AT1G06830

Monothiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012965
Physical Location & Seq
Forward (+)
2097106 .. 2097655
550 bp
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UTR
Exon/CDS
Intron
AT1G06830.1

Sequence Viewer

Length: 300 bp
ATGGACAAAGTTATGAGAATGTCGTCCGAAAAAGGGGTGGTTATATTTACCAAGAGCTCCTGTTGTTTGTCCTATGCGGTTCAAGTTCTCTTCCAAGATCTTGGTGTTAACCCTAAGATCCACGAGATTGATAAGGACCCTGAATGCCGAGAGATAGAGAAGGCTCTTATGAGGCTAGGGTGTTCAAAGCCGGTCCCAGCCGTCTTCATTGGTGGCAAGCTCGTTGGTTCGACCAACGAAGTAATGTCCATGCACCTAAGCAGCTCGCTCGTTCCCCTAGTGAAGCCATATTTATGTTAA

Protein Analysis

99

Amino Acids

10.89

Weight (kDa)

8.3

Isoelectric Point (pI)

55.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 13 - 75 6.3e-13 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012965)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06830 AT2G30540 AT2G47880 AT3G62960
fragaria_vesca FvH4_2g24940
malus_domestica MD03G1277900.v1.1 MD11G1299800.v1.1
prunus_persica Prupe.8G254200_v2.0.a1
pyrus_communis pycom03g22130 pycom11g26350
rosa_chinensis RchiOBHm_Chr6g0292861
rosa_laevigata RLG00000011986
rosa_rugosa Rorug06G0230300
rosa_samantha Rh6AG343600 Rh6BG350800 Rh6CG357800 Rh6DG343700
rosa_wichuraiana Rw6G029970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 77
AclWI GGATC 1 cut(s) 112
AfiI CCNNNNNNNGG 1 cut(s) 33
AgsI TTSAA 2 cut(s) 83, 186
AluBI AGCT 3 cut(s) 57, 220, 264
AluI AGCT 3 cut(s) 57, 220, 264
Alw21I GWGCWC 1 cut(s) 59
AlwI GGATC 1 cut(s) 112
ApeKI GCWGC 1 cut(s) 261
AspS9I GGNCC 2 cut(s) 136, 193
AvaII GGWCC 2 cut(s) 136, 193
BanII GRGCYC 1 cut(s) 59
BauI CACGAG 1 cut(s) 122
BbsI GAAGAC 1 cut(s) 196
Bbv12I GWGCWC 1 cut(s) 59
BbvI GCAGC 1 cut(s) 273
BceAI ACGGC 1 cut(s) 185
BcgI CGANNNNNNTGC 2 cut(s) 250, 284
BfaI CTAG 2 cut(s) 176, 278
BglII AGATCT 1 cut(s) 97
BisI GCNGC 1 cut(s) 262
BlsI GCNGC 1 cut(s) 263
Bme18I GGWCC 2 cut(s) 136, 193
BmgT120I GGNCC 2 cut(s) 136, 193
BmiI GGNNCC 2 cut(s) 138, 195
BpiI GAAGAC 1 cut(s) 196
Bpu10I CCTNAGC 1 cut(s) 257
Bsc4I CCNNNNNNNGG 1 cut(s) 33
Bse118I RCCGGY 1 cut(s) 190
BseLI CCNNNNNNNGG 1 cut(s) 33
BseXI GCAGC 1 cut(s) 273
BseYI CCCAGC 1 cut(s) 196
BsiHKAI GWGCWC 1 cut(s) 59
BsiSI CCGG 1 cut(s) 191
BslFI GGGAC 1 cut(s) 179
BslI CCNNNNNNNGG 1 cut(s) 33
BsmFI GGGAC 1 cut(s) 179
BsmI GAATGC 1 cut(s) 149
Bsp1286I GDGCHC 1 cut(s) 59
Bsp143I GATC 2 cut(s) 97, 117
BspACI CCGC 1 cut(s) 77
BspLI GGNNCC 2 cut(s) 138, 195
BspPI GGATC 1 cut(s) 112
BsrFI RCCGGY 1 cut(s) 190
BssAI RCCGGY 1 cut(s) 190
BssMI GATC 2 cut(s) 97, 117
BssSI CACGAG 1 cut(s) 122
Bst2BI CACGAG 1 cut(s) 122
Bst6I CTCTTC 1 cut(s) 95
BstC8I GCNNGC 2 cut(s) 218, 266
BstDEI CTNAG 2 cut(s) 114, 257
BstKTI GATC 2 cut(s) 100, 120
BstMBI GATC 2 cut(s) 97, 117
BstV1I GCAGC 1 cut(s) 273
BstV2I GAAGAC 1 cut(s) 196
