Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0013812

Physical Location & Seq

Genomic Coordinates Reverse (-)

32421278 .. 32422384

Gene Structure 1107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0294000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGTTAGCCCGGACAAGTTGGAGAATAACTCAGAATGACAAGCGTCTTTTGAGTGATATTATCAGGGCTAAATATTTCAAGAAGGGCTCTTTGCTTGATCCTGATAGCTCTAATACTTGGTTCGCGAGGTATTTTCTTTGGTTCAAAGCTTCTCAAACAAGGGACTCTATTGACCTCTCTTTGAAAGTTCAAGATTTTTGGACTGAAAATGGCTGGGATCTTCCTAAATTTAGCCCTCTGGATATTGTGGAGAAAATCATTCATATTCCTGCTAAGCTTACTGGATTAATGGTCGTTTCTCTAGATTTAGAAGAAATCTCACTACAGGCACAGCTTGTCATGTTTGTCGCTGTAAAGAAGAATTTCTCCTTCACCTCTTCCGTGACTTTGCTGGAGATAAACATTATTGGCATTCAGCGCACTTTACTTTTTCAACTTGATTGGAAAATCTGGTTGGCAGCTAATCCTCATTGCAAGACCATGCGGAAAATGTTTACTCCAGACCTCCAAGTTCCAACTACTATGAACAGCATCGGTTGGTCTAAGCCTGATTTGGGTTGGATCAAGATTAATGTGAATGGGACTAGGAACCCTTCTATTGGTAGAATTGGGACTGGTGGTATCATTAGGGACTTCAATGGAAACTGGTTGAAGGGCTTCACCTGTAAACTTGGTGTTGGCCAAGTGCTGAGAGGTTTATATCTGGGTCTGAAACTTGCCAATGAAGTTCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031410 GO:0031982 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0042221 GO:0042546 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071554 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0097708 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

244

Amino Acids

27.81

Weight (kDa)

9.78

Isoelectric Point (pI)

