FvH4_2g24940

Monothiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0012965
Physical Location & Seq
Reverse (-)
20263822 .. 20264864
1043 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g24940.t1

Sequence Viewer

Length: 309 bp
ATGGACAAGGTAATACGGTTGGCATCAGCGAATGATGTGGTGATTTTTAGCAAGAGCTCATGTTGCCTGTGCTATGCAGTCAACATTCTATTTCAGGAGATTGGAGTGCGCGCTTCAGTTAATGAGATCGACAATGACCCTGATGGCAGGGAAATGGAGAAGTGTCTAATGAGGATGGGGTGCTCTTCTGTTCCGGCCGTGTTCATAGGTGGACAACTGATCGGATCAACCAATGAAGTCATGTCCCTCCACCTTAAAGGGCAACTGATCCCAAAACTGAAGGCTTATGAGCAGAAGGCTACGTCCTGA

Protein Analysis

103

Amino Acids

11.13

Weight (kDa)

6.54

Isoelectric Point (pI)

37.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 13 - 74 4.5e-11 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012965)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06830 AT2G30540 AT2G47880 AT3G62960
fragaria_vesca FvH4_2g24940
malus_domestica MD03G1277900.v1.1 MD11G1299800.v1.1
prunus_persica Prupe.8G254200_v2.0.a1
pyrus_communis pycom03g22130 pycom11g26350
rosa_chinensis RchiOBHm_Chr6g0292861
rosa_laevigata RLG00000011986
rosa_rugosa Rorug06G0230300
rosa_samantha Rh6AG343600 Rh6BG350800 Rh6CG357800 Rh6DG343700
rosa_wichuraiana Rw6G029970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 111
AclWI GGATC 2 cut(s) 232, 262
AcoI YGGCCR 1 cut(s) 195
AcuI CTGAAG 2 cut(s) 99, 299
AluBI AGCT 1 cut(s) 57
AluI AGCT 1 cut(s) 57
Alw21I GWGCWC 2 cut(s) 59, 185
AlwI GGATC 2 cut(s) 232, 262
AoxI GGCC 1 cut(s) 195
AspLEI GCGC 2 cut(s) 111, 113
AsuHPI GGTGA 1 cut(s) 52
BanII GRGCYC 1 cut(s) 59
Bbv12I GWGCWC 2 cut(s) 59, 185
BccI CCATC 2 cut(s) 137, 169
BceAI ACGGC 1 cut(s) 182
BmsI GCATC 1 cut(s) 32
BseGI GGATG 1 cut(s) 180
BsePI GCGCGC 1 cut(s) 109
BseX3I CGGCCG 1 cut(s) 195
Bsh1236I CGCG 1 cut(s) 111
Bsh1285I CGRYCG 1 cut(s) 198
BshFI GGCC 1 cut(s) 197
BsiEI CGRYCG 1 cut(s) 198
BsiHKAI GWGCWC 2 cut(s) 59, 185
BsiSI CCGG 1 cut(s) 194
BslFI GGGAC 1 cut(s) 229
BsmFI GGGAC 1 cut(s) 229
BsnI GGCC 1 cut(s) 197
Bsp1286I GDGCHC 2 cut(s) 59, 185
Bsp143I GATC 4 cut(s) 126, 219, 224, 267
BspANI GGCC 1 cut(s) 197
BspFNI CGCG 1 cut(s) 111
BspPI GGATC 2 cut(s) 232, 262
BspQI GCTCTTC 1 cut(s) 190
BssHII GCGCGC 1 cut(s) 109
BssMI GATC 4 cut(s) 126, 219, 224, 267
Bst4CI ACNGT 1 cut(s) 18
Bst6I CTCTTC 1 cut(s) 190
BstC8I GCNNGC 1 cut(s) 111
BstF5I GGATG 1 cut(s) 180
BstFNI CGCG 1 cut(s) 111
BstHHI GCGC 2 cut(s) 111, 113
BstKTI GATC 4 cut(s) 129, 222, 227, 270
BstMBI GATC 4 cut(s) 126, 219, 224, 267
BstMCI CGRYCG 1 cut(s) 198
BstMWI GCNNNNNNNGC 1 cut(s) 63
