AT3G62960

glutaredoxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012965
Physical Location & Seq
Forward (+)
23268641 .. 23269324
684 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G62960.1

Sequence Viewer

Length: 309 bp
ATGGACAAGGTTATGAGAATGTCATCGGAGAAAGGAGTCGTGATCTTCACCAAAAGTTCATGTTGTCTCTGCTACGCCGTGCAAATCCTTTTCCGTGATCTTAGGGTTCAACCAACAATCCACGAGATCGACAACGATCCTGACTGCCGTGAGATCGAGAAGGCCTTAGTTCGTCTTGGCTGCGCCAACGCGGTTCCTGCTGTCTTTGTAAGTGGCAAGCTCGTGGGTTCGACCAACGATGTCATGTCGCTTCACCTAAGTGGCTCCCTCGTTCCCTTGATCAAGCCGTATCAGTCATTTCATAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

102

Amino Acids

11.28

Weight (kDa)

7.65

Isoelectric Point (pI)

49.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 13 - 75 2.6e-12 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012965)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06830 AT2G30540 AT2G47880 AT3G62960
fragaria_vesca FvH4_2g24940
malus_domestica MD03G1277900.v1.1 MD11G1299800.v1.1
prunus_persica Prupe.8G254200_v2.0.a1
pyrus_communis pycom03g22130 pycom11g26350
rosa_chinensis RchiOBHm_Chr6g0292861
rosa_laevigata RLG00000011986
rosa_rugosa Rorug06G0230300
rosa_samantha Rh6AG343600 Rh6BG350800 Rh6CG357800 Rh6DG343700
rosa_wichuraiana Rw6G029970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 191
AciI CCGC 1 cut(s) 191
AclWI GGATC 1 cut(s) 131
AgsI TTSAA 1 cut(s) 110
AleI CACNNNNGTG 1 cut(s) 258
AluBI AGCT 1 cut(s) 220
AluI AGCT 1 cut(s) 220
Alw26I GTCTC 1 cut(s) 71
AlwI GGATC 1 cut(s) 131
AoxI GGCC 1 cut(s) 162
ApeKI GCWGC 1 cut(s) 180
AspLEI GCGC 1 cut(s) 185
AsuHPI GGTGA 2 cut(s) 40, 245
BauI CACGAG 2 cut(s) 122, 221
BbvI GCAGC 1 cut(s) 167
BceAI ACGGC 3 cut(s) 62, 132, 271
BclI TGATCA 1 cut(s) 279
BcoDI GTCTC 1 cut(s) 71
BfaI CTAG 1 cut(s) 307
BisI GCNGC 1 cut(s) 181
BlsI GCNGC 1 cut(s) 182
BmiI GGNNCC 2 cut(s) 195, 265
BseXI GCAGC 1 cut(s) 167
Bsh1236I CGCG 1 cut(s) 191
BshFI GGCC 1 cut(s) 164
BsmAI GTCTC 1 cut(s) 71
BsnI GGCC 1 cut(s) 164
Bsp143I GATC 6 cut(s) 42, 97, 126, 136, 153, 279
BspACI CCGC 1 cut(s) 191
BspANI GGCC 1 cut(s) 164
BspFNI CGCG 1 cut(s) 191
BspLI GGNNCC 2 cut(s) 195, 265
BspPI GGATC 1 cut(s) 131
BssMI GATC 6 cut(s) 42, 97, 126, 136, 153, 279
BssSI CACGAG 2 cut(s) 122, 221
Bst2BI CACGAG 2 cut(s) 122, 221
BstC8I GCNNGC 1 cut(s) 218
BstDEI CTNAG 3 cut(s) 101, 166, 257
BstFNI CGCG 1 cut(s) 191
BstHHI GCGC 1 cut(s) 185
BstKTI GATC 6 cut(s) 45, 100, 129, 139, 156, 282