20.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06400
fragaria_vesca	FvH4_6g27750
malus_domestica	MD09G1235000.v1.1 MD17G1264100.v1.1
prunus_persica	Prupe.3G113200_v2.0.a1
pyrus_communis	pycom09g15320 pycom17g26390
rosa_chinensis	RchiOBHm_Chr2g0130911
rosa_laevigata	RLG00000019158
rosa_multiflora	Rmu_sc0003629.1_g000032
rosa_roxburghii	Rroxscaffold_2G00113450
rosa_rugosa	Rorug02G0294000
rosa_samantha	Rh2AG345300 Rh2BG353700 Rh2CG332300 Rh2DG371800
rosa_wichuraiana	Rw2G028070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	125
AciI	CCGC	1 cut(s)	484
AclWI	GGATC	3 cut(s)	92, 225, 569
AcoI	YGGCCR	1 cut(s)	679
AcsI	RAATTY	2 cut(s)	227, 361
AfiI	CCNNNNNNNGG	2 cut(s)	554, 599
AgsI	TTSAA	7 cut(s)	79, 145, 184, 191, 434, 637, 652
AjuI	GAANNNNNNNTTGG	2 cut(s)	437, 469
AluBI	AGCT	5 cut(s)	108, 149, 277, 334, 461
AluI	AGCT	5 cut(s)	108, 149, 277, 334, 461
AlwI	GGATC	3 cut(s)	92, 225, 569
AoxI	GGCC	1 cut(s)	679
ApeKI	GCWGC	1 cut(s)	458
ApoI	RAATTY	2 cut(s)	227, 361
AseI	ATTAAT	2 cut(s)	287, 570
Asp700I	GAANNNNTTC	2 cut(s)	362, 656
AspLEI	GCGC	1 cut(s)	420
AsuC2I	CCSGG	1 cut(s)	10
AsuHPI	GGTGA	2 cut(s)	364, 652
BalI	TGGCCA	1 cut(s)	681
BanII	GRGCYC	1 cut(s)	89
BbvI	GCAGC	1 cut(s)	470
BcnI	CCSGG	1 cut(s)	10
BfaI	CTAG	3 cut(s)	302, 585, 733
BfmI	CTRYAG	1 cut(s)	323
BisI	GCNGC	1 cut(s)	459
BlpI	GCTNAGC	1 cut(s)	273
BlsI	GCNGC	1 cut(s)	460
Bme1390I	CCNGG	1 cut(s)	10
BmiI	GGNNCC	1 cut(s)	590
BmrFI	CCNGG	1 cut(s)	10
BmsI	GCATC	1 cut(s)	540
BoxI	GACNNNNGTC	1 cut(s)	42
BplI	GAGNNNNNCTC	2 cut(s)	13, 45
BpmI	CTGGAG	2 cut(s)	413, 483
Bpu1102I	GCTNAGC	1 cut(s)	273
BpuMI	CCSGG	1 cut(s)	10
Bsc4I	CCNNNNNNNGG	2 cut(s)	554, 599
Bse1I	ACTGG	3 cut(s)	286, 619, 650
Bse3DI	GCAATG	1 cut(s)	469
BseLI	CCNNNNNNNGG	2 cut(s)	554, 599
BseMI	GCAATG	1 cut(s)	469
BseMII	CTCAG	2 cut(s)	44, 680
BseNI	ACTGG	3 cut(s)	286, 619, 650
BseXI	GCAGC	1 cut(s)	470
BseYI	CCCAGC	1 cut(s)	213
Bsh1236I	CGCG	1 cut(s)	125
BshFI	GGCC	1 cut(s)	681
BsiSI	CCGG	1 cut(s)	10
BslFI	GGGAC	4 cut(s)	176, 595, 625, 644
BslI	CCNNNNNNNGG	2 cut(s)	554, 599
BsmFI	GGGAC	4 cut(s)	176, 595, 625, 644
BsmI	GAATGC	1 cut(s)	411
BsnI	GGCC	1 cut(s)	681
Bsp1286I	GDGCHC	1 cut(s)	89
Bsp143I	GATC	3 cut(s)	97, 217, 561
Bsp1720I	GCTNAGC	1 cut(s)	273
Bsp68I	TCGCGA	1 cut(s)	125
BspACI	CCGC	1 cut(s)	484
BspANI	GGCC	1 cut(s)	681
BspCNI	CTCAG	2 cut(s)	43, 681
BspFNI	CGCG	1 cut(s)	125
BspLI	GGNNCC	1 cut(s)	590
BspPI	GGATC	3 cut(s)	92, 225, 569
BsrDI	GCAATG	1 cut(s)	469
BsrI	ACTGG	3 cut(s)	286, 619, 650
BssMI	GATC	3 cut(s)	97, 217, 561
Bst6I	CTCTTC	1 cut(s)	382
BstDEI	CTNAG	4 cut(s)	30, 273, 543, 689
BstFNI	CGCG	1 cut(s)	125
BstHHI	GCGC	1 cut(s)	420
BstKTI	GATC	3 cut(s)	100, 220, 564
BstMBI	GATC	3 cut(s)	97, 217, 561
BstMWI	GCNNNNNNNGC	1 cut(s)	417
BstPAI	GACNNNNGTC	1 cut(s)	42
BstSCI	CCNGG	1 cut(s)	8
BstSFI	CTRYAG	1 cut(s)	323
BstUI	CGCG	1 cut(s)	125
BstV1I	GCAGC	1 cut(s)	470
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BsuRI	GGCC	1 cut(s)	681
BtuMI	TCGCGA	1 cut(s)	125
CfoI	GCGC	1 cut(s)	420
CseI	GACGC	1 cut(s)	32
CviAII	CATG	2 cut(s)	340, 481
DdeI	CTNAG	4 cut(s)	30, 273, 543, 689
DpnI	GATC	3 cut(s)	99, 219, 563
DpnII	GATC	3 cut(s)	97, 217, 561
EaeI	YGGCCR	1 cut(s)	679