BstX2I RGATCY 2 cut(s) 97, 117
BstXI CCANNNNNNTGG 1 cut(s) 101
BstYI RGATCY 2 cut(s) 97, 117
Cac8I GCNNGC 2 cut(s) 218, 266
Cfr10I RCCGGY 1 cut(s) 190
Cfr13I GGNCC 2 cut(s) 136, 193
CviAII CATG 1 cut(s) 250
CviJI RGCY 8 cut(s) 57, 164, 175, 190, 200, 220, 264, 286
CviKI_1 RGCY 8 cut(s) 57, 164, 175, 190, 200, 220, 264, 286
DdeI CTNAG 2 cut(s) 114, 257
DpnI GATC 2 cut(s) 99, 119
DpnII GATC 2 cut(s) 97, 117
Eam1104I CTCTTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 95
Ecl136II GAGCTC 1 cut(s) 57
Eco24I GRGCYC 1 cut(s) 59
Eco47I GGWCC 2 cut(s) 136, 193
Eco53kI GAGCTC 1 cut(s) 57
EcoICRI GAGCTC 1 cut(s) 57
EcoO109I RGGNCCY 1 cut(s) 136
EcoT38I GRGCYC 1 cut(s) 59
FaeI CATG 1 cut(s) 253
FaiI YATR 7 cut(s) 14, 44, 75, 170, 251, 289, 295
FaqI GGGAC 1 cut(s) 179
FatI CATG 1 cut(s) 249
Fnu4HI GCNGC 1 cut(s) 262
FriOI GRGCYC 1 cut(s) 59
Fsp4HI GCNGC 1 cut(s) 262
FspBI CTAG 2 cut(s) 176, 278
GluI GCNGC 1 cut(s) 262
GsaI CCCAGC 1 cut(s) 200
HapII CCGG 1 cut(s) 191
Hin1II CATG 1 cut(s) 253
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HpaI GTTAAC 1 cut(s) 109
HpaII CCGG 1 cut(s) 191
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 1 cut(s) 28
Hpy8I GTNNAC 1 cut(s) 109
HpyAV CCTTC 1 cut(s) 154
HpyCH4V TGCA 1 cut(s) 253
HpyF3I CTNAG 2 cut(s) 114, 257
Hsp92II CATG 1 cut(s) 253
KspAI GTTAAC 1 cut(s) 109
Kzo9I GATC 2 cut(s) 97, 117
LmnI GCTCC 1 cut(s) 62
LpnPI CCDG 4 cut(s) 73, 153, 204, 210
Lsp1109I GCAGC 1 cut(s) 273
MaeI CTAG 2 cut(s) 176, 278
MalI GATC 2 cut(s) 99, 119
MboI GATC 2 cut(s) 97, 117
MboII GAAGA 2 cut(s) 82, 196
MflI RGATCY 2 cut(s) 97, 117
MhlI GDGCHC 1 cut(s) 59
MnlI CCTC 1 cut(s) 165
MseI TTAA 2 cut(s) 108, 298
MslI CAYNNNNRTG 1 cut(s) 292
MspI CCGG 1 cut(s) 191
Mva1269I GAATGC 1 cut(s) 149
NdeII GATC 2 cut(s) 97, 117
NlaIII CATG 1 cut(s) 253
NlaIV GGNNCC 2 cut(s) 138, 195
NmeAIII GCCGAG 1 cut(s) 173
PctI GAATGC 1 cut(s) 149
PkrI GCNGC 1 cut(s) 263
PpuMI RGGWCCY 1 cut(s) 136
Psp124BI GAGCTC 1 cut(s) 59
Psp5II RGGWCCY 1 cut(s) 136
PspFI CCCAGC 1 cut(s) 196
PspN4I GGNNCC 2 cut(s) 138, 195
PspPI GGNCC 2 cut(s) 136, 193
PspPPI RGGWCCY 1 cut(s) 136
PsuI RGATCY 2 cut(s) 97, 117
RseI CAYNNNNRTG 1 cut(s) 292
SacI GAGCTC 1 cut(s) 59
SaqAI TTAA 2 cut(s) 108, 298
SatI GCNGC 1 cut(s) 262
Sau3AI GATC 2 cut(s) 97, 117
Sau96I GGNCC 2 cut(s) 136, 193
SduI GDGCHC 1 cut(s) 59
SetI ASST 4 cut(s) 59, 222, 258, 266
SinI GGWCC 2 cut(s) 136, 193
SmiMI CAYNNNNRTG 1 cut(s) 292
SsiI CCGC 1 cut(s) 77
SspMI CTAG 2 cut(s) 176, 278
SstI GAGCTC 1 cut(s) 59
TaqI TCGA 1 cut(s) 230
Tru1I TTAA 2 cut(s) 108, 298
Tru9I TTAA 2 cut(s) 108, 298
TseI GCWGC 1 cut(s) 261
TspDTI ATGAA 1 cut(s) 196
VpaK11BI GGWCC 2 cut(s) 136, 193
XspI CTAG 2 cut(s) 176, 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.