Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0013812

Physical Location & Seq

Genomic Coordinates Forward (+)

24699689 .. 24703315

Gene Structure 3627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g26390.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGGGAATTCGACTAAGTCACACAATGAGCAACTTAATTTAGATCGAATTCTCAATGACCACCACATCCCCGTTCACACCTACGATGATGCCTATCTTCCACAATTGTTAGACCAAACCAAGAAAAGGCAGTCTCCTTGCGCTTCATCTCTCTCTCAGCAAGAAGAAATGGCGGGGTACAAAGGTGACGATGAGTACGATTACTTGTTCAAGCTGGTATTGATTGGGGATTCTGGGGTGGGAAAGTCGAACCTGCTTTCCAGGTTCACCAGGAACGAGTTTAATTTGGAGTCCAAGTCTACCATCGGCGTCGAGTTCGCCACCAAGACTTTGACCGTTGATTCCAAGCTCGTCAAGGCTCAGATTTGGGACACTGCTGGTCAAGAAAGGTACCGTGCCATTACAAGCGCATACTACCGAGGGGCTGTTGGTGCTTTGCTAGTGTATGATGTCACTCGGCATGCCACATTTGAGAATGTAGCAAGGTGGTTGAAGGAACTGAGGGACCATACTGACCCCAACATTGTAGTGATGCTCATCGGCAACAAATCAGATCTTCGCCATCTGGTGGCTGTCTCAAAAGAGGATGGTAAATCTTTTGCCGAAAAAGAGTCCCTTTACTTCATGGAAACTTCTGCGTTGGAAGCAACCAACGTAGAAAGTGCATTTACCCAAGTCTTGACTCAAATATACCGGGTGGTAAGCAAGAGGGCAGTCGAGGCAGGCAACAGTGGAAGCGCTTCTGCTGTTCCGTCTAAAGGACAGACCATAAATGTCAAAGATGATGGTTCTGTTTTCAAGAGAATTGGATGCTGCTCAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031410 GO:0031982 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0042221 GO:0042546 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071554 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0097708 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

275

Amino Acids

30.49

Weight (kDa)

6.4

Isoelectric Point (pI)