Eam1104I	CTCTTC	1 cut(s)	382
EarI	CTCTTC	1 cut(s)	382
Eco24I	GRGCYC	1 cut(s)	89
EcoT38I	GRGCYC	1 cut(s)	89
FaeI	CATG	2 cut(s)	343, 484
FaiI	YATR	5 cut(s)	264, 341, 482, 524, 700
FaqI	GGGAC	4 cut(s)	176, 595, 625, 644
FatI	CATG	2 cut(s)	339, 480
Fnu4HI	GCNGC	1 cut(s)	459
FriOI	GRGCYC	1 cut(s)	89
Fsp4HI	GCNGC	1 cut(s)	459
FspBI	CTAG	3 cut(s)	302, 585, 733
GlaI	GCGC	1 cut(s)	419
GluI	GCNGC	1 cut(s)	459
GsaI	CCCAGC	1 cut(s)	217
GsuI	CTGGAG	2 cut(s)	413, 483
HaeIII	GGCC	1 cut(s)	681
HapII	CCGG	1 cut(s)	10
HgaI	GACGC	1 cut(s)	32
HhaI	GCGC	1 cut(s)	420
Hin1II	CATG	2 cut(s)	343, 484
Hin6I	GCGC	1 cut(s)	418
HinP1I	GCGC	1 cut(s)	418
HindIII	AAGCTT	2 cut(s)	147, 275
HinfI	GANTC	1 cut(s)	164
HpaII	CCGG	1 cut(s)	10
HphI	GGTGA	2 cut(s)	364, 652
Hpy166II	GTNNAC	2 cut(s)	495, 668
Hpy188I	TCNGA	2 cut(s)	33, 711
Hpy188III	TCNNGA	8 cut(s)	79, 101, 124, 191, 239, 302, 500, 565
Hpy8I	GTNNAC	2 cut(s)	495, 668
HpyAV	CCTTC	4 cut(s)	76, 379, 603, 646
HpyCH4V	TGCA	1 cut(s)	474
HpyF10VI	GCNNNNNNNGC	1 cut(s)	417
HpyF3I	CTNAG	4 cut(s)	30, 273, 543, 689
Hsp92II	CATG	2 cut(s)	343, 484
HspAI	GCGC	1 cut(s)	418
Kzo9I	GATC	3 cut(s)	97, 217, 561
Lsp1109I	GCAGC	1 cut(s)	470
LweI	GCATC	1 cut(s)	540
MaeI	CTAG	3 cut(s)	302, 585, 733
MaeIII	GTNAC	1 cut(s)	382
MalI	GATC	3 cut(s)	99, 219, 563
MboI	GATC	3 cut(s)	97, 217, 561
MboII	GAAGA	4 cut(s)	212, 323, 369, 370
MflI	RGATCY	1 cut(s)	217
MhlI	GDGCHC	1 cut(s)	89
MlsI	TGGCCA	1 cut(s)	681
MluCI	AATT	3 cut(s)	227, 361, 606
MluNI	TGGCCA	1 cut(s)	681
MlyI	GAGTC	1 cut(s)	158
MmeI	TCCRAC	2 cut(s)	539, 539
MnlI	CCTC	7 cut(s)	120, 185, 246, 385, 477, 515, 686
Mox20I	TGGCCA	1 cut(s)	681
MroXI	GAANNNNTTC	2 cut(s)	362, 656
MscI	TGGCCA	1 cut(s)	681
MseI	TTAA	2 cut(s)	287, 570
Msp20I	TGGCCA	1 cut(s)	681
MspI	CCGG	1 cut(s)	10
MspR9I	CCNGG	1 cut(s)	10
Mva1269I	GAATGC	1 cut(s)	411
MvnI	CGCG	1 cut(s)	125
MwoI	GCNNNNNNNGC	1 cut(s)	417
NciI	CCSGG	1 cut(s)	10
NdeII	GATC	3 cut(s)	97, 217, 561
NlaIII	CATG	2 cut(s)	343, 484
NlaIV	GGNNCC	1 cut(s)	590
NmuCI	GTSAC	1 cut(s)	382
NruI	TCGCGA	1 cut(s)	125
PctI	GAATGC	1 cut(s)	411
PdmI	GAANNNNTTC	2 cut(s)	362, 656
PkrI	GCNGC	1 cut(s)	460
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
PshAI	GACNNNNGTC	1 cut(s)	42
PshBI	ATTAAT	2 cut(s)	287, 570
PspFI	CCCAGC	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	590
PsuI	RGATCY	1 cut(s)	217
RruI	TCGCGA	1 cut(s)	125
SaqAI	TTAA	2 cut(s)	287, 570
SatI	GCNGC	1 cut(s)	459
Sau3AI	GATC	3 cut(s)	97, 217, 561
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	1 cut(s)	10
SduI	GDGCHC	1 cut(s)	89
SfaNI	GCATC	1 cut(s)	540
SfcI	CTRYAG	1 cut(s)	323
Sse9I	AATT	3 cut(s)	227, 361, 606
SsiI	CCGC	1 cut(s)	484
SspI	AATATT	1 cut(s)	74
SspMI	CTAG	3 cut(s)	302, 585, 733
StyD4I	CCNGG	1 cut(s)	8
TasI	AATT	3 cut(s)	227, 361, 606
Tru1I	TTAA	2 cut(s)	287, 570
Tru9I	TTAA	2 cut(s)	287, 570
TseFI	GTSAC	1 cut(s)	382
TseI	GCWGC	1 cut(s)	458
Tsp45I	GTSAC	1 cut(s)	382
TspDTI	ATGAA	2 cut(s)	251, 539
TspGWI	ACGGA	1 cut(s)	370
VspI	ATTAAT	2 cut(s)	287, 570
XapI	RAATTY	2 cut(s)	227, 361
XbaI	TCTAGA	1 cut(s)	301
XmnI	GAANNNNTTC	2 cut(s)	362, 656
XspI	CTAG	3 cut(s)	302, 585, 733

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.