283
TspDTI ATGAA 1 cut(s) 445
TspGWI ACGGA 1 cut(s) 359
TspRI CASTG 1 cut(s) 211
Van91I CCANNNNNTGG 1 cut(s) 400
VpaK11BI GGWCC 2 cut(s) 337, 346
XapI RAATTY 1 cut(s) 146
XceI RCATGY 1 cut(s) 296
XmiI GTMKAC 1 cut(s) 489
XmnI GAANNNNTTC 1 cut(s) 571
XspI CTAG 2 cut(s) 272, 655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.