33.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06400
fragaria_vesca	FvH4_6g27750
malus_domestica	MD09G1235000.v1.1 MD17G1264100.v1.1
prunus_persica	Prupe.3G113200_v2.0.a1
pyrus_communis	pycom09g15320 pycom17g26390
rosa_chinensis	RchiOBHm_Chr2g0130911
rosa_laevigata	RLG00000019158
rosa_multiflora	Rmu_sc0003629.1_g000032
rosa_roxburghii	Rroxscaffold_2G00113450
rosa_rugosa	Rorug02G0294000
rosa_samantha	Rh2AG345300 Rh2BG353700 Rh2CG332300 Rh2DG371800
rosa_wichuraiana	Rw2G028070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	261
Acc65I	GGTACC	1 cut(s)	390
AccB1I	GGYRCC	1 cut(s)	390
AccB7I	CCANNNNNTGG	1 cut(s)	568
AccI	GTMKAC	1 cut(s)	299
AciI	CCGC	1 cut(s)	173
AcsI	RAATTY	2 cut(s)	7, 48
AcyI	GRCGYC	1 cut(s)	309
AfaI	GTAC	3 cut(s)	179, 197, 392
AfeI	AGCGCT	1 cut(s)	739
AfiI	CCNNNNNNNGG	3 cut(s)	126, 568, 758
AgsI	TTSAA	3 cut(s)	211, 493, 799
AjnI	CCWGG	2 cut(s)	260, 269
AloI	GAACNNNNNNTCC	2 cut(s)	242, 274
AluBI	AGCT	2 cut(s)	214, 349
AluI	AGCT	2 cut(s)	214, 349
Alw26I	GTCTC	2 cut(s)	138, 580
Aor51HI	AGCGCT	1 cut(s)	739
ApeKI	GCWGC	1 cut(s)	813
ApoI	RAATTY	2 cut(s)	7, 48
Asp700I	GAANNNNTTC	1 cut(s)	739
Asp718I	GGTACC	1 cut(s)	390
AspLEI	GCGC	3 cut(s)	143, 410, 740
AspS9I	GGNCC	1 cut(s)	505
AsuC2I	CCSGG	1 cut(s)	695
AsuHPI	GGTGA	2 cut(s)	197, 259
AvaII	GGWCC	1 cut(s)	505
BaeI	ACNNNNGTAYC	2 cut(s)	169, 202
BanI	GGYRCC	1 cut(s)	390
BbvI	GCAGC	1 cut(s)	800
BccI	CCATC	4 cut(s)	311, 570, 581, 779
BciT130I	CCWGG	2 cut(s)	262, 271
BcnI	CCSGG	1 cut(s)	695
BcoDI	GTCTC	2 cut(s)	138, 580
BfaI	CTAG	2 cut(s)	440, 823
BfoI	RGCGCY	1 cut(s)	741
BfuAI	ACCTGC	1 cut(s)	261
BglII	AGATCT	1 cut(s)	553
BisI	GCNGC	1 cut(s)	814
BlsI	GCNGC	1 cut(s)	815
Bme1390I	CCNGG	3 cut(s)	262, 271, 695
Bme18I	GGWCC	1 cut(s)	505
BmgT120I	GGNCC	1 cut(s)	505
BmiI	GGNNCC	2 cut(s)	392, 506
BmrFI	CCNGG	3 cut(s)	262, 271, 695
BmsI	GCATC	3 cut(s)	79, 522, 800
BpuMI	CCSGG	1 cut(s)	695
BsaBI	GATNNNNATC	2 cut(s)	93, 536
BsaHI	GRCGYC	1 cut(s)	309
BsaJI	CCNNGG	1 cut(s)	418
BsaXI	ACNNNNNCTCC	2 cut(s)	281, 311
Bsc4I	CCNNNNNNNGG	3 cut(s)	126, 568, 758
Bse8I	GATNNNNATC	2 cut(s)	93, 536
BseBI	CCWGG	2 cut(s)	262, 271
BseDI	CCNNGG	1 cut(s)	418
BseGI	GGATG	3 cut(s)	66, 592, 815
BseJI	GATNNNNATC	2 cut(s)	93, 536
BseLI	CCNNNNNNNGG	3 cut(s)	126, 568, 758
BseMII	CTCAG	3 cut(s)	170, 374, 491
BseXI	GCAGC	1 cut(s)	800
BshNI	GGYRCC	1 cut(s)	390
BsiSI	CCGG	1 cut(s)	694
BslFI	GGGAC	3 cut(s)	383, 518, 598
BslI	CCNNNNNNNGG	3 cut(s)	126, 568, 758
BsmAI	GTCTC	2 cut(s)	138, 580
BsmFI	GGGAC	3 cut(s)	383, 518, 598
Bsp143I	GATC	2 cut(s)	43, 553
BspACI	CCGC	1 cut(s)	173
BspCNI	CTCAG	3 cut(s)	169, 373, 492
BspLI	GGNNCC	2 cut(s)	392, 506