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 6 cut(s) 42, 97, 126, 136, 153, 279
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstUI CGCG 1 cut(s) 191
BstV1I GCAGC 1 cut(s) 167
BsuRI GGCC 1 cut(s) 164
Cac8I GCNNGC 1 cut(s) 218
CfoI GCGC 1 cut(s) 185
CviAII CATG 2 cut(s) 60, 244
CviJI RGCY 5 cut(s) 164, 180, 220, 264, 286
CviKI_1 RGCY 5 cut(s) 164, 180, 220, 264, 286
DdeI CTNAG 3 cut(s) 101, 166, 257
DpnI GATC 6 cut(s) 44, 99, 128, 138, 155, 281
DpnII GATC 6 cut(s) 42, 97, 126, 136, 153, 279
Eco147I AGGCCT 1 cut(s) 164
FaeI CATG 2 cut(s) 63, 247
FaiI YATR 4 cut(s) 14, 61, 245, 303
FatI CATG 2 cut(s) 59, 243
FbaI TGATCA 1 cut(s) 279
Fnu4HI GCNGC 1 cut(s) 181
Fsp4HI GCNGC 1 cut(s) 181
FspBI CTAG 1 cut(s) 307
GlaI GCGC 1 cut(s) 184
GluI GCNGC 1 cut(s) 181
HaeIII GGCC 1 cut(s) 164
HhaI GCGC 1 cut(s) 185
Hin1II CATG 2 cut(s) 63, 247
Hin6I GCGC 1 cut(s) 183
HinP1I GCGC 1 cut(s) 183
HinfI GANTC 1 cut(s) 36
HphI GGTGA 2 cut(s) 40, 245
Hpy188I TCNGA 1 cut(s) 28
Hpy188III TCNNGA 3 cut(s) 40, 140, 157
HpyAV CCTTC 1 cut(s) 154
HpyCH4V TGCA 1 cut(s) 82
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpyF3I CTNAG 3 cut(s) 101, 166, 257
Hsp92II CATG 2 cut(s) 63, 247
HspAI GCGC 1 cut(s) 183
Ksp22I TGATCA 1 cut(s) 279
Kzo9I GATC 6 cut(s) 42, 97, 126, 136, 153, 279
LmnI GCTCC 1 cut(s) 269
LpnPI CCDG 2 cut(s) 153, 210
Lsp1109I GCAGC 1 cut(s) 167
MaeI CTAG 1 cut(s) 307
MalI GATC 6 cut(s) 44, 99, 128, 138, 155, 281
MboI GATC 6 cut(s) 42, 97, 126, 136, 153, 279
MboII GAAGA 1 cut(s) 37
MlyI GAGTC 1 cut(s) 45
MnlI CCTC 1 cut(s) 278
MslI CAYNNNNRTG 1 cut(s) 258
MvnI CGCG 1 cut(s) 191
MwoI GCNNNNNNNGC 1 cut(s) 197
NdeII GATC 6 cut(s) 42, 97, 126, 136, 153, 279
NlaIII CATG 2 cut(s) 63, 247
NlaIV GGNNCC 2 cut(s) 195, 265
OliI CACNNNNGTG 1 cut(s) 258
PceI AGGCCT 1 cut(s) 164
PkrI GCNGC 1 cut(s) 182
PleI GAGTC 1 cut(s) 44
PpsI GAGTC 1 cut(s) 44
PspN4I GGNNCC 2 cut(s) 195, 265
RseI CAYNNNNRTG 1 cut(s) 258
SatI GCNGC 1 cut(s) 181
Sau3AI GATC 6 cut(s) 42, 97, 126, 136, 153, 279
SchI GAGTC 1 cut(s) 45
SetI ASST 3 cut(s) 12, 222, 258
SmiMI CAYNNNNRTG 1 cut(s) 258
SseBI AGGCCT 1 cut(s) 164
SsiI CCGC 1 cut(s) 191
SspMI CTAG 1 cut(s) 307
StuI AGGCCT 1 cut(s) 164
TaqI TCGA 3 cut(s) 129, 156, 230
TseI GCWGC 1 cut(s) 180
TspDTI ATGAA 2 cut(s) 48, 290
TspGWI ACGGA 1 cut(s) 83
XspI CTAG 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.