BstUI CGCG 1 cut(s) 111
BstZI CGGCCG 1 cut(s) 195
BsuRI GGCC 1 cut(s) 197
BtsCI GGATG 1 cut(s) 180
Cac8I GCNNGC 1 cut(s) 111
CfoI GCGC 2 cut(s) 111, 113
CviAII CATG 2 cut(s) 60, 241
CviJI RGCY 4 cut(s) 57, 197, 284, 299
CviKI_1 RGCY 4 cut(s) 57, 197, 284, 299
DpnI GATC 4 cut(s) 128, 221, 226, 269
DpnII GATC 4 cut(s) 126, 219, 224, 267
EaeI YGGCCR 1 cut(s) 195
EagI CGGCCG 1 cut(s) 195
Eam1104I CTCTTC 1 cut(s) 190
EarI CTCTTC 1 cut(s) 190
Ecl136II GAGCTC 1 cut(s) 57
EclXI CGGCCG 1 cut(s) 195
Eco24I GRGCYC 1 cut(s) 59
Eco52I CGGCCG 1 cut(s) 195
Eco53kI GAGCTC 1 cut(s) 57
Eco57I CTGAAG 2 cut(s) 99, 299
EcoICRI GAGCTC 1 cut(s) 57
EcoT38I GRGCYC 1 cut(s) 59
FaeI CATG 2 cut(s) 63, 244
FaiI YATR 5 cut(s) 61, 75, 206, 242, 288
FaqI GGGAC 1 cut(s) 229
FatI CATG 2 cut(s) 59, 240
FokI GGATG 1 cut(s) 187
FriOI GRGCYC 1 cut(s) 59
GlaI GCGC 2 cut(s) 110, 112
HaeIII GGCC 1 cut(s) 197
HapII CCGG 1 cut(s) 194
HhaI GCGC 2 cut(s) 111, 113
Hin1II CATG 2 cut(s) 63, 244
Hin6I GCGC 2 cut(s) 109, 111
HinP1I GCGC 2 cut(s) 109, 111
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HpaII CCGG 1 cut(s) 194
HphI GGTGA 1 cut(s) 52
Hpy166II GTNNAC 2 cut(s) 82, 212
Hpy188I TCNGA 1 cut(s) 224
Hpy188III TCNNGA 2 cut(s) 95, 306
Hpy8I GTNNAC 2 cut(s) 82, 212
HpyAV CCTTC 2 cut(s) 274, 289
HpyCH4III ACNGT 1 cut(s) 18
HpyCH4IV ACGT 1 cut(s) 302
HpyCH4V TGCA 1 cut(s) 77
HpyF10VI GCNNNNNNNGC 1 cut(s) 63
HpySE526I ACGT 1 cut(s) 302
Hsp92II CATG 2 cut(s) 63, 244
HspAI GCGC 2 cut(s) 109, 111
Kzo9I GATC 4 cut(s) 126, 219, 224, 267
LguI GCTCTTC 1 cut(s) 190
LpnPI CCDG 5 cut(s) 80, 80, 133, 153, 207
LweI GCATC 1 cut(s) 32
MaeII ACGT 1 cut(s) 302
MalI GATC 4 cut(s) 128, 221, 226, 269
MboI GATC 4 cut(s) 126, 219, 224, 267
MboII GAAGA 1 cut(s) 177
MhlI GDGCHC 2 cut(s) 59, 185
MnlI CCTC 2 cut(s) 165, 257
MseI TTAA 2 cut(s) 120, 255
MspI CCGG 1 cut(s) 194
MvnI CGCG 1 cut(s) 111
MwoI GCNNNNNNNGC 1 cut(s) 63
NdeII GATC 4 cut(s) 126, 219, 224, 267
NlaIII CATG 2 cut(s) 63, 244
PauI GCGCGC 1 cut(s) 109
PciSI GCTCTTC 1 cut(s) 190
Psp124BI GAGCTC 1 cut(s) 59
PteI GCGCGC 1 cut(s) 109
SacI GAGCTC 1 cut(s) 59
SapI GCTCTTC 1 cut(s) 190
SaqAI TTAA 2 cut(s) 120, 255
Sau3AI GATC 4 cut(s) 126, 219, 224, 267
SduI GDGCHC 2 cut(s) 59, 185
SetI ASST 5 cut(s) 12, 59, 211, 255, 305
SfaNI GCATC 1 cut(s) 32
SstI GAGCTC 1 cut(s) 59
TaaI ACNGT 1 cut(s) 18
TaiI ACGT 1 cut(s) 305
TaqI TCGA 1 cut(s) 129
Tru1I TTAA 2 cut(s) 120, 255
Tru9I TTAA 2 cut(s) 120, 255
TspDTI ATGAA 2 cut(s) 193, 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.