BspMI	ACCTGC	1 cut(s)	261
BspT107I	GGYRCC	1 cut(s)	390
BssECI	CCNNGG	1 cut(s)	418
BssMI	GATC	2 cut(s)	43, 553
BssNI	GRCGYC	1 cut(s)	309
Bst2UI	CCWGG	2 cut(s)	262, 271
Bst4CI	ACNGT	3 cut(s)	337, 395, 731
BstACI	GRCGYC	1 cut(s)	309
BstC8I	GCNNGC	2 cut(s)	462, 724
BstDEI	CTNAG	4 cut(s)	15, 156, 360, 500
BstF5I	GGATG	3 cut(s)	66, 592, 815
BstH2I	RGCGCY	1 cut(s)	741
BstHHI	GCGC	3 cut(s)	143, 410, 740
BstKTI	GATC	2 cut(s)	46, 556
BstMAI	GTCTC	2 cut(s)	138, 580
BstMBI	GATC	2 cut(s)	43, 553
BstMWI	GCNNNNNNNGC	3 cut(s)	431, 644, 719
BstNI	CCWGG	2 cut(s)	262, 271
BstNSI	RCATGY	1 cut(s)	464
BstSCI	CCNGG	3 cut(s)	260, 269, 693
BstV1I	GCAGC	1 cut(s)	800
BstX2I	RGATCY	1 cut(s)	553
BstYI	RGATCY	1 cut(s)	553
BtsCI	GGATG	3 cut(s)	66, 592, 815
BtsI	GCAGTG	1 cut(s)	372
BtsIMutI	CAGTG	2 cut(s)	372, 736
BveI	ACCTGC	1 cut(s)	261
Cac8I	GCNNGC	2 cut(s)	462, 724
CfoI	GCGC	3 cut(s)	143, 410, 740
Cfr13I	GGNCC	1 cut(s)	505
CseI	GACGC	1 cut(s)	298
Csp6I	GTAC	3 cut(s)	178, 196, 391
CviAII	CATG	2 cut(s)	461, 625
CviJI	RGCY	5 cut(s)	214, 349, 359, 425, 572
CviKI_1	RGCY	5 cut(s)	214, 349, 359, 425, 572
CviQI	GTAC	3 cut(s)	178, 196, 391
DdeI	CTNAG	4 cut(s)	15, 156, 360, 500
DpnI	GATC	2 cut(s)	45, 555
DpnII	GATC	2 cut(s)	43, 553
Eco47I	GGWCC	1 cut(s)	505
Eco47III	AGCGCT	1 cut(s)	739
EcoRI	GAATTC	2 cut(s)	7, 48
EcoRII	CCWGG	2 cut(s)	260, 269
FaeI	CATG	2 cut(s)	464, 628
FaiI	YATR	7 cut(s)	412, 447, 462, 510, 626, 691, 770
FalI	AAGNNNNNCTT	2 cut(s)	600, 632
FaqI	GGGAC	3 cut(s)	383, 518, 598
FatI	CATG	2 cut(s)	460, 624
FauI	CCCGC	1 cut(s)	166
FblI	GTMKAC	1 cut(s)	299
Fnu4HI	GCNGC	1 cut(s)	814
FokI	GGATG	2 cut(s)	53, 599
Fsp4HI	GCNGC	1 cut(s)	814
FspBI	CTAG	2 cut(s)	440, 823
GlaI	GCGC	3 cut(s)	142, 409, 739
GluI	GCNGC	1 cut(s)	814
HaeII	RGCGCY	1 cut(s)	741
HapII	CCGG	1 cut(s)	694
HgaI	GACGC	1 cut(s)	298
HhaI	GCGC	3 cut(s)	143, 410, 740
Hin1I	GRCGYC	1 cut(s)	309
Hin1II	CATG	2 cut(s)	464, 628
Hin6I	GCGC	3 cut(s)	141, 408, 738
HinP1I	GCGC	3 cut(s)	141, 408, 738
HinfI	GANTC	5 cut(s)	230, 290, 341, 611, 682
HpaII	CCGG	1 cut(s)	694
HphI	GGTGA	2 cut(s)	197, 259
Hpy166II	GTNNAC	3 cut(s)	76, 267, 300
Hpy188I	TCNGA	2 cut(s)	363, 553
Hpy188III	TCNNGA	3 cut(s)	383, 679, 799
Hpy8I	GTNNAC	3 cut(s)	76, 267, 300
Hpy99I	CGWCG	1 cut(s)	314
HpyAV	CCTTC	1 cut(s)	487
HpyCH4III	ACNGT	3 cut(s)	337, 395, 731
HpyCH4IV	ACGT	1 cut(s)	654
HpyCH4V	TGCA	1 cut(s)	665
HpyF10VI	GCNNNNNNNGC	3 cut(s)	431, 644, 719
HpyF3I	CTNAG	4 cut(s)	15, 156, 360, 500
HpySE526I	ACGT	1 cut(s)	654
Hsp92I	GRCGYC	1 cut(s)	309
Hsp92II	CATG	2 cut(s)	464, 628
HspAI	GCGC	3 cut(s)	141, 408, 738
KpnI	GGTACC	1 cut(s)	394
Kzo9I	GATC	2 cut(s)	43, 553
Lsp1109I	GCAGC	1 cut(s)	800
LweI	GCATC	3 cut(s)	79, 522, 800
MaeI	CTAG	2 cut(s)	440, 823
MaeII	ACGT	1 cut(s)	654
MaeIII	GTNAC	3 cut(s)	18, 185, 451
MalI	GATC	2 cut(s)	45, 555
MboI	GATC	2 cut(s)	43, 553
MboII	GAAGA	3 cut(s)	89, 176, 548
MfeI	CAATTG	1 cut(s)	104
MflI	RGATCY	1 cut(s)	553
MluCI	AATT	6 cut(s)	7, 37, 48, 104, 283, 804
MlyI	GAGTC	3 cut(s)	299, 620, 676
MmeI	TCCRAC	1 cut(s)	621
MnlI	CCTC	5 cut(s)	413, 495, 577, 702, 712
MroXI	GAANNNNTTC	1 cut(s)	739
MseI	TTAA	2 cut(s)	36, 282
MslI	CAYNNNNRTG	1 cut(s)	527
MspI	CCGG	1 cut(s)	694
MspR9I	CCNGG	3 cut(s)	262, 271, 695
MunI	CAATTG	1 cut(s)	104
MvaI	CCWGG	2 cut(s)	262, 271
MwoI	GCNNNNNNNGC	3 cut(s)	431, 644, 719
NciI	CCSGG	1 cut(s)	695
NdeII	GATC	2 cut(s)	43, 553
NlaIII	CATG	2 cut(s)	464, 628
NlaIV	GGNNCC	2 cut(s)	392, 506
NmeAIII	GCCGAG	1 cut(s)	436
NmuCI	GTSAC	3 cut(s)	18, 185, 451
NspI	RCATGY	1 cut(s)	464
PaeI	GCATGC	1 cut(s)	464
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PdmI	GAANNNNTTC	1 cut(s)	739
PfeI	GAWTC	2 cut(s)	230, 341
PflFI	GACNNNGTC	1 cut(s)	16
PflMI	CCANNNNNTGG	1 cut(s)	568
PkrI	GCNGC	1 cut(s)	815
PleI	GAGTC	3 cut(s)	298, 619, 676
PpsI	GAGTC	3 cut(s)	298, 619, 676
Psp6I	CCWGG	2 cut(s)	260, 269
PspGI	CCWGG	2 cut(s)	260, 269
PspN4I	GGNNCC	2 cut(s)	392, 506
PspPI	GGNCC	1 cut(s)	505
PsuI	RGATCY	1 cut(s)	553
PsyI	GACNNNGTC	1 cut(s)	16
RsaI	GTAC	3 cut(s)	179, 197, 392
RsaNI	GTAC	3 cut(s)	178, 196, 391
RseI	CAYNNNNRTG	1 cut(s)	527
SaqAI	TTAA	2 cut(s)	36, 282
SatI	GCNGC	1 cut(s)	814
Sau3AI	GATC	2 cut(s)	43, 553
Sau96I	GGNCC	1 cut(s)	505
SchI	GAGTC	3 cut(s)	299, 620, 676
ScrFI	CCNGG	3 cut(s)	262, 271, 695
SetI	ASST	9 cut(s)	83, 187, 216, 255, 266, 351, 392, 488, 657
SfaNI	GCATC	3 cut(s)	79, 522, 800
SinI	GGWCC	1 cut(s)	505
SmiMI	CAYNNNNRTG	1 cut(s)	527
SphI	GCATGC	1 cut(s)	464
Sse9I	AATT	6 cut(s)	7, 37, 48, 104, 283, 804
SsiI	CCGC	1 cut(s)	173
SspMI	CTAG	2 cut(s)	440, 823
StyD4I	CCNGG	3 cut(s)	260, 269, 693
TaaI	ACNGT	3 cut(s)	337, 395, 731
TaiI	ACGT	1 cut(s)	657
TaqI	TCGA	5 cut(s)	11, 46, 248, 312, 717
TasI	AATT	6 cut(s)	7, 37, 48, 104, 283, 804
TfiI	GAWTC	2 cut(s)	230, 341
Tru1I	TTAA	2 cut(s)	36, 282
Tru9I	TTAA	2 cut(s)	36, 282
TscAI	CASTG	2 cut(s)	379, 736
TseFI	GTSAC	3 cut(s)	18, 185, 451
TseI	GCWGC	1 cut(s)	813
Tsp45I	GTSAC	3 cut(s)	18, 185, 451
TspDTI	ATGAA	2 cut(s)	135, 613
TspGWI	ACGGA	1 cut(s)	741
TspRI	CASTG	2 cut(s)	379, 736
Tth111I	GACNNNGTC	1 cut(s)	16
Van91I	CCANNNNNTGG	1 cut(s)	568
VpaK11BI	GGWCC	1 cut(s)	505
XapI	RAATTY	2 cut(s)	7, 48
XceI	RCATGY	1 cut(s)	464
XmiI	GTMKAC	1 cut(s)	299
XmnI	GAANNNNTTC	1 cut(s)	739
XspI	CTAG	2 cut(s)	440, 823

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.